Wall clock time and date at job start Mon Mar 30 2020 01:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 113.00241 * 2 1 4 4 N 1.46892 * 109.47439 * 306.52890 * 3 2 1 5 5 C 1.46896 * 111.00014 * 314.40572 * 4 3 2 6 6 C 1.50703 * 109.47469 * 293.95317 * 5 4 3 7 7 H 1.08007 * 119.99567 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47068 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47037 * 119.99667 * 10 8 6 13 13 H 1.48495 * 109.47171 * 239.99546 * 10 8 6 14 14 C 1.46898 * 111.00192 * 78.35944 * 4 3 2 15 15 C 1.50703 * 109.47461 * 78.01168 * 14 4 3 16 16 C 1.38231 * 120.00016 * 269.12396 * 15 14 4 17 17 C 1.38237 * 119.99487 * 179.76325 * 16 15 14 18 18 C 1.38236 * 120.00237 * 0.50225 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.75423 * 18 17 16 20 20 C 1.38236 * 119.99499 * 89.39209 * 15 14 4 21 21 C 1.54043 * 113.81408 * 228.01642 * 2 1 3 22 22 O 1.44178 * 85.51498 * 268.35520 * 21 2 1 23 23 C 1.44171 * 93.34342 * 335.80693 * 22 21 2 24 24 H 1.08998 * 109.47109 * 303.63798 * 1 2 3 25 25 H 1.09010 * 109.46973 * 63.63117 * 1 2 3 26 26 H 1.08994 * 109.47465 * 183.63242 * 1 2 3 27 27 H 1.09003 * 109.46763 * 66.52887 * 3 2 1 28 28 H 1.09007 * 109.47252 * 186.52521 * 3 2 1 29 29 H 1.09004 * 109.47009 * 53.95269 * 5 4 3 30 30 H 1.09003 * 109.47158 * 173.95387 * 5 4 3 31 31 H 0.96991 * 119.99890 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47736 * 198.01693 * 14 4 3 33 33 H 1.09007 * 109.46988 * 318.01308 * 14 4 3 34 34 H 1.07994 * 119.99970 * 359.97438 * 16 15 14 35 35 H 1.07998 * 119.99696 * 180.22758 * 17 16 15 36 36 H 1.08001 * 119.99871 * 179.71974 * 18 17 16 37 37 H 1.08003 * 120.00234 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.00304 * 0.02562 * 20 15 14 39 39 H 1.08997 * 113.86393 * 22.50496 * 21 2 1 40 40 H 1.09000 * 113.86099 * 154.21087 * 21 2 1 41 41 H 1.09007 * 113.86972 * 270.05069 * 23 22 21 42 42 H 1.08998 * 113.98625 * 138.35766 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4083 0.0000 4 7 1.5604 2.1812 -1.1128 5 6 1.5529 1.3922 -2.3519 6 6 2.9711 1.1261 -2.7867 7 1 3.7956 1.5056 -2.2012 8 6 3.2161 0.3991 -3.9322 9 7 2.2122 -0.0626 -4.6454 10 14 4.9741 0.0687 -4.4706 11 1 5.9133 0.6912 -3.5033 12 1 5.2102 -1.3966 -4.5177 13 1 5.1962 0.6494 -5.8192 14 6 0.2110 2.6613 -0.7863 15 6 0.3103 3.8601 0.1216 16 6 0.3120 3.6898 1.4934 17 6 0.4080 4.7891 2.3261 18 6 0.4918 6.0593 1.7871 19 6 0.4847 6.2298 0.4154 20 6 0.3940 5.1302 -0.4174 21 6 2.1519 -0.9427 -1.0476 22 8 2.1442 -1.9306 0.0026 23 6 2.1519 -0.9399 1.0500 24 1 -0.3633 0.5693 0.8556 25 1 -0.3633 0.4565 -0.9208 26 1 -0.3634 -1.0255 0.0651 27 1 1.8930 1.9027 0.9427 28 1 3.2097 1.3438 -0.1168 29 1 1.0429 0.4450 -2.1764 30 1 1.0316 1.9464 -3.1324 31 1 2.3845 -0.5743 -5.4511 32 1 -0.3066 2.9421 -1.7035 33 1 -0.3445 1.8697 -0.2834 34 1 0.2418 2.6978 1.9145 35 1 0.4131 4.6558 3.3978 36 1 0.5622 6.9184 2.4378 37 1 0.5497 7.2222 -0.0058 38 1 0.3879 5.2635 -1.4891 39 1 1.4875 -1.1777 -1.8791 40 1 3.1511 -0.6477 -1.3681 41 1 3.1511 -0.6440 1.3698 42 1 1.4884 -1.1709 1.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207788808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:58 Heat of formation + Delta-G solvation = 20.834793 kcal Electronic energy + Delta-G solvation = -22333.961435 eV Core-core repulsion = 19280.391131 eV Total energy + Delta-G solvation = -3053.570304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99879 -40.08023 -38.08254 -34.83460 -33.00560 -31.98539 -31.62365 -29.22951 -28.83865 -27.13052 -26.10207 -25.47313 -23.28273 -22.58356 -21.47045 -19.74610 -18.41958 -17.62222 -17.26098 -17.07178 -16.66454 -16.48939 -16.03983 -15.89629 -15.70301 -15.02083 -14.64160 -14.34256 -14.05073 -13.88277 -13.51744 -13.33050 -13.12967 -12.99471 -12.84139 -12.71103 -12.63043 -12.29519 -12.20460 -11.95878 -11.80370 -11.65768 -11.50467 -11.26547 -10.99030 -10.61517 -10.41080 -9.68453 -9.53024 -8.65108 -8.13855 -6.17670 0.57837 0.62831 1.38085 1.41874 1.51192 2.41462 2.90719 2.97713 3.19332 3.32851 3.68063 3.91353 4.02274 4.09756 4.22783 4.28635 4.30605 4.38035 4.49231 4.58277 4.61362 4.70505 4.74317 4.81174 4.86471 4.89846 4.96877 5.01805 5.09722 5.22314 5.25683 5.28929 5.37429 5.40270 5.47843 5.53300 5.68536 5.72604 5.73833 5.89111 6.14676 6.25399 6.46055 6.73261 6.95064 7.47318 8.95318 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.006271 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.775424 B = 4463.673030 C = 5458.226874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.149 4.149 3 C 0.081 3.919 4 N -0.534 5.534 5 C 0.192 3.808 6 C -0.500 4.500 7 H 0.055 0.945 8 C 0.016 3.984 9 N -0.926 5.926 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.061 3.939 15 C -0.075 4.075 16 C -0.124 4.124 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.128 4.128 20 C -0.125 4.125 21 C 0.064 3.936 22 O -0.422 6.422 23 C 0.049 3.951 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.012 0.988 30 H -0.011 1.011 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.130 0.870 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 7.167 14.993 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.047 4.047 4 N -0.257 5.257 5 C 0.066 3.934 6 C -0.538 4.538 7 H 0.073 0.927 8 C -0.183 4.183 9 N -0.566 5.566 10 Si 0.768 3.232 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.066 4.066 15 C -0.076 4.076 16 C -0.142 4.142 17 C -0.141 4.141 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.143 4.143 21 C -0.012 4.012 22 O -0.342 6.342 23 C -0.027 4.027 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.148 0.852 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.263 7.207 14.729 16.943 hybrid contribution 0.436 -0.848 -1.276 1.593 sum -3.827 6.359 13.453 15.364 Atomic orbital electron populations 1.21853 0.92394 1.02004 1.02205 1.24098 0.97553 0.97709 0.95712 1.22071 0.98705 0.89717 0.94257 1.62122 1.20074 1.39772 1.03727 1.19817 0.96213 0.91364 0.85980 1.21277 0.92902 1.31598 1.08037 0.92711 1.25553 0.99945 0.96103 0.96673 1.70043 1.32036 1.37741 1.16820 0.85742 0.81489 0.77689 0.78267 1.19016 1.20883 1.20941 1.21689 0.91389 0.95586 0.97923 1.19927 0.98865 0.94350 0.94430 1.21210 1.00810 0.99761 0.92413 1.21418 0.99623 0.92353 1.00670 1.21429 1.00299 0.98131 0.95028 1.21365 1.00155 0.98782 0.94262 1.21160 1.00424 0.92962 0.99786 1.24216 1.01244 0.85360 0.90360 1.89554 1.95942 1.30088 1.18638 1.24106 1.01026 0.85767 0.91849 0.89488 0.92643 0.92497 0.89617 0.92410 0.97104 0.99312 0.93029 0.92844 0.90170 0.85244 0.83725 0.83834 0.84749 0.87475 0.91979 0.90000 0.89503 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 7.02 71.98 0.50 -3.38 16 2 C -0.15 -5.04 0.75 -51.48 -0.04 -5.08 16 3 C 0.08 2.82 4.78 86.30 0.41 3.24 16 4 N -0.53 -21.44 4.61 -905.36 -4.17 -25.61 16 5 C 0.19 9.40 3.91 85.56 0.33 9.73 16 6 C -0.50 -26.46 5.83 25.60 0.15 -26.31 16 7 H 0.05 2.94 7.16 -2.91 -0.02 2.92 16 8 C 0.02 0.86 5.42 84.65 0.46 1.32 16 9 N -0.93 -53.36 13.29 21.45 0.28 -53.08 16 10 Si 0.94 43.70 29.54 68.60 2.03 45.73 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 C 0.06 2.07 4.38 85.56 0.37 2.45 16 15 C -0.08 -2.23 5.20 -19.87 -0.10 -2.34 16 16 C -0.12 -3.02 8.40 22.27 0.19 -2.83 16 17 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 18 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 19 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 20 C -0.12 -3.66 9.70 22.27 0.22 -3.44 16 21 C 0.06 2.74 5.70 72.28 0.41 3.15 16 22 O -0.42 -16.67 12.37 -148.98 -1.84 -18.51 16 23 C 0.05 1.46 8.36 72.27 0.60 2.07 16 24 H 0.09 2.07 7.35 -2.39 -0.02 2.05 16 25 H 0.05 1.91 4.74 -2.38 -0.01 1.90 16 26 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 27 H 0.09 2.52 5.70 -2.39 -0.01 2.50 16 28 H 0.06 2.23 7.25 -2.38 -0.02 2.21 16 29 H 0.01 0.57 3.13 -2.38 -0.01 0.57 16 30 H -0.01 -0.63 7.81 -2.39 -0.02 -0.64 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 32 H 0.05 1.97 7.64 -2.39 -0.02 1.95 16 33 H 0.08 2.45 3.38 -2.38 -0.01 2.44 16 34 H 0.13 2.73 7.44 -2.91 -0.02 2.70 16 35 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.11 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.06 3.06 6.84 -2.39 -0.02 3.04 16 40 H 0.08 3.88 6.13 -2.39 -0.01 3.86 16 41 H 0.09 2.33 8.10 -2.38 -0.02 2.31 16 42 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 Total: -1.00 -62.21 320.09 1.49 -60.71 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.01 Total: 19.73 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 4.18 Total: -28.98 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -3.88 Total: -78.69 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.84 Total: -18.51 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -62.21 1.49 -60.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207788808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.548 kcal (2) G-P(sol) polarization free energy of solvation -62.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds