Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46935 * 2 1 4 4 O 1.42896 * 109.47237 * 120.00622 * 2 1 3 5 5 C 1.42908 * 113.99784 * 299.99256 * 4 2 1 6 6 H 1.09005 * 110.63665 * 26.86414 * 5 4 2 7 7 C 1.55156 * 110.71739 * 150.00124 * 5 4 2 8 8 C 1.54906 * 101.61451 * 154.02577 * 7 5 4 9 9 N 1.47471 * 104.81210 * 323.04512 * 8 7 5 10 10 C 1.36936 * 125.62644 * 204.04433 * 9 8 7 11 11 H 1.08001 * 119.99967 * 180.02562 * 10 9 8 12 12 C 1.38816 * 120.00461 * 0.03195 * 10 9 8 13 13 N 1.31616 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00126 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47094 * 89.99760 * 14 12 10 16 16 H 1.48495 * 109.46793 * 209.99676 * 14 12 10 17 17 H 1.48497 * 109.46828 * 329.99405 * 14 12 10 18 18 C 1.47017 * 108.71970 * 24.07007 * 9 8 7 19 19 C 1.50703 * 109.46862 * 240.00301 * 2 1 3 20 20 C 1.38230 * 119.99826 * 239.72530 * 19 2 1 21 21 C 1.38237 * 120.00072 * 179.76374 * 20 19 2 22 22 C 1.38237 * 119.99638 * 0.50981 * 21 20 19 23 23 C 1.38241 * 120.00111 * 359.74559 * 22 21 20 24 24 C 1.38230 * 119.99797 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.46793 * 299.99374 * 1 2 3 26 26 H 1.08994 * 109.47521 * 59.99562 * 1 2 3 27 27 H 1.08999 * 109.47279 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46907 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47249 * 300.00282 * 3 2 1 30 30 H 1.08998 * 109.47046 * 60.00364 * 3 2 1 31 31 H 1.09002 * 111.00677 * 272.12161 * 7 5 4 32 32 H 1.09002 * 111.00564 * 35.93419 * 7 5 4 33 33 H 1.09008 * 110.36753 * 81.85112 * 8 7 5 34 34 H 1.09001 * 110.37094 * 204.16995 * 8 7 5 35 35 H 0.97005 * 119.99622 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.88206 * 239.55467 * 18 9 8 37 37 H 1.09004 * 110.01118 * 118.46560 * 18 9 8 38 38 H 1.08004 * 120.00091 * 359.97438 * 20 19 2 39 39 H 1.07998 * 120.00414 * 180.22830 * 21 20 19 40 40 H 1.07999 * 119.99960 * 179.71900 * 22 21 20 41 41 H 1.07994 * 119.99792 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00128 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 1.5848 -0.0774 2.3950 6 1 0.6435 0.4555 2.2602 7 6 1.4541 -1.1493 3.5091 8 6 1.6759 -0.3008 4.7860 9 7 2.7039 0.6869 4.4084 10 6 3.5479 1.3303 5.2738 11 1 4.2694 2.0400 4.8969 12 6 3.4761 1.0703 6.6355 13 7 2.5965 0.2056 7.0948 14 14 4.6279 1.9475 7.8159 15 1 3.9971 3.2106 8.2761 16 1 4.8970 1.0736 8.9859 17 1 5.9052 2.2554 7.1239 18 6 2.6722 0.8667 2.9496 19 6 2.0323 -0.7104 -1.2305 20 6 2.8317 -1.8310 -1.1038 21 6 3.2884 -2.4855 -2.2325 22 6 2.9544 -2.0131 -3.4880 23 6 2.1593 -0.8894 -3.6147 24 6 1.6979 -0.2383 -2.4860 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 0.4605 -1.5975 3.5055 32 1 2.2252 -1.9132 3.4088 33 1 0.7526 0.2035 5.0715 34 1 2.0338 -0.9290 5.6016 35 1 2.5461 0.0242 8.0464 36 1 3.6411 0.6072 2.5230 37 1 2.4251 1.9001 2.7065 38 1 3.0966 -2.1972 -0.1229 39 1 3.9099 -3.3631 -2.1335 40 1 3.3150 -2.5218 -4.3698 41 1 1.8988 -0.5202 -4.5956 42 1 1.0770 0.6399 -2.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223953568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = -9.664102 kcal Electronic energy + Delta-G solvation = -21634.411223 eV Core-core repulsion = 18579.518388 eV Total energy + Delta-G solvation = -3054.892835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07597 -39.58467 -37.84511 -34.72838 -33.66121 -31.74983 -31.03970 -30.53854 -29.06701 -28.15469 -26.45008 -24.16531 -23.29617 -22.11673 -21.75088 -20.65918 -19.03187 -18.30022 -17.49342 -16.83396 -16.31313 -16.16274 -15.72490 -15.42954 -15.13413 -15.01277 -14.50384 -14.25686 -14.14622 -13.88767 -13.62470 -13.43874 -13.12759 -12.99875 -12.94397 -12.78408 -12.76400 -12.51697 -12.17748 -12.05467 -12.02096 -11.83443 -11.80446 -11.45179 -11.12591 -10.76987 -10.56608 -9.76674 -9.56189 -8.92190 -7.79419 -5.24647 0.47293 0.55606 1.45844 1.48186 1.57063 2.45283 2.61627 2.91812 3.30992 3.66821 3.69368 3.84828 3.94573 4.04553 4.15585 4.15962 4.20120 4.22656 4.35486 4.51271 4.61590 4.64216 4.66729 4.70897 4.80163 4.84625 4.91908 4.99960 5.04308 5.05065 5.16162 5.22127 5.23640 5.30507 5.43292 5.58411 5.62621 5.68368 5.72592 5.76754 6.15694 6.26958 6.43194 7.08122 7.74521 8.38491 9.22677 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.003845 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.478128 B = 7281.040521 C = 7369.327413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.143 3.857 3 C -0.171 4.171 4 O -0.374 6.374 5 C 0.093 3.907 6 H 0.087 0.913 7 C -0.127 4.127 8 C 0.156 3.844 9 N -0.626 5.626 10 C -0.244 4.244 11 H 0.078 0.922 12 C -0.065 4.065 13 N -0.948 5.948 14 Si 0.983 3.017 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.271 1.271 18 C 0.121 3.879 19 C -0.082 4.082 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.060 0.940 33 H -0.003 1.003 34 H 0.077 0.923 35 H 0.249 0.751 36 H 0.018 0.982 37 H 0.028 0.972 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -2.186 -21.821 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 C -0.228 4.228 4 O -0.294 6.294 5 C 0.035 3.965 6 H 0.105 0.895 7 C -0.166 4.166 8 C 0.031 3.969 9 N -0.353 5.353 10 C -0.372 4.372 11 H 0.096 0.904 12 C -0.257 4.257 13 N -0.598 5.598 14 Si 0.811 3.189 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.196 1.196 18 C -0.005 4.005 19 C -0.082 4.082 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.082 0.918 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.015 0.985 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.046 0.954 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.163 0.837 41 H 0.168 0.832 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.129 -2.337 -21.642 22.156 hybrid contribution 0.575 0.569 1.251 1.489 sum -3.555 -1.768 -20.391 20.774 Atomic orbital electron populations 1.22419 0.93520 1.03087 1.03654 1.20361 0.94018 0.91442 0.83738 1.22517 1.01555 0.95244 1.03460 1.87960 1.74932 1.53434 1.13036 1.22923 0.96022 0.94051 0.83472 0.89507 1.22979 1.01949 0.97387 0.94252 1.21728 0.89666 0.90409 0.95083 1.44732 1.40228 1.48635 1.01689 1.19449 1.11515 1.17956 0.88320 0.90399 1.25658 1.01067 1.00754 0.98267 1.70032 1.38696 1.38367 1.12664 0.85016 0.78416 0.77365 0.78143 1.21074 1.21698 1.19609 1.21903 0.97254 0.96849 0.84494 1.19656 0.98700 0.96233 0.93629 1.21119 0.97761 0.95939 0.99161 1.21405 1.00400 1.00479 0.92669 1.21493 0.98329 0.97042 0.97612 1.21442 0.97654 0.95721 0.99200 1.21124 1.00624 1.00707 0.90960 0.91758 0.89066 0.92030 0.93194 0.89127 0.92213 0.89216 0.92102 0.98525 0.90543 0.94146 0.96387 0.95420 0.87127 0.84964 0.83737 0.83225 0.84107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 8.19 71.98 0.59 -3.13 16 2 C 0.14 3.79 0.95 -11.54 -0.01 3.78 16 3 C -0.17 -4.29 7.63 71.98 0.55 -3.74 16 4 O -0.37 -12.69 8.22 -148.98 -1.22 -13.91 16 5 C 0.09 3.44 2.48 31.78 0.08 3.52 16 6 H 0.09 2.89 5.55 -2.38 -0.01 2.87 16 7 C -0.13 -5.12 6.81 31.98 0.22 -4.90 16 8 C 0.16 7.99 5.89 86.85 0.51 8.50 16 9 N -0.63 -33.94 3.40 -691.89 -2.35 -36.29 16 10 C -0.24 -14.20 10.27 84.03 0.86 -13.34 16 11 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 12 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 13 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 14 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C 0.12 5.36 5.95 86.73 0.52 5.88 16 19 C -0.08 -2.04 4.78 -19.87 -0.09 -2.14 16 20 C -0.12 -3.27 9.38 22.27 0.21 -3.06 16 21 C -0.13 -2.85 10.05 22.27 0.22 -2.62 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 24 C -0.12 -2.23 8.71 22.27 0.19 -2.04 16 25 H 0.06 1.44 6.13 -2.38 -0.01 1.43 16 26 H 0.09 1.50 7.39 -2.39 -0.02 1.49 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.09 1.71 7.39 -2.39 -0.02 1.70 16 30 H 0.06 1.61 5.77 -2.39 -0.01 1.60 16 31 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 34 H 0.08 4.43 5.88 -2.39 -0.01 4.42 16 35 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 36 H 0.02 0.85 8.06 -2.39 -0.02 0.83 16 37 H 0.03 1.19 6.97 -2.38 -0.02 1.18 16 38 H 0.11 3.40 7.01 -2.91 -0.02 3.38 16 39 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 40 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 41 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 42 H 0.14 2.03 7.10 -2.91 -0.02 2.01 16 Total: -1.00 -67.87 327.51 4.42 -63.44 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.99 Total: 15.78 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: 4.76 Total: -20.37 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -2.13 Total: -93.42 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.22 Total: -13.91 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -67.87 4.42 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223953568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.780 kcal (2) G-P(sol) polarization free energy of solvation -67.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds