Wall clock time and date at job start Mon Mar 30 2020 02:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47389 * 2 1 4 4 O 1.42903 * 109.46798 * 120.00285 * 2 1 3 5 5 C 1.42906 * 113.99716 * 299.99558 * 4 2 1 6 6 H 1.08999 * 110.88721 * 333.88094 * 5 4 2 7 7 C 1.55156 * 110.99977 * 210.00406 * 5 4 2 8 8 C 1.54327 * 102.94181 * 206.38447 * 7 5 4 9 9 N 1.47031 * 107.26879 * 22.19441 * 8 7 5 10 10 C 1.36934 * 125.64541 * 181.01107 * 9 8 7 11 11 H 1.08007 * 119.99611 * 180.02562 * 10 9 8 12 12 C 1.38808 * 120.00627 * 0.03037 * 10 9 8 13 13 N 1.31621 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00320 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47113 * 89.99796 * 14 12 10 16 16 H 1.48502 * 109.47095 * 209.99480 * 14 12 10 17 17 H 1.48503 * 109.47330 * 329.99496 * 14 12 10 18 18 C 1.47422 * 108.70136 * 1.05978 * 9 8 7 19 19 C 1.50698 * 109.46686 * 239.99560 * 2 1 3 20 20 C 1.38237 * 120.00123 * 239.72571 * 19 2 1 21 21 C 1.38232 * 120.00063 * 179.81530 * 20 19 2 22 22 C 1.38239 * 119.99788 * 0.41691 * 21 20 19 23 23 C 1.38232 * 120.00089 * 359.81978 * 22 21 20 24 24 C 1.38228 * 120.00149 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47119 * 299.99971 * 1 2 3 26 26 H 1.09001 * 109.47077 * 59.99723 * 1 2 3 27 27 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47102 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46860 * 300.00363 * 3 2 1 30 30 H 1.09002 * 109.46967 * 59.99935 * 3 2 1 31 31 H 1.09001 * 110.72147 * 88.02382 * 7 5 4 32 32 H 1.08997 * 110.72273 * 324.74612 * 7 5 4 33 33 H 1.08998 * 109.88371 * 141.60876 * 8 7 5 34 34 H 1.08994 * 109.88463 * 262.78171 * 8 7 5 35 35 H 0.97008 * 119.99709 * 180.02562 * 13 12 10 36 36 H 1.09000 * 110.36378 * 217.03375 * 18 9 8 37 37 H 1.08998 * 110.37024 * 94.71091 * 18 9 8 38 38 H 1.07998 * 120.00052 * 0.02562 * 20 19 2 39 39 H 1.07996 * 120.00379 * 180.20831 * 21 20 19 40 40 H 1.08004 * 119.99964 * 179.78713 * 22 21 20 41 41 H 1.08006 * 119.99844 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00577 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 1.5846 -0.0773 2.3951 6 1 1.3823 0.9854 2.2618 7 6 2.6344 -0.3075 3.5142 8 6 1.7857 -0.2485 4.8017 9 7 0.3964 -0.5455 4.4227 10 6 -0.6748 -0.5731 5.2752 11 1 -1.6600 -0.8034 4.8972 12 6 -0.4947 -0.3051 6.6252 13 7 0.7059 -0.0249 7.0860 14 14 -1.9562 -0.3421 7.7879 15 1 -2.1180 -1.7128 8.3361 16 1 -1.7267 0.6126 8.9020 17 1 -3.1857 0.0443 7.0502 18 6 0.3481 -0.8098 2.9732 19 6 2.0322 -0.7105 -1.2304 20 6 2.8316 -1.8312 -1.1036 21 6 3.2891 -2.4851 -2.2322 22 6 2.9544 -2.0134 -3.4878 23 6 2.1590 -0.8899 -3.6146 24 6 1.6980 -0.2385 -2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.3833 0.4845 3.5093 32 1 3.1046 -1.2850 3.4067 33 1 2.1422 -0.9914 5.5151 34 1 1.8454 0.7478 5.2397 35 1 0.8319 0.1621 8.0295 36 1 -0.5681 -0.4041 2.5440 37 1 0.4168 -1.8803 2.7802 38 1 3.0959 -2.1977 -0.1227 39 1 3.9109 -3.3626 -2.1332 40 1 3.3147 -2.5223 -4.3696 41 1 1.8979 -0.5212 -4.5956 42 1 1.0770 0.6396 -2.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223953570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:31 Heat of formation + Delta-G solvation = 5.715750 kcal Electronic energy + Delta-G solvation = -21621.685587 eV Core-core repulsion = 18567.459672 eV Total energy + Delta-G solvation = -3054.225915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.98021 -38.32897 -36.27661 -33.27662 -31.91905 -30.87932 -29.64619 -29.10810 -27.55347 -26.89541 -24.46973 -23.12474 -22.43608 -20.46147 -20.03188 -19.50028 -17.44448 -16.80162 -16.36437 -15.24199 -14.83586 -14.68062 -14.44323 -14.35745 -13.83301 -13.55372 -13.41810 -13.08929 -12.71149 -12.43311 -12.36497 -12.04561 -11.92977 -11.83188 -11.64393 -11.37140 -11.02075 -10.95056 -10.84552 -10.67671 -10.39104 -10.17446 -10.08296 -9.70407 -9.64283 -9.14360 -8.92505 -8.67134 -8.57827 -6.81188 -5.69633 -3.03378 1.31722 1.40351 3.41231 3.45865 3.47934 3.76657 3.82199 4.52436 4.65765 4.89273 4.95203 5.04161 5.12247 5.15477 5.40012 5.42993 5.46815 5.52729 5.58091 5.61213 5.70073 5.76572 5.81522 5.87128 5.91702 6.01531 6.04662 6.19509 6.27909 6.33950 6.43680 6.50339 6.54198 6.57311 6.64037 6.74488 6.82034 6.98533 7.57220 7.63884 7.69508 7.84696 8.27397 9.23291 9.83640 10.49644 11.42037 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.003793 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.027852 B = 7379.335466 C = 7531.207962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.152 3.848 3 C -0.174 4.174 4 O -0.365 6.365 5 C 0.070 3.930 6 H 0.072 0.928 7 C -0.139 4.139 8 C 0.179 3.821 9 N -0.605 5.605 10 C -0.227 4.227 11 H 0.078 0.922 12 C -0.009 4.009 13 N -0.922 5.922 14 Si 0.912 3.088 15 H -0.289 1.289 16 H -0.290 1.290 17 H -0.281 1.281 18 C 0.120 3.880 19 C -0.065 4.065 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.114 4.114 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.252 0.748 36 H 0.039 0.961 37 H 0.025 0.975 38 H 0.134 0.866 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.483 0.284 -19.555 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.113 3.887 3 C -0.231 4.231 4 O -0.284 6.284 5 C 0.012 3.988 6 H 0.090 0.910 7 C -0.178 4.178 8 C 0.054 3.946 9 N -0.333 5.333 10 C -0.356 4.356 11 H 0.096 0.904 12 C -0.205 4.205 13 N -0.570 5.570 14 Si 0.743 3.257 15 H -0.216 1.216 16 H -0.217 1.217 17 H -0.207 1.207 18 C -0.006 4.006 19 C -0.065 4.065 20 C -0.112 4.112 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.132 4.132 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.152 0.848 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.559 0.165 -19.332 19.863 hybrid contribution -0.889 0.157 0.682 1.131 sum 3.670 0.322 -18.651 19.011 Atomic orbital electron populations 1.22562 0.94677 1.03227 1.02712 1.20072 0.93116 0.90968 0.84574 1.22446 1.02246 0.95802 1.02644 1.87912 1.73765 1.53913 1.12803 1.23432 0.96167 0.96555 0.82629 0.90988 1.23003 0.97568 1.01221 0.95994 1.21154 0.82388 1.00589 0.90459 1.44378 1.04714 1.82528 1.01644 1.19061 0.87142 1.40881 0.88489 0.90449 1.24805 0.96920 1.01903 0.96858 1.69964 1.19753 1.53805 1.13484 0.86110 0.81512 0.77393 0.80695 1.21592 1.21673 1.20705 1.22025 0.95117 0.97188 0.86291 1.19626 0.97738 0.96020 0.93155 1.21143 0.96116 0.94624 0.99340 1.21197 1.00363 1.00035 0.92574 1.21127 0.98995 0.96990 0.97378 1.21032 0.98746 0.96317 0.98169 1.20881 1.00482 1.00149 0.91667 0.90992 0.91983 0.91546 0.91710 0.91682 0.91316 0.91997 0.91602 0.93668 0.93431 0.93752 0.94248 0.95689 0.84782 0.86182 0.86440 0.86261 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 7.58 37.16 0.28 -2.03 16 2 C 0.15 2.10 0.94 -91.77 -0.09 2.01 16 3 C -0.17 -2.14 8.19 37.15 0.30 -1.84 16 4 O -0.37 -6.08 8.29 -35.23 -0.29 -6.37 16 5 C 0.07 1.30 2.53 -24.58 -0.06 1.24 16 6 H 0.07 1.29 5.55 -51.93 -0.29 1.00 16 7 C -0.14 -2.75 6.69 -24.90 -0.17 -2.91 16 8 C 0.18 4.44 5.37 -3.06 -0.02 4.42 16 9 N -0.60 -15.84 3.39 -170.07 -0.58 -16.42 16 10 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 11 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 12 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 13 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 14 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.12 2.60 6.26 -2.53 -0.02 2.58 16 19 C -0.07 -0.85 4.78 -104.62 -0.50 -1.35 16 20 C -0.09 -1.24 9.38 -39.58 -0.37 -1.61 16 21 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 22 C -0.13 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 24 C -0.11 -1.25 8.71 -39.58 -0.34 -1.60 16 25 H 0.07 1.03 5.72 -51.93 -0.30 0.73 16 26 H 0.06 0.68 7.39 -51.93 -0.38 0.29 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.66 7.39 -51.92 -0.38 0.28 16 30 H 0.07 0.88 6.14 -51.93 -0.32 0.56 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 34 H 0.05 1.28 7.38 -51.93 -0.38 0.90 16 35 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.04 0.82 6.53 -51.93 -0.34 0.48 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.13 1.88 7.01 -52.49 -0.37 1.51 16 39 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.12 1.11 7.10 -52.48 -0.37 0.74 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -30.72 327.94 -9.25 -39.97 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.45 Total: 0.49 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.42 Total: -13.10 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: -0.01 Total: -43.17 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.29 Total: -6.37 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.72 -9.25 -39.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223953570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -30.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds