Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 113.00241 * 2 1 4 4 N 1.46892 * 109.47439 * 306.52890 * 3 2 1 5 5 C 1.46896 * 111.00014 * 314.40572 * 4 3 2 6 6 C 1.50703 * 109.47469 * 293.95317 * 5 4 3 7 7 H 1.08007 * 119.99567 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47068 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47037 * 119.99667 * 10 8 6 13 13 H 1.48495 * 109.47171 * 239.99546 * 10 8 6 14 14 C 1.46898 * 111.00192 * 78.35944 * 4 3 2 15 15 C 1.50703 * 109.47461 * 78.01168 * 14 4 3 16 16 C 1.38231 * 120.00016 * 269.12396 * 15 14 4 17 17 C 1.38237 * 119.99487 * 179.76325 * 16 15 14 18 18 C 1.38236 * 120.00237 * 0.50225 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.75423 * 18 17 16 20 20 C 1.38236 * 119.99499 * 89.39209 * 15 14 4 21 21 C 1.54043 * 113.81408 * 228.01642 * 2 1 3 22 22 O 1.44178 * 85.51498 * 268.35520 * 21 2 1 23 23 C 1.44171 * 93.34342 * 335.80693 * 22 21 2 24 24 H 1.08998 * 109.47109 * 303.63798 * 1 2 3 25 25 H 1.09010 * 109.46973 * 63.63117 * 1 2 3 26 26 H 1.08994 * 109.47465 * 183.63242 * 1 2 3 27 27 H 1.09003 * 109.46763 * 66.52887 * 3 2 1 28 28 H 1.09007 * 109.47252 * 186.52521 * 3 2 1 29 29 H 1.09004 * 109.47009 * 53.95269 * 5 4 3 30 30 H 1.09003 * 109.47158 * 173.95387 * 5 4 3 31 31 H 0.96991 * 119.99890 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47736 * 198.01693 * 14 4 3 33 33 H 1.09007 * 109.46988 * 318.01308 * 14 4 3 34 34 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.99696 * 180.22758 * 17 16 15 36 36 H 1.08001 * 119.99871 * 179.71974 * 18 17 16 37 37 H 1.08003 * 120.00234 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00304 * 0.02562 * 20 15 14 39 39 H 1.08997 * 113.86393 * 22.50496 * 21 2 1 40 40 H 1.09000 * 113.86099 * 154.21087 * 21 2 1 41 41 H 1.09007 * 113.86972 * 270.05069 * 23 22 21 42 42 H 1.08998 * 113.98625 * 138.35766 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.5604 2.1812 -1.1128 5 6 1.5529 1.3922 -2.3519 6 6 2.9711 1.1261 -2.7867 7 1 3.7956 1.5056 -2.2012 8 6 3.2161 0.3991 -3.9322 9 7 2.2122 -0.0626 -4.6454 10 14 4.9741 0.0687 -4.4706 11 1 5.9133 0.6912 -3.5033 12 1 5.2102 -1.3966 -4.5177 13 1 5.1962 0.6494 -5.8192 14 6 0.2110 2.6613 -0.7863 15 6 0.3103 3.8601 0.1216 16 6 0.3120 3.6898 1.4934 17 6 0.4080 4.7891 2.3261 18 6 0.4918 6.0593 1.7871 19 6 0.4847 6.2298 0.4154 20 6 0.3940 5.1302 -0.4174 21 6 2.1519 -0.9427 -1.0476 22 8 2.1442 -1.9306 0.0026 23 6 2.1519 -0.9399 1.0500 24 1 -0.3633 0.5693 0.8556 25 1 -0.3633 0.4565 -0.9208 26 1 -0.3634 -1.0255 0.0651 27 1 1.8930 1.9027 0.9427 28 1 3.2097 1.3438 -0.1168 29 1 1.0429 0.4450 -2.1764 30 1 1.0316 1.9464 -3.1324 31 1 2.3845 -0.5743 -5.4511 32 1 -0.3066 2.9421 -1.7035 33 1 -0.3445 1.8697 -0.2834 34 1 0.2418 2.6978 1.9145 35 1 0.4131 4.6558 3.3978 36 1 0.5622 6.9184 2.4378 37 1 0.5497 7.2222 -0.0058 38 1 0.3879 5.2635 -1.4891 39 1 1.4875 -1.1777 -1.8791 40 1 3.1511 -0.6477 -1.3681 41 1 3.1511 -0.6440 1.3698 42 1 1.4884 -1.1709 1.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207788808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = 37.541045 kcal Electronic energy + Delta-G solvation = -22333.236998 eV Core-core repulsion = 19280.391131 eV Total energy + Delta-G solvation = -3052.845867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50873 -38.97146 -36.60024 -32.89207 -31.72271 -30.69871 -30.41582 -27.53138 -27.43072 -25.60436 -24.71837 -23.74731 -22.25078 -21.17181 -20.08215 -18.26899 -16.72109 -16.27630 -15.72490 -15.60515 -15.16416 -14.98120 -14.76790 -14.59642 -14.10724 -13.59856 -13.22010 -13.14256 -12.90097 -12.36633 -12.20900 -11.80979 -11.73838 -11.43164 -11.26002 -11.09622 -11.00612 -10.85767 -10.55392 -10.47972 -10.42360 -10.24080 -9.92016 -9.60927 -9.20922 -8.98193 -8.67236 -8.48484 -8.41236 -7.06544 -6.08579 -4.07147 1.61398 1.64607 3.27980 3.37051 3.40219 4.01362 4.37615 4.41108 4.76786 5.08422 5.09519 5.16514 5.24416 5.28694 5.30668 5.35161 5.60251 5.64147 5.70683 5.76607 5.91238 5.92775 5.98242 6.00636 6.15609 6.28079 6.29934 6.31846 6.46676 6.51553 6.58151 6.68757 6.71801 6.79110 6.87982 6.96914 7.11151 7.24893 7.26898 7.35007 7.76370 8.04471 8.15959 8.49819 8.98504 9.54388 11.01246 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.006271 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.775424 B = 4463.673030 C = 5458.226874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.158 4.158 3 C 0.076 3.924 4 N -0.523 5.523 5 C 0.176 3.824 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.056 3.944 15 C -0.055 4.055 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.102 4.102 21 C 0.065 3.935 22 O -0.404 6.404 23 C 0.042 3.958 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.016 0.984 30 H 0.025 0.975 31 H 0.261 0.739 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 6.176 11.749 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.053 4.053 4 N -0.246 5.246 5 C 0.051 3.949 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.072 4.072 15 C -0.055 4.055 16 C -0.137 4.137 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.010 4.010 22 O -0.324 6.324 23 C -0.036 4.036 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.410 6.203 11.463 13.760 hybrid contribution 0.506 -0.605 -0.342 0.860 sum -3.904 5.598 11.121 13.048 Atomic orbital electron populations 1.21891 0.93732 1.01491 1.01804 1.24172 0.96590 0.98492 0.96738 1.22109 0.99910 0.89351 0.93964 1.62269 1.17803 1.40190 1.04326 1.20173 0.97927 0.91772 0.84997 1.21106 0.92122 1.32475 1.08377 0.91968 1.24913 0.96870 0.96039 0.96401 1.69939 1.30318 1.36703 1.16337 0.86597 0.85171 0.77968 0.78735 1.19667 1.20977 1.21034 1.21736 0.93107 0.94332 0.98014 1.20042 0.96614 0.95162 0.93722 1.21041 1.00990 0.98367 0.93273 1.21039 1.01130 0.92856 0.99240 1.21019 1.02021 0.96944 0.95188 1.21106 1.00775 0.98575 0.93675 1.21089 0.98983 0.92054 0.99908 1.24573 1.02962 0.83315 0.90105 1.89579 1.95875 1.29089 1.17829 1.23844 0.99555 0.87968 0.92191 0.92741 0.90700 0.92648 0.92430 0.90559 0.96650 0.95645 0.92905 0.90972 0.91616 0.86638 0.86733 0.86821 0.86613 0.86119 0.88680 0.87622 0.90973 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.02 37.16 0.26 -1.85 16 2 C -0.16 -2.76 0.75 -153.43 -0.11 -2.87 16 3 C 0.08 1.36 4.78 -3.83 -0.02 1.34 16 4 N -0.52 -10.33 4.61 -237.52 -1.09 -11.43 16 5 C 0.18 4.11 3.91 -4.98 -0.02 4.09 16 6 C -0.50 -12.84 5.83 -34.44 -0.20 -13.04 16 7 H 0.06 1.63 7.16 -52.48 -0.38 1.25 16 8 C 0.06 1.57 5.42 -17.82 -0.10 1.47 16 9 N -0.89 -24.76 13.29 55.43 0.74 -24.03 16 10 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.06 0.94 4.38 -4.98 -0.02 0.91 16 15 C -0.05 -0.84 5.20 -104.62 -0.54 -1.39 16 16 C -0.12 -1.63 8.40 -39.58 -0.33 -1.96 16 17 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 18 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 19 C -0.12 -1.60 10.05 -39.58 -0.40 -1.99 16 20 C -0.10 -1.51 9.70 -39.58 -0.38 -1.90 16 21 C 0.07 1.37 5.70 37.61 0.21 1.58 16 22 O -0.40 -8.12 12.37 -35.23 -0.44 -8.55 16 23 C 0.04 0.68 8.36 37.61 0.31 1.00 16 24 H 0.05 0.74 7.35 -51.93 -0.38 0.36 16 25 H 0.07 1.29 4.74 -51.92 -0.25 1.04 16 26 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 27 H 0.06 0.93 5.70 -51.93 -0.30 0.63 16 28 H 0.08 1.49 7.25 -51.92 -0.38 1.11 16 29 H 0.02 0.38 3.13 -51.93 -0.16 0.22 16 30 H 0.03 0.66 7.81 -51.93 -0.41 0.26 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.07 1.25 7.64 -51.93 -0.40 0.86 16 33 H 0.07 1.04 3.38 -51.92 -0.18 0.86 16 34 H 0.12 1.46 7.44 -52.49 -0.39 1.07 16 35 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.11 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.10 2.22 6.84 -51.93 -0.36 1.86 16 40 H 0.11 2.41 6.13 -51.93 -0.32 2.09 16 41 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -27.78 320.09 -9.09 -36.87 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.97 Total: 5.05 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -2.14 Total: -18.55 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: -0.36 Total: -35.45 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.44 Total: -8.55 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.78 -9.09 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207788808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.413 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds