Wall clock time and date at job start Mon Mar 30 2020 01:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00145 * 2 1 4 4 C 1.38761 * 120.05424 * 0.29856 * 3 2 1 5 5 C 1.38116 * 119.94352 * 180.20603 * 4 3 2 6 6 C 1.50702 * 119.97391 * 179.79298 * 5 4 3 7 7 C 1.38293 * 120.05609 * 359.51762 * 5 4 3 8 8 C 1.50696 * 119.94509 * 180.25295 * 7 5 4 9 9 N 1.46899 * 109.47023 * 285.43613 * 8 7 5 10 10 C 1.47483 * 111.00239 * 270.14693 * 9 8 7 11 11 C 1.53507 * 87.93595 * 221.29939 * 10 9 8 12 12 C 1.50695 * 114.34694 * 139.68403 * 11 10 9 13 13 H 1.07998 * 120.00379 * 266.08210 * 12 11 10 14 14 C 1.37880 * 119.99958 * 86.07476 * 12 11 10 15 15 N 1.31520 * 119.99877 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00084 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47114 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47210 * 120.00273 * 16 14 12 19 19 H 1.48503 * 109.46978 * 239.99757 * 16 14 12 20 20 C 1.47486 * 111.00174 * 174.18081 * 9 8 7 21 21 C 1.38243 * 120.11155 * 0.23052 * 7 5 4 22 22 C 1.38166 * 120.05535 * 0.02562 * 21 7 5 23 23 C 1.50699 * 120.03007 * 180.02562 * 22 21 7 24 24 H 1.09001 * 109.47187 * 299.99629 * 1 2 3 25 25 H 1.09000 * 109.47052 * 60.00039 * 1 2 3 26 26 H 1.09005 * 109.47079 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.02781 * 0.02562 * 4 3 2 28 28 H 1.08999 * 109.46811 * 264.08978 * 6 5 4 29 29 H 1.08998 * 109.46738 * 24.08609 * 6 5 4 30 30 H 1.09003 * 109.47029 * 144.08766 * 6 5 4 31 31 H 1.08998 * 109.47029 * 45.43691 * 8 7 5 32 32 H 1.08999 * 109.47065 * 165.43696 * 8 7 5 33 33 H 1.08998 * 113.47374 * 336.07149 * 10 9 8 34 34 H 1.09007 * 113.47035 * 106.52885 * 10 9 8 35 35 H 1.09004 * 114.16960 * 272.37984 * 11 10 9 36 36 H 0.97005 * 120.00020 * 180.02562 * 15 14 12 37 37 H 1.09008 * 113.47514 * 253.47315 * 20 9 8 38 38 H 1.09003 * 113.47323 * 23.87029 * 20 9 8 39 39 H 1.07993 * 119.97277 * 180.02562 * 21 7 5 40 40 H 1.08997 * 109.47456 * 89.99654 * 23 22 21 41 41 H 1.09001 * 109.47172 * 209.99800 * 23 22 21 42 42 H 1.09007 * 109.46687 * 329.99493 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0063 5 6 1.9208 3.6047 0.0019 6 6 1.1019 4.8698 0.0040 7 6 3.3019 3.6758 0.0015 8 6 3.9861 5.0185 0.0025 9 7 3.8794 5.6234 -1.3319 10 6 5.0216 5.2361 -2.1807 11 6 5.0622 6.6835 -2.6904 12 6 6.4508 7.2448 -2.8569 13 1 6.9036 7.8117 -2.0569 14 6 7.1433 7.0345 -4.0305 15 7 6.5917 6.3445 -5.0048 16 14 8.8648 7.7297 -4.2366 17 1 9.2537 8.4618 -3.0046 18 1 9.8215 6.6195 -4.4762 19 1 8.8874 8.6608 -5.3932 20 6 4.4159 6.9972 -1.3339 21 6 4.0560 2.5171 0.0005 22 6 3.4312 1.2848 -0.0005 23 6 4.2537 0.0221 -0.0010 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.2128 2.3203 0.0116 28 1 0.9888 5.2310 -1.0181 29 1 0.1188 4.6655 0.4280 30 1 1.6059 5.6279 0.6036 31 1 3.5088 5.6688 0.7355 32 1 5.0374 4.8904 0.2604 33 1 5.9072 4.9506 -1.6131 34 1 4.7628 4.5110 -2.9524 35 1 4.4157 6.8732 -3.5473 36 1 7.0790 6.1962 -5.8304 37 1 3.6438 7.7648 -1.3878 38 1 5.1391 7.1821 -0.5395 39 1 5.1344 2.5752 0.0006 40 1 4.4517 -0.2830 1.0265 41 1 3.7065 -0.7678 -0.5155 42 1 5.1980 0.2039 -0.5145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203752207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:02 Heat of formation + Delta-G solvation = -6.953083 kcal Electronic energy + Delta-G solvation = -21183.309211 eV Core-core repulsion = 18128.533934 eV Total energy + Delta-G solvation = -3054.775277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43923 -40.51894 -38.59247 -35.05054 -34.58352 -32.74970 -30.15760 -29.90131 -28.44037 -27.20912 -26.49266 -25.49971 -24.10354 -22.82274 -21.08311 -20.41727 -18.64162 -18.36185 -17.51874 -16.75878 -16.65725 -16.44935 -15.92018 -15.82904 -15.32086 -14.93551 -14.58229 -14.47890 -14.04836 -13.85904 -13.73546 -13.47489 -13.44168 -13.17965 -12.88501 -12.79892 -12.68546 -12.67832 -12.42571 -12.26659 -12.01967 -11.75566 -11.56816 -11.47287 -11.10399 -10.84910 -10.50055 -9.67491 -9.59621 -8.87329 -8.14625 -6.26140 0.39047 0.46165 1.41654 1.43458 1.55124 2.40541 2.42642 2.70603 3.14704 3.45259 3.80665 3.85263 3.92492 4.13622 4.24660 4.29403 4.36641 4.40726 4.47168 4.48266 4.58576 4.65658 4.73026 4.73816 4.77412 4.79865 4.82192 4.87623 4.92684 4.96154 4.99622 5.16339 5.25041 5.34746 5.41944 5.47010 5.56753 5.63632 5.80424 5.86435 5.89500 6.30723 6.41409 6.48884 6.84062 7.42614 8.95257 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.003981 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.206627 B = 7031.906096 C = 7584.140259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.329 6.329 3 C 0.115 3.885 4 C -0.209 4.209 5 C -0.041 4.041 6 C -0.103 4.103 7 C -0.118 4.118 8 C 0.065 3.935 9 N -0.468 5.468 10 C 0.022 3.978 11 C 0.022 3.978 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.958 3.042 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.010 3.990 21 C -0.086 4.086 22 C -0.141 4.141 23 C -0.097 4.097 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.121 0.879 27 H 0.149 0.851 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.036 0.964 35 H 0.028 0.972 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 -10.281 12.844 19.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.070 3.930 4 C -0.228 4.228 5 C -0.041 4.041 6 C -0.160 4.160 7 C -0.118 4.118 8 C -0.063 4.063 9 N -0.190 5.190 10 C -0.108 4.108 11 C 0.003 3.997 12 C -0.567 4.567 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.783 3.217 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.206 1.206 20 C -0.119 4.119 21 C -0.105 4.105 22 C -0.141 4.141 23 C -0.154 4.154 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.166 0.834 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.143 0.857 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.854 -10.685 12.504 20.274 hybrid contribution 1.588 0.461 -0.283 1.678 sum -10.266 -10.224 12.221 18.955 Atomic orbital electron populations 1.23318 0.76756 1.05462 1.02027 1.86016 1.23137 1.26365 1.88768 1.18904 0.91853 0.84749 0.97536 1.21277 1.00740 0.91181 1.09592 1.19744 0.93065 0.95601 0.95734 1.20737 0.98847 0.93785 1.02606 1.19613 0.93740 0.94407 1.04085 1.21517 0.98346 0.93485 0.92922 1.68843 1.37025 1.03995 1.09186 1.23757 0.90905 1.00246 0.95874 1.20030 0.94998 0.92271 0.92447 1.21420 1.00491 1.34063 1.00745 0.92133 1.25844 1.02026 0.95188 0.95474 1.70116 1.39111 1.40950 1.05996 0.85512 0.79674 0.78172 0.78344 1.18664 1.20723 1.20586 1.23833 0.97445 0.91878 0.98717 1.20906 0.99791 0.91105 0.98665 1.19428 0.91370 0.96412 1.06925 1.20562 0.98576 0.93599 1.02663 0.91682 0.92375 0.86128 0.83375 0.91472 0.90201 0.91287 0.89076 0.94010 0.93317 0.94557 0.95354 0.92921 0.90485 0.91948 0.85737 0.90543 0.91388 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.86 9.54 -92.38 -0.88 -8.74 16 3 C 0.11 3.18 6.66 22.51 0.15 3.33 16 4 C -0.21 -5.46 8.67 22.37 0.19 -5.26 16 5 C -0.04 -1.18 5.88 -19.88 -0.12 -1.30 16 6 C -0.10 -2.55 9.38 71.24 0.67 -1.88 16 7 C -0.12 -3.78 5.43 -19.85 -0.11 -3.89 16 8 C 0.07 2.17 4.21 85.56 0.36 2.53 16 9 N -0.47 -18.65 6.18 -932.52 -5.76 -24.41 16 10 C 0.02 1.02 7.25 83.57 0.61 1.63 16 11 C 0.02 1.11 3.76 -11.20 -0.04 1.07 16 12 C -0.53 -29.04 8.83 25.60 0.23 -28.81 16 13 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 14 C 0.01 0.77 5.46 84.65 0.46 1.24 16 15 N -0.92 -54.78 13.26 21.45 0.28 -54.49 16 16 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 C 0.01 0.40 7.27 83.57 0.61 1.01 16 21 C -0.09 -2.70 9.32 22.25 0.21 -2.49 16 22 C -0.14 -4.09 5.89 -19.77 -0.12 -4.21 16 23 C -0.10 -2.33 9.79 71.24 0.70 -1.64 16 24 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 25 H 0.06 0.83 7.68 -2.39 -0.02 0.81 16 26 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.15 2.97 6.30 -2.91 -0.02 2.95 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.51 8.04 -2.39 -0.02 1.49 16 30 H 0.07 1.66 6.47 -2.39 -0.02 1.65 16 31 H 0.09 2.67 6.72 -2.39 -0.02 2.65 16 32 H 0.04 1.42 7.18 -2.39 -0.02 1.40 16 33 H 0.05 2.31 7.42 -2.39 -0.02 2.29 16 34 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.03 1.63 8.11 -2.39 -0.02 1.61 16 36 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 37 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 38 H 0.06 2.45 7.87 -2.39 -0.02 2.43 16 39 H 0.12 3.76 7.99 -2.91 -0.02 3.73 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.07 1.59 7.53 -2.39 -0.02 1.57 16 42 H 0.07 1.53 8.09 -2.38 -0.02 1.51 16 Total: -1.00 -64.02 341.34 1.57 -62.45 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.99 Total: 17.08 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.91 Total: -37.29 kcal Atomic # 7 Polarization: -73.43 SS G_CDS: -5.48 Total: -78.91 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.88 Total: -8.74 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.02 1.57 -62.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203752207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.498 kcal (2) G-P(sol) polarization free energy of solvation -64.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds