Wall clock time and date at job start Mon Mar 30 2020 02:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47299 * 2 1 4 4 C 1.38235 * 120.00107 * 269.73078 * 3 2 1 5 5 C 1.38243 * 120.00136 * 179.76420 * 4 3 2 6 6 C 1.38238 * 119.99627 * 0.50692 * 5 4 3 7 7 C 1.50693 * 119.99647 * 179.72354 * 6 5 4 8 8 O 1.42903 * 109.47306 * 270.02040 * 7 6 5 9 9 C 1.42895 * 114.00133 * 180.02562 * 8 7 6 10 10 H 1.08997 * 110.64287 * 333.14238 * 9 8 7 11 11 C 1.55158 * 110.71889 * 209.99671 * 9 8 7 12 12 C 1.54915 * 101.58402 * 206.13421 * 11 9 8 13 13 N 1.47432 * 104.82935 * 37.01201 * 12 11 9 14 14 C 1.36928 * 125.64657 * 155.91543 * 13 12 11 15 15 H 1.08005 * 120.00362 * 342.05206 * 14 13 12 16 16 C 1.38816 * 120.00015 * 162.04894 * 14 13 12 17 17 N 1.31618 * 119.99905 * 156.30564 * 16 14 13 18 18 Si 1.86803 * 119.99704 * 336.30777 * 16 14 13 19 19 H 1.48496 * 109.47103 * 84.67640 * 18 16 14 20 20 H 1.48506 * 109.46826 * 204.67165 * 18 16 14 21 21 H 1.48491 * 109.47090 * 324.66879 * 18 16 14 22 22 C 1.47020 * 108.70258 * 335.87206 * 13 12 11 23 23 C 1.38241 * 119.99854 * 359.74675 * 6 5 4 24 24 C 1.38234 * 120.00270 * 359.97438 * 23 6 5 25 25 H 1.09001 * 109.46785 * 299.99694 * 1 2 3 26 26 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46913 * 59.99968 * 1 2 3 28 28 H 1.08994 * 109.46796 * 120.00576 * 2 1 3 29 29 H 1.09001 * 109.46785 * 240.00306 * 2 1 3 30 30 H 1.08002 * 119.99963 * 359.97438 * 4 3 2 31 31 H 1.07992 * 119.99767 * 180.22715 * 5 4 3 32 32 H 1.08997 * 109.47475 * 30.01818 * 7 6 5 33 33 H 1.09003 * 109.47015 * 150.02191 * 7 6 5 34 34 H 1.08989 * 111.00837 * 324.21213 * 11 9 8 35 35 H 1.09004 * 111.00330 * 88.02939 * 11 9 8 36 36 H 1.08990 * 110.36563 * 155.84898 * 12 11 9 37 37 H 1.09002 * 110.36701 * 278.06749 * 12 11 9 38 38 H 0.96997 * 119.99740 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.88105 * 241.64248 * 22 13 12 40 40 H 1.09002 * 109.88662 * 120.47570 * 22 13 12 41 41 H 1.08000 * 119.99576 * 179.97438 * 23 6 5 42 42 H 1.07997 * 119.99731 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2682 2.0705 -1.1971 5 6 2.7244 3.3755 -1.1972 6 6 2.9548 4.0271 0.0000 7 6 3.4580 5.4475 0.0000 8 8 4.8871 5.4466 -0.0001 9 6 5.4691 6.7517 0.0005 10 1 4.7945 7.4735 -0.4600 11 6 6.8405 6.7414 -0.7251 12 6 7.5585 7.9367 -0.0502 13 7 7.1282 7.8885 1.3591 14 6 7.8140 8.4142 2.4213 15 1 8.8629 8.6522 2.3226 16 6 7.1612 8.6412 3.6252 17 7 7.8478 8.6903 4.7470 18 14 5.3083 8.8771 3.6528 19 1 4.6412 7.5511 3.6968 20 1 4.9273 9.6629 4.8539 21 1 4.8837 9.6047 2.4300 22 6 5.8404 7.1834 1.4349 23 6 2.7241 3.3755 1.1972 24 6 2.2624 2.0725 1.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.0927 1.5598 -2.1324 31 1 2.9050 3.8843 -2.1324 32 1 3.0951 5.9616 -0.8899 33 1 3.0951 5.9616 0.8900 34 1 7.3741 5.8095 -0.5389 35 1 6.7179 6.9120 -1.7947 36 1 8.6397 7.8188 -0.1209 37 1 7.2489 8.8747 -0.5112 38 1 7.3915 8.8486 5.5882 39 1 5.0750 7.8510 1.8309 40 1 5.9355 6.3051 2.0734 41 1 2.9045 3.8845 2.1325 42 1 2.0825 1.5634 2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222841621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:03 Heat of formation + Delta-G solvation = -18.434248 kcal Electronic energy + Delta-G solvation = -20790.265047 eV Core-core repulsion = 17734.991909 eV Total energy + Delta-G solvation = -3055.273138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.65471 -39.89344 -37.73232 -35.26261 -34.39527 -31.87040 -31.81676 -30.96106 -29.45913 -27.08487 -26.03457 -23.80738 -23.68235 -22.48819 -21.97587 -21.44352 -19.08958 -18.13036 -17.74227 -17.20881 -16.79221 -16.26454 -15.96175 -15.40859 -15.36181 -15.05471 -14.71077 -14.52948 -14.33324 -14.23150 -14.13153 -13.81435 -13.46024 -13.09991 -13.06055 -12.79738 -12.59530 -12.49786 -12.39412 -12.17068 -12.02836 -11.71125 -11.67039 -11.65512 -11.37311 -10.87558 -10.49861 -9.85536 -9.56910 -9.14020 -8.24468 -5.49099 0.27421 0.47065 1.23367 1.29368 1.40406 2.35263 2.44855 2.92160 3.03474 3.41490 3.65847 3.74429 3.84057 3.86114 3.97629 4.08560 4.10450 4.15126 4.35269 4.39490 4.43344 4.51261 4.52936 4.57360 4.70739 4.72432 4.76044 4.84735 4.98328 4.99120 5.03715 5.08754 5.10711 5.18967 5.31101 5.38431 5.47003 5.62405 5.65323 5.69191 6.03954 6.06948 6.21345 6.69621 7.48000 8.04328 8.95796 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.003840 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.041139 B = 7289.594010 C = 7954.097023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.082 4.082 4 C -0.125 4.125 5 C -0.099 4.099 6 C -0.110 4.110 7 C 0.094 3.906 8 O -0.381 6.381 9 C 0.086 3.914 10 H 0.096 0.904 11 C -0.111 4.111 12 C 0.125 3.875 13 N -0.628 5.628 14 C -0.237 4.237 15 H 0.066 0.934 16 C -0.038 4.038 17 N -0.952 5.952 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.304 1.304 21 H -0.269 1.269 22 C 0.095 3.905 23 C -0.117 4.117 24 C -0.130 4.130 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.016 0.984 40 H 0.020 0.980 41 H 0.112 0.888 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 -15.461 -15.932 27.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.082 4.082 4 C -0.143 4.143 5 C -0.117 4.117 6 C -0.110 4.110 7 C 0.018 3.982 8 O -0.300 6.300 9 C 0.028 3.972 10 H 0.113 0.887 11 C -0.149 4.149 12 C 0.001 3.999 13 N -0.356 5.356 14 C -0.366 4.366 15 H 0.084 0.916 16 C -0.233 4.233 17 N -0.599 5.599 18 Si 0.780 3.220 19 H -0.208 1.208 20 H -0.232 1.232 21 H -0.195 1.195 22 C -0.030 4.030 23 C -0.135 4.135 24 C -0.148 4.148 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.165 0.835 31 H 0.158 0.842 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.130 0.870 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.390 -15.575 -15.728 27.543 hybrid contribution -0.542 0.832 1.125 1.500 sum -16.932 -14.743 -14.603 26.782 Atomic orbital electron populations 1.21733 0.93986 1.02504 1.01923 1.20609 0.96690 0.91097 1.03769 1.20273 0.97713 0.97316 0.92865 1.21325 0.99868 0.94506 0.98584 1.21272 0.97816 0.95179 0.97472 1.19701 1.01443 0.95570 0.94322 1.21542 0.80882 0.94147 1.01591 1.87991 1.19818 1.27365 1.94789 1.23091 0.96116 0.84794 0.93230 0.88652 1.22814 0.93118 0.98548 1.00394 1.21894 0.98550 0.96767 0.82695 1.44809 1.22299 1.64604 1.03879 1.18674 0.92796 1.35728 0.89389 0.91610 1.25598 1.01769 1.01073 0.94820 1.69977 1.37514 1.54502 0.97911 0.85882 0.82673 0.77748 0.75737 1.20785 1.23247 1.19496 1.22159 0.88114 0.94419 0.98290 1.21224 0.98884 0.95702 0.97680 1.21215 1.00424 0.94319 0.98857 0.93240 0.90980 0.92543 0.90585 0.89731 0.83522 0.84194 0.89858 0.93569 0.91070 0.86574 0.92818 0.93707 0.92782 0.96691 0.96159 0.86978 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.90 71.98 0.71 -0.92 16 2 C -0.08 -1.10 6.07 29.85 0.18 -0.92 16 3 C -0.08 -1.54 5.13 -19.87 -0.10 -1.64 16 4 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 5 C -0.10 -2.10 9.70 22.27 0.22 -1.88 16 6 C -0.11 -2.86 5.51 -19.87 -0.11 -2.97 16 7 C 0.09 2.56 5.90 71.23 0.42 2.98 16 8 O -0.38 -12.69 10.05 -148.98 -1.50 -14.18 16 9 C 0.09 2.93 3.45 31.79 0.11 3.04 16 10 H 0.10 2.74 7.82 -2.39 -0.02 2.72 16 11 C -0.11 -3.42 6.81 31.99 0.22 -3.20 16 12 C 0.12 4.79 7.23 86.86 0.63 5.42 16 13 N -0.63 -31.63 3.21 -691.96 -2.22 -33.86 16 14 C -0.24 -14.23 10.56 84.04 0.89 -13.35 16 15 H 0.07 4.20 8.06 -2.91 -0.02 4.17 16 16 C -0.04 -2.32 5.43 84.86 0.46 -1.86 16 17 N -0.95 -62.07 13.97 21.65 0.30 -61.76 16 18 Si 0.95 49.32 24.39 68.60 1.67 50.99 16 19 H -0.28 -14.16 6.84 99.48 0.68 -13.48 16 20 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 21 H -0.27 -13.29 6.87 99.48 0.68 -12.60 16 22 C 0.10 4.37 4.93 86.73 0.43 4.80 16 23 C -0.12 -3.08 9.70 22.27 0.22 -2.87 16 24 C -0.13 -2.88 9.70 22.27 0.22 -2.66 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 29 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 32 H 0.08 1.78 8.06 -2.39 -0.02 1.76 16 33 H 0.05 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 39 H 0.02 0.74 3.52 -2.39 -0.01 0.73 16 40 H 0.02 1.04 8.06 -2.39 -0.02 1.02 16 41 H 0.11 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.88 339.47 3.88 -69.00 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: 0.92 Total: 7.92 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 4.70 Total: -18.10 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -1.92 Total: -95.62 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.50 Total: -14.18 kcal Atomic # 14 Polarization: 49.32 SS G_CDS: 1.67 Total: 50.99 kcal Total: -72.88 3.88 -69.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222841621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.566 kcal (2) G-P(sol) polarization free energy of solvation -72.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds