Wall clock time and date at job start Mon Mar 30 2020 02:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 O 1.42896 * 109.47237 * 120.00622 * 2 1 3 5 5 C 1.42908 * 113.99784 * 299.99256 * 4 2 1 6 6 H 1.09005 * 110.63665 * 26.86414 * 5 4 2 7 7 C 1.55156 * 110.71739 * 150.00124 * 5 4 2 8 8 C 1.54906 * 101.61451 * 154.02577 * 7 5 4 9 9 N 1.47471 * 104.81210 * 323.04512 * 8 7 5 10 10 C 1.36936 * 125.62644 * 204.04433 * 9 8 7 11 11 H 1.08001 * 119.99967 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00461 * 0.03195 * 10 9 8 13 13 N 1.31616 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47094 * 89.99760 * 14 12 10 16 16 H 1.48495 * 109.46793 * 209.99676 * 14 12 10 17 17 H 1.48497 * 109.46828 * 329.99405 * 14 12 10 18 18 C 1.47017 * 108.71970 * 24.07007 * 9 8 7 19 19 C 1.50703 * 109.46862 * 240.00301 * 2 1 3 20 20 C 1.38230 * 119.99826 * 239.72530 * 19 2 1 21 21 C 1.38237 * 120.00072 * 179.76374 * 20 19 2 22 22 C 1.38237 * 119.99638 * 0.50981 * 21 20 19 23 23 C 1.38241 * 120.00111 * 359.74559 * 22 21 20 24 24 C 1.38230 * 119.99797 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46793 * 299.99374 * 1 2 3 26 26 H 1.08994 * 109.47521 * 59.99562 * 1 2 3 27 27 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46907 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47249 * 300.00282 * 3 2 1 30 30 H 1.08998 * 109.47046 * 60.00364 * 3 2 1 31 31 H 1.09002 * 111.00677 * 272.12161 * 7 5 4 32 32 H 1.09002 * 111.00564 * 35.93419 * 7 5 4 33 33 H 1.09008 * 110.36753 * 81.85112 * 8 7 5 34 34 H 1.09001 * 110.37094 * 204.16995 * 8 7 5 35 35 H 0.97005 * 119.99622 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.88206 * 239.55467 * 18 9 8 37 37 H 1.09004 * 110.01118 * 118.46560 * 18 9 8 38 38 H 1.08004 * 120.00091 * 359.97438 * 20 19 2 39 39 H 1.07998 * 120.00414 * 180.22830 * 21 20 19 40 40 H 1.07999 * 119.99960 * 179.71900 * 22 21 20 41 41 H 1.07994 * 119.99792 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00128 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 1.5848 -0.0774 2.3950 6 1 0.6435 0.4555 2.2602 7 6 1.4541 -1.1493 3.5091 8 6 1.6759 -0.3008 4.7860 9 7 2.7039 0.6869 4.4084 10 6 3.5479 1.3303 5.2738 11 1 4.2694 2.0400 4.8969 12 6 3.4761 1.0703 6.6355 13 7 2.5965 0.2056 7.0948 14 14 4.6279 1.9475 7.8159 15 1 3.9971 3.2106 8.2761 16 1 4.8970 1.0736 8.9859 17 1 5.9052 2.2554 7.1239 18 6 2.6722 0.8667 2.9496 19 6 2.0323 -0.7104 -1.2305 20 6 2.8317 -1.8310 -1.1038 21 6 3.2884 -2.4855 -2.2325 22 6 2.9544 -2.0131 -3.4880 23 6 2.1593 -0.8894 -3.6147 24 6 1.6979 -0.2383 -2.4860 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 0.4605 -1.5975 3.5055 32 1 2.2252 -1.9132 3.4088 33 1 0.7526 0.2035 5.0715 34 1 2.0338 -0.9290 5.6016 35 1 2.5461 0.0242 8.0464 36 1 3.6411 0.6072 2.5230 37 1 2.4251 1.9001 2.7065 38 1 3.0966 -2.1972 -0.1229 39 1 3.9099 -3.3631 -2.1335 40 1 3.3150 -2.5218 -4.3698 41 1 1.8988 -0.5202 -4.5956 42 1 1.0770 0.6399 -2.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223953568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:27 Heat of formation + Delta-G solvation = 6.713878 kcal Electronic energy + Delta-G solvation = -21633.701021 eV Core-core repulsion = 18579.518388 eV Total energy + Delta-G solvation = -3054.182633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98625 -38.33676 -36.25522 -33.27513 -31.91871 -30.86892 -29.64092 -29.12105 -27.56782 -26.87823 -24.48380 -23.11177 -22.42929 -20.38914 -20.17701 -19.40342 -17.42399 -16.81491 -16.34978 -15.24140 -14.96209 -14.70400 -14.39858 -14.34234 -13.86183 -13.57052 -13.41000 -13.06018 -12.79004 -12.44924 -12.21739 -12.00939 -11.88158 -11.81527 -11.62687 -11.31204 -11.01979 -10.99126 -10.81699 -10.73692 -10.52418 -10.16134 -10.08721 -9.70481 -9.48152 -9.17376 -8.91550 -8.66270 -8.63425 -6.81359 -5.63501 -3.05101 1.32481 1.41292 3.41534 3.46306 3.48544 3.77484 3.83825 4.51718 4.65634 4.89644 4.95888 5.03531 5.13014 5.15014 5.34302 5.43123 5.50379 5.52372 5.57817 5.59679 5.68035 5.74794 5.80784 5.87204 5.92419 6.01595 6.05978 6.18964 6.30506 6.37309 6.44509 6.52927 6.55414 6.62378 6.65044 6.73199 6.82095 6.99503 7.51183 7.64756 7.71399 7.87512 8.37592 9.23690 9.84661 10.49292 11.40566 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.003845 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.478128 B = 7281.040521 C = 7369.327413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.151 3.849 3 C -0.174 4.174 4 O -0.363 6.363 5 C 0.074 3.926 6 H 0.068 0.932 7 C -0.139 4.139 8 C 0.153 3.847 9 N -0.603 5.603 10 C -0.221 4.221 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.923 5.923 14 Si 0.915 3.085 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.121 3.879 19 C -0.066 4.066 20 C -0.094 4.094 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.114 4.114 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.013 0.987 34 H 0.110 0.890 35 H 0.252 0.748 36 H 0.032 0.968 37 H 0.020 0.980 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 -2.780 -19.258 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.111 3.889 3 C -0.231 4.231 4 O -0.282 6.282 5 C 0.016 3.984 6 H 0.086 0.914 7 C -0.178 4.178 8 C 0.028 3.972 9 N -0.330 5.330 10 C -0.349 4.349 11 H 0.095 0.905 12 C -0.207 4.207 13 N -0.572 5.572 14 Si 0.745 3.255 15 H -0.217 1.217 16 H -0.216 1.216 17 H -0.207 1.207 18 C -0.006 4.006 19 C -0.066 4.066 20 C -0.112 4.112 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.132 4.132 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.031 0.969 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.038 0.962 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.624 -2.931 -19.044 19.606 hybrid contribution 0.394 0.772 0.571 1.038 sum -3.231 -2.159 -18.472 18.877 Atomic orbital electron populations 1.22442 0.95145 1.02955 1.02548 1.20084 0.92715 0.91371 0.84701 1.22548 1.02637 0.95336 1.02605 1.87961 1.74485 1.53071 1.12715 1.23255 0.96591 0.95505 0.83045 0.91398 1.23159 1.00610 0.97944 0.96043 1.21954 0.90908 0.90680 0.93658 1.44421 1.40242 1.48359 0.99967 1.19089 1.10888 1.17567 0.87384 0.90507 1.24788 0.99377 0.99827 0.96716 1.69784 1.37397 1.37300 1.12724 0.86063 0.80121 0.78620 0.80658 1.21656 1.21625 1.20687 1.21776 0.96596 0.95518 0.86669 1.19615 0.97860 0.95964 0.93129 1.21155 0.96009 0.94619 0.99382 1.21203 1.00289 1.00093 0.92564 1.21129 0.98964 0.96999 0.97379 1.21030 0.98791 0.96320 0.98154 1.20874 1.00584 1.00070 0.91669 0.91427 0.91671 0.91676 0.91521 0.91993 0.91141 0.92142 0.91250 0.96936 0.87252 0.93726 0.95029 0.96176 0.84747 0.86158 0.86434 0.86268 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.19 37.16 0.30 -1.80 16 2 C 0.15 2.09 0.95 -91.77 -0.09 2.00 16 3 C -0.17 -2.31 7.63 37.16 0.28 -2.02 16 4 O -0.36 -6.17 8.22 -35.23 -0.29 -6.46 16 5 C 0.07 1.36 2.48 -24.90 -0.06 1.30 16 6 H 0.07 1.17 5.55 -51.93 -0.29 0.88 16 7 C -0.14 -2.78 6.81 -24.58 -0.17 -2.95 16 8 C 0.15 3.79 5.89 -2.50 -0.01 3.78 16 9 N -0.60 -15.92 3.40 -170.04 -0.58 -16.50 16 10 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 11 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 12 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 13 N -0.92 -27.16 10.09 55.49 0.56 -26.60 16 14 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.12 2.64 5.95 -3.07 -0.02 2.62 16 19 C -0.07 -0.86 4.78 -104.62 -0.50 -1.36 16 20 C -0.09 -1.26 9.38 -39.58 -0.37 -1.63 16 21 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 22 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 24 C -0.11 -1.27 8.71 -39.58 -0.34 -1.61 16 25 H 0.07 0.84 6.13 -51.93 -0.32 0.52 16 26 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 30 H 0.07 0.99 5.77 -51.93 -0.30 0.69 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.11 3.03 5.88 -51.93 -0.31 2.73 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.02 0.43 6.97 -51.93 -0.36 0.07 16 38 H 0.13 1.96 7.01 -52.48 -0.37 1.59 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 1.11 7.10 -52.48 -0.37 0.74 16 LS Contribution 327.51 15.07 4.94 4.94 Total: -1.00 -30.65 327.51 -9.24 -39.89 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.43 Total: 1.15 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.42 Total: -13.70 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.02 Total: -43.10 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.29 Total: -6.46 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.65 -9.24 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223953568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.608 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds