Wall clock time and date at job start Mon Mar 30 2020 02:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47135 * 2 1 4 4 C 1.38231 * 120.00041 * 90.00465 * 3 2 1 5 5 C 1.38230 * 120.00274 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.00057 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00252 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47071 * 89.99767 * 7 6 5 9 9 C 1.42904 * 114.00030 * 180.02562 * 8 7 6 10 10 C 1.53513 * 114.16833 * 210.00050 * 9 8 7 11 11 N 1.47484 * 87.93060 * 220.32420 * 10 9 8 12 12 C 1.46895 * 110.99756 * 138.70311 * 11 10 9 13 13 C 1.50706 * 109.47182 * 170.00145 * 12 11 10 14 14 H 1.08000 * 119.99302 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72677 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.46683 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47426 * 119.99743 * 17 15 13 20 20 H 1.48501 * 109.46833 * 239.99986 * 17 15 13 21 21 C 1.47477 * 87.83167 * 27.01125 * 11 10 9 22 22 C 1.38237 * 119.99616 * 0.25025 * 6 5 4 23 23 C 1.38235 * 120.00086 * 359.49677 * 22 6 5 24 24 H 1.09005 * 109.46931 * 299.99982 * 1 2 3 25 25 H 1.09003 * 109.47638 * 59.99640 * 1 2 3 26 26 H 1.08999 * 109.47255 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00018 * 2 1 3 28 28 H 1.08997 * 109.47262 * 120.00159 * 2 1 3 29 29 H 1.08000 * 119.99856 * 359.97438 * 4 3 2 30 30 H 1.08000 * 120.00645 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47036 * 329.99976 * 7 6 5 32 32 H 1.08997 * 109.46955 * 209.99734 * 7 6 5 33 33 H 1.09003 * 113.37734 * 343.07418 * 9 8 7 34 34 H 1.09005 * 113.47855 * 105.56295 * 10 9 8 35 35 H 1.08997 * 113.47719 * 335.09320 * 10 9 8 36 36 H 1.09001 * 109.47613 * 50.00491 * 12 11 10 37 37 H 1.08998 * 109.47678 * 290.00386 * 12 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 39 39 H 1.09000 * 113.48071 * 87.76093 * 21 11 10 40 40 H 1.09004 * 113.47566 * 218.21901 * 21 11 10 41 41 H 1.08001 * 120.00018 * 179.72890 * 22 6 5 42 42 H 1.08000 * 120.00250 * 180.25526 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1971 5 6 2.7240 3.3755 1.1972 6 6 2.9544 4.0272 0.0000 7 6 3.4567 5.4480 0.0000 8 8 4.8857 5.4480 -0.0001 9 6 5.4669 6.7535 0.0005 10 6 6.8306 6.8346 -0.6998 11 7 7.2720 7.7359 0.3809 12 6 8.6441 7.4217 0.8009 13 6 9.1479 8.5033 1.7215 14 1 8.5120 9.3402 1.9700 15 6 10.4181 8.4214 2.2514 16 7 11.1899 7.3990 1.9538 17 14 11.0422 9.7618 3.3930 18 1 9.9885 10.7933 3.5678 19 1 11.3803 9.1704 4.7125 20 1 12.2542 10.3874 2.8057 21 6 6.2867 7.0760 1.2576 22 6 2.7185 3.3775 -1.1972 23 6 2.2622 2.0727 -1.1972 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0824 1.5634 2.1324 30 1 2.9038 3.8848 2.1324 31 1 3.0934 5.9618 0.8900 32 1 3.0933 5.9618 -0.8900 33 1 4.7684 7.5381 -0.2904 34 1 6.7891 7.3161 -1.6769 35 1 7.3659 5.8853 -0.7193 36 1 9.2882 7.3624 -0.0765 37 1 8.6541 6.4656 1.3241 38 1 12.0835 7.3411 2.3268 39 1 6.6768 6.1912 1.7606 40 1 5.7841 7.7620 1.9396 41 1 2.8942 3.8881 -2.1325 42 1 2.0818 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222844082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:52 Heat of formation + Delta-G solvation = -14.676835 kcal Electronic energy + Delta-G solvation = -20070.887622 eV Core-core repulsion = 17015.777418 eV Total energy + Delta-G solvation = -3055.110204 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.12170 -40.38250 -37.92941 -35.26818 -34.90144 -31.84189 -31.59228 -30.70189 -27.40792 -26.94779 -26.47503 -23.82116 -23.65402 -23.41721 -21.50792 -20.92309 -18.68509 -18.03215 -17.40196 -16.92163 -16.71388 -16.35224 -16.04656 -15.94138 -15.20389 -14.90989 -14.70199 -14.48666 -14.23839 -14.11892 -14.02452 -13.72143 -13.53658 -13.05163 -12.93842 -12.82675 -12.55923 -12.37558 -12.26245 -12.13973 -11.98403 -11.68845 -11.65079 -11.59330 -11.22227 -10.65491 -10.41881 -9.82873 -9.78701 -9.52929 -8.25489 -6.36752 0.30437 0.49773 1.38790 1.39768 1.54179 2.36965 2.50327 3.03971 3.06881 3.39039 3.47076 3.79258 3.87468 3.94134 4.09262 4.12897 4.18752 4.36087 4.45497 4.46846 4.50438 4.53451 4.59076 4.64842 4.70296 4.72657 4.75830 4.85359 4.92040 5.04031 5.05457 5.09633 5.12979 5.21191 5.38879 5.49425 5.53134 5.67855 5.71324 5.72135 6.02825 6.09512 6.27187 6.37421 6.77638 7.32997 8.86352 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036082 B = 0.002648 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.823819 B =10573.149322 C =10824.701787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.084 4.084 4 C -0.131 4.131 5 C -0.111 4.111 6 C -0.112 4.112 7 C 0.097 3.903 8 O -0.386 6.386 9 C 0.084 3.916 10 C -0.008 4.008 11 N -0.478 5.478 12 C 0.176 3.824 13 C -0.527 4.527 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.976 3.024 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.275 1.275 21 C -0.012 4.012 22 C -0.106 4.106 23 C -0.129 4.129 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.136 0.864 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.002 0.998 37 H -0.024 1.024 38 H 0.266 0.734 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.573 -12.098 -5.057 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.149 4.149 5 C -0.129 4.129 6 C -0.113 4.113 7 C 0.022 3.978 8 O -0.305 6.305 9 C 0.025 3.975 10 C -0.137 4.137 11 N -0.202 5.202 12 C 0.049 3.951 13 C -0.565 4.565 14 H 0.080 0.920 15 C -0.200 4.200 16 N -0.576 5.576 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.201 1.201 21 C -0.141 4.141 22 C -0.124 4.124 23 C -0.147 4.147 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.154 0.846 30 H 0.144 0.856 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.020 0.980 37 H -0.006 1.006 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.151 0.849 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.278 -11.613 -5.114 26.512 hybrid contribution 1.035 -0.186 0.776 1.307 sum -22.243 -11.799 -4.338 25.549 Atomic orbital electron populations 1.21726 0.93901 1.02476 1.01978 1.20609 0.96774 0.91266 1.03626 1.20266 0.97870 0.97238 0.93015 1.21259 1.00392 0.94625 0.98650 1.21274 0.98336 0.95400 0.97862 1.19786 1.01273 0.96040 0.94160 1.21549 0.80347 0.93711 1.02238 1.88028 1.20461 1.27590 1.94418 1.23722 0.93346 0.85540 0.94868 1.24114 0.95074 0.96181 0.98350 1.68845 1.04203 1.41501 1.05660 1.19917 0.86307 0.94407 0.94432 1.21450 0.99560 1.07765 1.27721 0.92000 1.26019 0.96883 0.98625 0.98491 1.70099 1.09603 1.31819 1.46067 0.85234 0.78266 0.78549 0.77966 1.18668 1.20167 1.20085 1.24287 0.94850 0.97529 0.97475 1.21286 0.98096 0.95263 0.97771 1.21288 1.00243 0.94628 0.98560 0.92923 0.92703 0.91078 0.90185 0.90462 0.84575 0.85608 0.91451 0.90528 0.85492 0.88175 0.92968 0.98011 1.00635 0.92523 0.93309 0.89433 0.84856 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.89 71.98 0.71 -0.81 16 2 C -0.09 -1.08 6.06 29.85 0.18 -0.90 16 3 C -0.08 -1.50 5.13 -19.87 -0.10 -1.61 16 4 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 5 C -0.11 -2.47 9.70 22.27 0.22 -2.26 16 6 C -0.11 -2.61 5.51 -19.86 -0.11 -2.72 16 7 C 0.10 2.23 5.91 71.24 0.42 2.65 16 8 O -0.39 -11.93 10.37 -148.98 -1.55 -13.48 16 9 C 0.08 2.63 4.65 30.94 0.14 2.77 16 10 C -0.01 -0.30 7.52 83.57 0.63 0.33 16 11 N -0.48 -21.96 6.32 -933.04 -5.89 -27.86 16 12 C 0.18 9.97 4.57 85.56 0.39 10.36 16 13 C -0.53 -31.42 9.39 25.60 0.24 -31.18 16 14 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 16 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 17 Si 0.98 45.46 29.54 68.60 2.03 47.48 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 C -0.01 -0.47 7.55 83.57 0.63 0.16 16 22 C -0.11 -2.21 9.70 22.27 0.22 -1.99 16 23 C -0.13 -2.37 9.70 22.27 0.22 -2.16 16 24 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 28 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 30 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 31 H 0.07 1.39 8.09 -2.39 -0.02 1.37 16 32 H 0.08 1.43 8.08 -2.39 -0.02 1.41 16 33 H 0.13 3.21 7.88 -2.39 -0.02 3.19 16 34 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 35 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 36 H 0.00 0.11 8.08 -2.39 -0.02 0.09 16 37 H -0.02 -1.47 7.30 -2.39 -0.02 -1.49 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 40 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 41 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.91 351.29 0.30 -69.61 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.97 Total: 11.40 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 4.46 Total: -29.38 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -5.61 Total: -85.63 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.55 Total: -13.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -69.91 0.30 -69.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222844082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.930 kcal (2) G-P(sol) polarization free energy of solvation -69.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds