Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47389 * 2 1 4 4 O 1.42903 * 109.46798 * 120.00285 * 2 1 3 5 5 C 1.42906 * 113.99716 * 299.99558 * 4 2 1 6 6 H 1.08999 * 110.88721 * 333.88094 * 5 4 2 7 7 C 1.55156 * 110.99977 * 210.00406 * 5 4 2 8 8 C 1.54327 * 102.94181 * 206.38447 * 7 5 4 9 9 N 1.47031 * 107.26879 * 22.19441 * 8 7 5 10 10 C 1.36934 * 125.64541 * 181.01107 * 9 8 7 11 11 H 1.08007 * 119.99611 * 180.02562 * 10 9 8 12 12 C 1.38808 * 120.00627 * 0.03037 * 10 9 8 13 13 N 1.31621 * 119.99418 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00320 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47113 * 89.99796 * 14 12 10 16 16 H 1.48502 * 109.47095 * 209.99480 * 14 12 10 17 17 H 1.48503 * 109.47330 * 329.99496 * 14 12 10 18 18 C 1.47422 * 108.70136 * 1.05978 * 9 8 7 19 19 C 1.50698 * 109.46686 * 239.99560 * 2 1 3 20 20 C 1.38237 * 120.00123 * 239.72571 * 19 2 1 21 21 C 1.38232 * 120.00063 * 179.81530 * 20 19 2 22 22 C 1.38239 * 119.99788 * 0.41691 * 21 20 19 23 23 C 1.38232 * 120.00089 * 359.81978 * 22 21 20 24 24 C 1.38228 * 120.00149 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47119 * 299.99971 * 1 2 3 26 26 H 1.09001 * 109.47077 * 59.99723 * 1 2 3 27 27 H 1.09004 * 109.47341 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47102 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.46860 * 300.00363 * 3 2 1 30 30 H 1.09002 * 109.46967 * 59.99935 * 3 2 1 31 31 H 1.09001 * 110.72147 * 88.02382 * 7 5 4 32 32 H 1.08997 * 110.72273 * 324.74612 * 7 5 4 33 33 H 1.08998 * 109.88371 * 141.60876 * 8 7 5 34 34 H 1.08994 * 109.88463 * 262.78171 * 8 7 5 35 35 H 0.97008 * 119.99709 * 180.02562 * 13 12 10 36 36 H 1.09000 * 110.36378 * 217.03375 * 18 9 8 37 37 H 1.08998 * 110.37024 * 94.71091 * 18 9 8 38 38 H 1.07998 * 120.00052 * 0.02562 * 20 19 2 39 39 H 1.07996 * 120.00379 * 180.20831 * 21 20 19 40 40 H 1.08004 * 119.99964 * 179.78713 * 22 21 20 41 41 H 1.08006 * 119.99844 * 179.97438 * 23 22 21 42 42 H 1.08003 * 120.00577 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 1.5846 -0.0773 2.3951 6 1 1.3823 0.9854 2.2618 7 6 2.6344 -0.3075 3.5142 8 6 1.7857 -0.2485 4.8017 9 7 0.3964 -0.5455 4.4227 10 6 -0.6748 -0.5731 5.2752 11 1 -1.6600 -0.8034 4.8972 12 6 -0.4947 -0.3051 6.6252 13 7 0.7059 -0.0249 7.0860 14 14 -1.9562 -0.3421 7.7879 15 1 -2.1180 -1.7128 8.3361 16 1 -1.7267 0.6126 8.9020 17 1 -3.1857 0.0443 7.0502 18 6 0.3481 -0.8098 2.9732 19 6 2.0322 -0.7105 -1.2304 20 6 2.8316 -1.8312 -1.1036 21 6 3.2891 -2.4851 -2.2322 22 6 2.9544 -2.0134 -3.4878 23 6 2.1590 -0.8899 -3.6146 24 6 1.6980 -0.2385 -2.4860 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.3833 0.4845 3.5093 32 1 3.1046 -1.2850 3.4067 33 1 2.1422 -0.9914 5.5151 34 1 1.8454 0.7478 5.2397 35 1 0.8319 0.1621 8.0295 36 1 -0.5681 -0.4041 2.5440 37 1 0.4168 -1.8803 2.7802 38 1 3.0959 -2.1977 -0.1227 39 1 3.9109 -3.3626 -2.1332 40 1 3.3147 -2.5223 -4.3696 41 1 1.8979 -0.5212 -4.5956 42 1 1.0770 0.6396 -2.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223953570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -10.736132 kcal Electronic energy + Delta-G solvation = -21622.398994 eV Core-core repulsion = 18567.459672 eV Total energy + Delta-G solvation = -3054.939322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.05896 -39.57670 -37.85918 -34.72464 -33.66357 -31.74081 -31.03992 -30.52330 -29.06940 -28.16869 -26.43875 -24.17466 -23.28375 -22.06641 -21.77332 -20.70956 -19.01164 -18.31546 -17.47755 -16.76686 -16.31327 -16.04310 -15.71979 -15.54112 -15.14850 -14.92517 -14.44174 -14.25145 -14.14977 -14.05884 -13.71259 -13.48716 -13.05053 -13.00395 -12.94069 -12.80524 -12.74219 -12.50265 -12.11588 -12.03711 -12.00816 -11.81377 -11.80437 -11.54032 -11.15262 -10.73192 -10.53982 -9.75700 -9.55555 -8.93200 -7.86509 -5.23510 0.48101 0.56634 1.45625 1.48093 1.56783 2.43551 2.61121 2.92714 3.32132 3.66368 3.73489 3.83804 3.95214 4.03243 4.15508 4.16881 4.21030 4.23530 4.36341 4.48453 4.62412 4.63272 4.67443 4.70261 4.79496 4.85961 4.92367 4.97451 5.04271 5.06400 5.16765 5.23546 5.25378 5.30472 5.42155 5.60964 5.63416 5.68563 5.71464 5.73753 6.15096 6.16797 6.42424 7.07386 7.73528 8.38519 9.23939 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.003793 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.027852 B = 7379.335466 C = 7531.207962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.145 3.855 3 C -0.171 4.171 4 O -0.372 6.372 5 C 0.092 3.908 6 H 0.083 0.917 7 C -0.128 4.128 8 C 0.188 3.812 9 N -0.626 5.626 10 C -0.246 4.246 11 H 0.082 0.918 12 C -0.065 4.065 13 N -0.951 5.951 14 Si 0.982 3.018 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.267 1.267 18 C 0.119 3.881 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.131 4.131 22 C -0.127 4.127 23 C -0.123 4.123 24 C -0.117 4.117 25 H 0.058 0.942 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.009 0.991 34 H 0.020 0.980 35 H 0.248 0.752 36 H 0.048 0.952 37 H 0.015 0.985 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 0.861 -22.276 22.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.106 3.894 3 C -0.228 4.228 4 O -0.291 6.291 5 C 0.034 3.966 6 H 0.100 0.900 7 C -0.166 4.166 8 C 0.063 3.937 9 N -0.354 5.354 10 C -0.375 4.375 11 H 0.100 0.900 12 C -0.258 4.258 13 N -0.600 5.600 14 Si 0.809 3.191 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.192 1.192 18 C -0.006 4.006 19 C -0.082 4.082 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.027 0.973 34 H 0.038 0.962 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.033 0.967 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.027 0.734 -22.095 22.471 hybrid contribution -0.710 -0.081 1.404 1.575 sum 3.318 0.652 -20.691 20.965 Atomic orbital electron populations 1.22528 0.94355 1.02580 1.03368 1.20332 0.93448 0.91848 0.83734 1.22423 1.02049 0.94768 1.03522 1.87914 1.73757 1.54492 1.12952 1.23034 0.93799 0.96588 0.83220 0.89957 1.22841 0.97521 1.02400 0.93869 1.20892 0.82918 0.97695 0.92234 1.44683 1.04752 1.82434 1.03483 1.19468 0.88084 1.40630 0.89336 0.89972 1.25691 0.99713 1.01927 0.98456 1.70185 1.21737 1.54666 1.13391 0.85035 0.78651 0.77116 0.78251 1.21354 1.21820 1.19181 1.22149 0.97270 0.96973 0.84245 1.19643 0.98664 0.96380 0.93507 1.21128 0.97725 0.95752 0.99260 1.21408 1.00437 1.00418 0.92619 1.21494 0.98330 0.96982 0.97688 1.21432 0.97692 0.95787 0.99153 1.21118 1.00536 1.00788 0.91037 0.92340 0.89249 0.92828 0.92012 0.89153 0.92028 0.89541 0.91290 0.97311 0.96195 0.94261 0.93351 0.96712 0.86840 0.84851 0.83767 0.83333 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.28 7.58 71.98 0.55 -3.74 16 2 C 0.15 3.81 0.94 -11.54 -0.01 3.80 16 3 C -0.17 -3.84 8.19 71.98 0.59 -3.25 16 4 O -0.37 -12.27 8.29 -148.98 -1.23 -13.50 16 5 C 0.09 3.38 2.53 31.99 0.08 3.46 16 6 H 0.08 2.88 5.55 -2.39 -0.01 2.87 16 7 C -0.13 -5.08 6.69 31.78 0.21 -4.87 16 8 C 0.19 9.67 5.37 86.73 0.47 10.14 16 9 N -0.63 -33.64 3.39 -691.98 -2.35 -35.99 16 10 C -0.25 -14.22 10.28 84.03 0.86 -13.36 16 11 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 12 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 13 N -0.95 -58.13 10.31 21.65 0.22 -57.91 16 14 Si 0.98 46.33 29.55 68.60 2.03 48.35 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C 0.12 5.22 6.26 86.86 0.54 5.76 16 19 C -0.08 -1.99 4.78 -19.86 -0.09 -2.09 16 20 C -0.12 -3.11 9.38 22.27 0.21 -2.90 16 21 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 22 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 23 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 24 C -0.12 -2.22 8.71 22.27 0.19 -2.03 16 25 H 0.06 1.61 5.72 -2.39 -0.01 1.60 16 26 H 0.09 1.71 7.39 -2.39 -0.02 1.69 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.55 7.39 -2.38 -0.02 1.54 16 30 H 0.06 1.47 6.14 -2.39 -0.01 1.45 16 31 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.01 0.50 7.50 -2.39 -0.02 0.48 16 34 H 0.02 1.12 7.38 -2.39 -0.02 1.10 16 35 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 36 H 0.05 2.01 6.53 -2.39 -0.02 2.00 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.11 3.29 7.01 -2.91 -0.02 3.27 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 40 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.14 2.03 7.10 -2.91 -0.02 2.01 16 Total: -1.00 -67.91 327.94 4.39 -63.52 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.99 Total: 14.09 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.73 Total: -18.56 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.13 Total: -93.90 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.23 Total: -13.50 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.35 kcal Total: -67.91 4.39 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223953570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.783 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds