Wall clock time and date at job start Mon Mar 30 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47299 * 2 1 4 4 C 1.38235 * 120.00107 * 269.73078 * 3 2 1 5 5 C 1.38243 * 120.00136 * 179.76420 * 4 3 2 6 6 C 1.38238 * 119.99627 * 0.50692 * 5 4 3 7 7 C 1.50693 * 119.99647 * 179.72354 * 6 5 4 8 8 O 1.42903 * 109.47306 * 270.02040 * 7 6 5 9 9 C 1.42895 * 114.00133 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.64287 * 333.14238 * 9 8 7 11 11 C 1.55158 * 110.71889 * 209.99671 * 9 8 7 12 12 C 1.54915 * 101.58402 * 206.13421 * 11 9 8 13 13 N 1.47432 * 104.82935 * 37.01201 * 12 11 9 14 14 C 1.36928 * 125.64657 * 155.91543 * 13 12 11 15 15 H 1.08005 * 120.00362 * 342.05206 * 14 13 12 16 16 C 1.38816 * 120.00015 * 162.04894 * 14 13 12 17 17 N 1.31618 * 119.99905 * 156.30564 * 16 14 13 18 18 Si 1.86803 * 119.99704 * 336.30777 * 16 14 13 19 19 H 1.48496 * 109.47103 * 84.67640 * 18 16 14 20 20 H 1.48506 * 109.46826 * 204.67165 * 18 16 14 21 21 H 1.48491 * 109.47090 * 324.66879 * 18 16 14 22 22 C 1.47020 * 108.70258 * 335.87206 * 13 12 11 23 23 C 1.38241 * 119.99854 * 359.74675 * 6 5 4 24 24 C 1.38234 * 120.00270 * 359.97438 * 23 6 5 25 25 H 1.09001 * 109.46785 * 299.99694 * 1 2 3 26 26 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46913 * 59.99968 * 1 2 3 28 28 H 1.08994 * 109.46796 * 120.00576 * 2 1 3 29 29 H 1.09001 * 109.46785 * 240.00306 * 2 1 3 30 30 H 1.08002 * 119.99963 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.99767 * 180.22715 * 5 4 3 32 32 H 1.08997 * 109.47475 * 30.01818 * 7 6 5 33 33 H 1.09003 * 109.47015 * 150.02191 * 7 6 5 34 34 H 1.08989 * 111.00837 * 324.21213 * 11 9 8 35 35 H 1.09004 * 111.00330 * 88.02939 * 11 9 8 36 36 H 1.08990 * 110.36563 * 155.84898 * 12 11 9 37 37 H 1.09002 * 110.36701 * 278.06749 * 12 11 9 38 38 H 0.96997 * 119.99740 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.88105 * 241.64248 * 22 13 12 40 40 H 1.09002 * 109.88662 * 120.47570 * 22 13 12 41 41 H 1.08000 * 119.99576 * 179.97438 * 23 6 5 42 42 H 1.07997 * 119.99731 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7244 3.3755 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4580 5.4475 0.0000 8 8 4.8871 5.4466 -0.0001 9 6 5.4691 6.7517 0.0005 10 1 4.7945 7.4735 -0.4600 11 6 6.8405 6.7414 -0.7251 12 6 7.5585 7.9367 -0.0502 13 7 7.1282 7.8885 1.3591 14 6 7.8140 8.4142 2.4213 15 1 8.8629 8.6522 2.3226 16 6 7.1612 8.6412 3.6252 17 7 7.8478 8.6903 4.7470 18 14 5.3083 8.8771 3.6528 19 1 4.6412 7.5511 3.6968 20 1 4.9273 9.6629 4.8539 21 1 4.8837 9.6047 2.4300 22 6 5.8404 7.1834 1.4349 23 6 2.7241 3.3755 1.1972 24 6 2.2624 2.0725 1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.0927 1.5598 -2.1324 31 1 2.9050 3.8843 -2.1324 32 1 3.0951 5.9616 -0.8899 33 1 3.0951 5.9616 0.8900 34 1 7.3741 5.8095 -0.5389 35 1 6.7179 6.9120 -1.7947 36 1 8.6397 7.8188 -0.1209 37 1 7.2489 8.8747 -0.5112 38 1 7.3915 8.8486 5.5882 39 1 5.0750 7.8510 1.8309 40 1 5.9355 6.3051 2.0734 41 1 2.9045 3.8845 2.1325 42 1 2.0825 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222841621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:04 Heat of formation + Delta-G solvation = 1.050774 kcal Electronic energy + Delta-G solvation = -20789.420113 eV Core-core repulsion = 17734.991909 eV Total energy + Delta-G solvation = -3054.428204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.69940 -38.48754 -36.25185 -34.39151 -32.34079 -31.00924 -30.57317 -29.46373 -27.83963 -26.04804 -24.13589 -23.02656 -22.81621 -20.80678 -20.69051 -20.25146 -17.09507 -16.74882 -16.21740 -16.03422 -15.72807 -15.32297 -14.41096 -14.12286 -14.04624 -13.79000 -13.67921 -13.33373 -13.14359 -12.98318 -12.57191 -12.38789 -12.15069 -11.98206 -11.62107 -11.53016 -11.32107 -11.11900 -11.03095 -10.93466 -10.78489 -10.54389 -10.25794 -10.04255 -9.45154 -9.07595 -8.97609 -8.69486 -8.59730 -7.05201 -5.93698 -3.21990 1.17137 1.34690 3.35503 3.46008 3.48451 3.51323 4.11633 4.54803 4.56739 4.62824 4.87973 4.90838 4.92438 4.96842 5.09232 5.16799 5.26407 5.29074 5.34197 5.36022 5.45293 5.49824 5.52854 5.58960 5.62168 5.72460 5.86447 5.91024 5.97451 6.00808 6.10377 6.26605 6.32363 6.39444 6.50107 6.54335 6.57388 6.66532 6.81098 6.91794 7.51515 7.72335 8.32464 8.84624 9.70632 10.19007 11.22887 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003840 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.041139 B = 7289.594010 C = 7954.097023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.082 4.082 4 C -0.123 4.123 5 C -0.096 4.096 6 C -0.088 4.088 7 C 0.099 3.901 8 O -0.368 6.368 9 C 0.075 3.925 10 H 0.067 0.933 11 C -0.126 4.126 12 C 0.133 3.867 13 N -0.608 5.608 14 C -0.242 4.242 15 H 0.094 0.906 16 C 0.021 3.979 17 N -0.906 5.906 18 Si 0.886 3.114 19 H -0.286 1.286 20 H -0.303 1.303 21 H -0.281 1.281 22 C 0.102 3.898 23 C -0.094 4.094 24 C -0.121 4.121 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 -14.209 -12.959 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.141 4.141 5 C -0.114 4.114 6 C -0.088 4.088 7 C 0.022 3.978 8 O -0.286 6.286 9 C 0.017 3.983 10 H 0.085 0.915 11 C -0.164 4.164 12 C 0.008 3.992 13 N -0.336 5.336 14 C -0.369 4.369 15 H 0.112 0.888 16 C -0.177 4.177 17 N -0.550 5.550 18 Si 0.718 3.282 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.208 1.208 22 C -0.023 4.023 23 C -0.112 4.112 24 C -0.139 4.139 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.290 -14.313 -12.706 23.885 hybrid contribution -1.245 0.539 0.235 1.377 sum -15.535 -13.775 -12.471 24.220 Atomic orbital electron populations 1.21748 0.94768 1.01600 1.02246 1.20546 0.96122 0.92741 1.02852 1.19912 0.98856 0.96122 0.93273 1.20968 1.00891 0.94829 0.97458 1.21028 0.98257 0.94612 0.97510 1.19641 1.00010 0.95639 0.93516 1.21348 0.82561 0.93052 1.00804 1.87997 1.17810 1.27881 1.94958 1.23194 0.94742 0.83727 0.96640 0.91493 1.22861 0.94695 1.00564 0.98290 1.21621 0.98011 0.94371 0.85228 1.44664 1.21618 1.64733 1.02554 1.18674 0.93394 1.36862 0.87943 0.88811 1.24948 0.97416 1.00266 0.95081 1.69860 1.35667 1.52170 0.97314 0.86900 0.88018 0.77690 0.75561 1.21356 1.23136 1.20797 1.22061 0.89291 0.96031 0.94961 1.21135 0.97487 0.94657 0.97894 1.21006 1.00484 0.94809 0.97574 0.92529 0.92467 0.92584 0.91013 0.91078 0.86163 0.85984 0.92608 0.92521 0.90217 0.91174 0.92789 0.95623 0.92716 0.95816 0.93111 0.85740 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.65 16 2 C -0.09 -0.67 6.07 -27.88 -0.17 -0.84 16 3 C -0.08 -0.85 5.13 -104.63 -0.54 -1.39 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.69 16 5 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 6 C -0.09 -1.19 5.51 -104.62 -0.58 -1.77 16 7 C 0.10 1.43 5.90 36.00 0.21 1.64 16 8 O -0.37 -6.47 10.05 -35.23 -0.35 -6.83 16 9 C 0.08 1.38 3.45 -24.89 -0.09 1.29 16 10 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 11 C -0.13 -2.15 6.81 -24.58 -0.17 -2.31 16 12 C 0.13 2.68 7.23 -2.52 -0.02 2.66 16 13 N -0.61 -15.37 3.21 -170.06 -0.55 -15.91 16 14 C -0.24 -7.08 10.56 -15.06 -0.16 -7.24 16 15 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 16 C 0.02 0.64 5.43 -17.43 -0.09 0.55 16 17 N -0.91 -28.56 13.97 55.49 0.78 -27.78 16 18 Si 0.89 23.37 24.39 -169.99 -4.15 19.23 16 19 H -0.29 -7.32 6.84 56.52 0.39 -6.94 16 20 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 21 H -0.28 -7.28 6.87 56.52 0.39 -6.89 16 22 C 0.10 2.36 4.93 -3.06 -0.02 2.35 16 23 C -0.09 -1.24 9.70 -39.58 -0.38 -1.62 16 24 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 33 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.08 1.40 8.14 -51.94 -0.42 0.98 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 39 H 0.02 0.59 3.52 -51.93 -0.18 0.41 16 40 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 41 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 339.47 15.07 5.12 5.12 Total: -1.00 -32.84 339.47 -8.86 -41.70 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.92 Total: -3.22 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.78 Total: -12.30 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.23 Total: -43.70 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.35 Total: -6.83 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.15 Total: 19.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.84 -8.86 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222841621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.746 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds