Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47135 * 2 1 4 4 C 1.38231 * 120.00041 * 90.00465 * 3 2 1 5 5 C 1.38230 * 120.00274 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00057 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00252 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99767 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38237 * 119.99616 * 0.25025 * 6 5 4 23 23 C 1.38235 * 120.00086 * 359.49677 * 22 6 5 24 24 H 1.09005 * 109.46931 * 299.99982 * 1 2 3 25 25 H 1.09003 * 109.47638 * 59.99640 * 1 2 3 26 26 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00018 * 2 1 3 28 28 H 1.08997 * 109.47262 * 120.00159 * 2 1 3 29 29 H 1.08000 * 119.99856 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.00645 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47036 * 329.99976 * 7 6 5 32 32 H 1.08997 * 109.46955 * 209.99734 * 7 6 5 33 33 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 34 34 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 35 35 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 36 36 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 37 37 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 40 40 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 41 41 H 1.08001 * 120.00018 * 179.72890 * 22 6 5 42 42 H 1.08000 * 120.00250 * 180.25526 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4567 5.4480 0.0000 8 8 4.8857 5.4480 -0.0001 9 6 5.4669 6.7535 0.0005 10 6 6.8306 6.8346 -0.6998 11 7 7.2720 7.7359 0.3809 12 6 8.6441 7.4217 0.8009 13 6 9.1479 8.5033 1.7215 14 1 8.5120 9.3402 1.9700 15 6 10.4181 8.4214 2.2514 16 7 11.1899 7.3990 1.9538 17 14 11.0422 9.7618 3.3930 18 1 9.9885 10.7933 3.5678 19 1 11.3803 9.1704 4.7125 20 1 12.2542 10.3874 2.8057 21 6 6.2867 7.0760 1.2576 22 6 2.7185 3.3775 -1.1972 23 6 2.2622 2.0727 -1.1972 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0824 1.5634 2.1324 30 1 2.9038 3.8848 2.1324 31 1 3.0934 5.9618 0.8900 32 1 3.0933 5.9618 -0.8900 33 1 4.7684 7.5381 -0.2904 34 1 6.7891 7.3161 -1.6769 35 1 7.3659 5.8853 -0.7193 36 1 9.2882 7.3624 -0.0765 37 1 8.6541 6.4656 1.3241 38 1 12.0835 7.3411 2.3268 39 1 6.6768 6.1912 1.7606 40 1 5.7841 7.7620 1.9396 41 1 2.8942 3.8881 -2.1325 42 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222844082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = 5.337001 kcal Electronic energy + Delta-G solvation = -20070.019757 eV Core-core repulsion = 17015.777418 eV Total energy + Delta-G solvation = -3054.242339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83212 -39.33074 -36.68529 -34.41547 -32.81641 -31.06097 -30.57300 -28.99438 -26.24624 -25.36617 -24.83163 -23.08772 -22.86851 -21.53028 -20.72845 -19.39743 -16.97188 -16.51078 -16.11009 -16.02191 -15.55538 -14.98322 -14.74453 -14.38497 -14.02265 -13.91265 -13.78881 -13.51891 -13.11582 -13.02638 -12.56498 -12.23342 -12.04338 -11.93626 -11.63655 -11.55144 -11.24249 -11.13313 -10.98771 -10.86614 -10.81273 -10.49408 -10.17901 -9.74530 -9.19672 -9.11631 -9.02550 -8.74481 -8.42449 -7.90125 -6.01868 -4.03165 1.12276 1.29623 3.32071 3.38939 3.43973 3.45732 4.08081 4.44715 4.51238 4.58162 4.80048 4.85744 4.87833 4.94653 5.01928 5.05748 5.21567 5.24812 5.26830 5.32643 5.33452 5.47821 5.50327 5.58928 5.67698 5.82155 5.90946 5.93731 5.95470 6.11121 6.19961 6.27577 6.34145 6.42684 6.45554 6.51145 6.61721 6.86699 7.22001 7.45836 7.66739 7.87497 8.11727 8.46562 9.04430 9.60730 11.09322 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.002648 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.823819 B =10573.149322 C =10824.701787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.090 4.090 7 C 0.101 3.899 8 O -0.368 6.368 9 C 0.050 3.950 10 C -0.003 4.003 11 N -0.464 5.464 12 C 0.161 3.839 13 C -0.504 4.504 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.005 4.005 22 C -0.096 4.096 23 C -0.123 4.123 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.005 0.995 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.123 0.877 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.973 -12.340 -5.011 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.081 4.081 4 C -0.140 4.140 5 C -0.113 4.113 6 C -0.090 4.090 7 C 0.025 3.975 8 O -0.287 6.287 9 C -0.008 4.008 10 C -0.132 4.132 11 N -0.189 5.189 12 C 0.035 3.965 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.539 5.539 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.134 4.134 22 C -0.114 4.114 23 C -0.141 4.141 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.141 0.859 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.650 -11.848 -5.058 25.193 hybrid contribution 0.612 0.006 0.797 1.005 sum -21.038 -11.841 -4.261 24.515 Atomic orbital electron populations 1.21746 0.94745 1.01634 1.02227 1.20552 0.96131 0.92747 1.02903 1.19919 0.98789 0.96119 0.93283 1.21001 1.00575 0.94855 0.97552 1.21087 0.97785 0.94652 0.97750 1.19668 1.00051 0.95806 0.93498 1.21322 0.82569 0.92907 1.00730 1.88049 1.17922 1.28109 1.94572 1.24036 0.93949 0.84261 0.98524 1.24047 0.93611 0.97416 0.98119 1.68952 1.06306 1.40126 1.03478 1.20267 0.83874 0.96169 0.96222 1.21139 0.98928 1.07318 1.26860 0.91796 1.25021 0.96812 0.96080 0.96931 1.69973 1.09094 1.29863 1.45009 0.86407 0.78738 0.81779 0.80316 1.19637 1.21074 1.20992 1.24240 0.94844 0.98274 0.96054 1.21055 0.98084 0.94649 0.97624 1.20987 1.00739 0.94824 0.97508 0.92549 0.92567 0.92448 0.91038 0.91011 0.86084 0.85808 0.92489 0.92611 0.88798 0.90373 0.91295 0.95250 0.97677 0.92959 0.91083 0.90639 0.85925 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.89 37.16 0.37 -0.55 16 2 C -0.09 -0.63 6.06 -27.89 -0.17 -0.80 16 3 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.24 9.70 -39.59 -0.38 -1.63 16 5 C -0.09 -1.08 9.70 -39.58 -0.38 -1.47 16 6 C -0.09 -1.09 5.51 -104.62 -0.58 -1.66 16 7 C 0.10 1.25 5.91 36.00 0.21 1.46 16 8 O -0.37 -5.88 10.37 -35.23 -0.37 -6.24 16 9 C 0.05 0.83 4.65 -26.21 -0.12 0.71 16 10 C 0.00 -0.05 7.52 -7.55 -0.06 -0.11 16 11 N -0.46 -10.52 6.32 -246.14 -1.55 -12.08 16 12 C 0.16 4.36 4.57 -4.98 -0.02 4.33 16 13 C -0.50 -14.73 9.39 -34.44 -0.32 -15.05 16 14 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.00 -0.09 7.55 -7.56 -0.06 -0.15 16 22 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 23 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 32 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.09 1.35 7.88 -51.93 -0.41 0.94 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 36 H 0.03 0.84 8.08 -51.93 -0.42 0.43 16 37 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.49 7.42 -51.93 -0.39 1.11 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 351.29 15.07 5.29 5.29 Total: -1.00 -32.01 351.29 -10.86 -42.87 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.03 Total: -2.48 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -2.92 Total: -17.84 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: -0.82 Total: -38.70 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.37 Total: -6.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.01 -10.86 -42.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222844082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.209 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds