Wall clock time and date at job start Mon Mar 30 2020 02:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46789 * 2 1 4 4 O 1.42899 * 109.47153 * 119.99861 * 2 1 3 5 5 C 1.42895 * 114.00481 * 300.00104 * 4 2 1 6 6 C 1.53514 * 114.17121 * 210.00069 * 5 4 2 7 7 N 1.47483 * 87.92777 * 220.32774 * 6 5 4 8 8 C 1.46903 * 110.99717 * 138.70421 * 7 6 5 9 9 C 1.50694 * 109.47066 * 169.99804 * 8 7 6 10 10 H 1.08000 * 120.00563 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.47480 * 87.83900 * 27.00973 * 7 6 5 18 18 C 1.50701 * 109.47007 * 240.00567 * 2 1 3 19 19 C 1.38238 * 119.99535 * 239.72856 * 18 2 1 20 20 C 1.38236 * 119.99650 * 179.76949 * 19 18 2 21 21 C 1.38237 * 119.99842 * 0.49463 * 20 19 18 22 22 C 1.38232 * 120.00080 * 359.75482 * 21 20 19 23 23 C 1.38232 * 120.00367 * 359.97438 * 22 21 20 24 24 H 1.08998 * 109.46665 * 299.99948 * 1 2 3 25 25 H 1.08998 * 109.47268 * 59.99629 * 1 2 3 26 26 H 1.08995 * 109.46896 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47034 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47518 * 300.00217 * 3 2 1 29 29 H 1.09008 * 109.46950 * 60.00535 * 3 2 1 30 30 H 1.09002 * 113.38161 * 343.08499 * 5 4 2 31 31 H 1.09000 * 113.47331 * 105.56452 * 6 5 4 32 32 H 1.08997 * 113.47627 * 335.09577 * 6 5 4 33 33 H 1.09007 * 109.47052 * 49.99488 * 8 7 6 34 34 H 1.09003 * 109.46808 * 290.00181 * 8 7 6 35 35 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 36 36 H 1.09004 * 113.47132 * 87.75237 * 17 7 6 37 37 H 1.09000 * 113.47538 * 218.21976 * 17 7 6 38 38 H 1.07996 * 119.99981 * 359.97438 * 19 18 2 39 39 H 1.08003 * 119.99877 * 180.22802 * 20 19 18 40 40 H 1.08002 * 119.99828 * 179.72844 * 21 20 19 41 41 H 1.08000 * 119.99832 * 179.97438 * 22 21 20 42 42 H 1.07996 * 120.00493 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 1.5848 -0.0774 2.3951 6 6 2.5731 -0.2620 3.5552 7 7 1.4130 -0.4927 4.4361 8 6 1.6754 -1.5916 5.3751 9 6 0.5820 -1.6389 6.4111 10 1 -0.2268 -0.9240 6.3758 11 6 0.6146 -2.5944 7.4047 12 7 1.5997 -3.4647 7.4480 13 14 -0.7404 -2.6526 8.6892 14 1 -0.4752 -3.7635 9.6384 15 1 -0.7761 -1.3660 9.4298 16 1 -2.0474 -2.8751 8.0202 17 6 0.6793 -0.9742 3.2508 18 6 2.0324 -0.7103 -1.2305 19 6 2.8317 -1.8310 -1.1037 20 6 3.2886 -2.4853 -2.2325 21 6 2.9545 -2.0130 -3.4880 22 6 2.1594 -0.8894 -3.6147 23 6 1.6979 -0.2382 -2.4860 24 1 -0.3632 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9564 0.8901 30 1 1.2198 0.9430 2.2777 31 1 3.1303 0.6425 3.7990 32 1 3.2146 -1.1362 3.4441 33 1 2.6347 -1.4284 5.8665 34 1 1.7018 -2.5358 4.8312 35 1 1.6228 -4.1366 8.1472 36 1 0.8156 -2.0385 3.0586 37 1 -0.3682 -0.6733 3.2368 38 1 3.0966 -2.1972 -0.1229 39 1 3.9101 -3.3631 -2.1334 40 1 3.3151 -2.5217 -4.3698 41 1 1.8988 -0.5202 -4.5956 42 1 1.0771 0.6399 -2.5850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223954238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:51 Heat of formation + Delta-G solvation = -3.635006 kcal Electronic energy + Delta-G solvation = -21136.234930 eV Core-core repulsion = 18081.603536 eV Total energy + Delta-G solvation = -3054.631394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44768 -40.32576 -38.32258 -35.11422 -34.08079 -31.78668 -30.97518 -30.52680 -28.31906 -27.23697 -26.72485 -24.54032 -23.32690 -23.13292 -21.07253 -20.69760 -18.59692 -18.34924 -17.58149 -16.94357 -16.34423 -16.14234 -16.03106 -15.73597 -15.15035 -15.08286 -14.69471 -14.32984 -14.27375 -13.87793 -13.74257 -13.67002 -13.35201 -13.13311 -12.91173 -12.87494 -12.76088 -12.56726 -12.41699 -12.17869 -11.97991 -11.87483 -11.60924 -11.37540 -11.16085 -10.64226 -10.48340 -9.78524 -9.76905 -9.57444 -8.25143 -6.36481 0.45670 0.53695 1.38608 1.42806 1.50973 2.36834 2.52884 2.90044 3.06820 3.38007 3.47822 3.67316 3.91550 3.95927 4.12070 4.17916 4.20727 4.25743 4.34570 4.50019 4.59268 4.63237 4.64606 4.68587 4.69881 4.80191 4.85307 4.87289 4.91649 4.94617 5.04075 5.14237 5.20131 5.23434 5.32143 5.53125 5.60942 5.66791 5.68964 5.72347 6.03281 6.13935 6.36798 6.39256 6.77327 7.33151 8.86322 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.003425 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.617308 B = 8173.721289 C = 8474.289841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.144 3.856 3 C -0.170 4.170 4 O -0.376 6.376 5 C 0.087 3.913 6 C -0.008 4.008 7 N -0.477 5.477 8 C 0.177 3.823 9 C -0.529 4.529 10 H 0.062 0.938 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.975 3.025 14 H -0.280 1.280 15 H -0.266 1.266 16 H -0.267 1.267 17 C -0.009 4.009 18 C -0.084 4.084 19 C -0.124 4.124 20 C -0.133 4.133 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.115 4.115 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.001 0.999 34 H -0.025 1.025 35 H 0.266 0.734 36 H 0.047 0.953 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 8.481 -23.667 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.105 3.895 3 C -0.227 4.227 4 O -0.294 6.294 5 C 0.029 3.971 6 C -0.138 4.138 7 N -0.200 5.200 8 C 0.050 3.950 9 C -0.567 4.567 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.798 3.202 14 H -0.206 1.206 15 H -0.191 1.191 16 H -0.192 1.192 17 C -0.138 4.138 18 C -0.084 4.084 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.132 4.132 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.115 0.885 32 H 0.071 0.929 33 H 0.019 0.981 34 H -0.007 1.007 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.127 0.873 39 H 0.147 0.853 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.051 8.688 -23.136 24.713 hybrid contribution 0.027 -1.323 0.855 1.576 sum -0.024 7.365 -22.281 23.466 Atomic orbital electron populations 1.22452 0.93727 1.02615 1.03872 1.20404 0.93819 0.91997 0.83307 1.22440 1.01942 0.94291 1.04016 1.87998 1.73870 1.54263 1.13297 1.23613 0.94277 0.97346 0.81910 1.24112 0.95397 1.01884 0.92374 1.68839 1.09946 1.34138 1.07115 1.19902 0.96091 0.87190 0.91782 1.21393 1.09030 1.14905 1.11371 0.92006 1.26005 0.98796 0.94785 1.00272 1.70086 1.33593 1.18812 1.35085 0.85357 0.78757 0.78015 0.78024 1.20562 1.19069 1.19156 1.24278 1.00218 0.98310 0.91000 1.19706 0.98538 0.96230 0.93919 1.21110 0.98027 0.96050 0.98999 1.21399 1.00524 1.00405 0.92812 1.21486 0.98419 0.97106 0.97522 1.21455 0.97553 0.95656 0.99346 1.21136 1.00446 1.00796 0.90852 0.91470 0.89076 0.93153 0.92398 0.89070 0.91116 0.85761 0.88455 0.92947 0.98072 1.00684 0.92520 0.93495 0.89727 0.87341 0.85254 0.83872 0.83187 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 8.20 71.98 0.59 -2.89 16 2 C 0.14 3.31 0.94 -11.54 -0.01 3.30 16 3 C -0.17 -3.13 8.19 71.98 0.59 -2.54 16 4 O -0.38 -11.46 8.52 -148.98 -1.27 -12.73 16 5 C 0.09 2.74 3.16 30.94 0.10 2.84 16 6 C -0.01 -0.32 7.52 83.58 0.63 0.31 16 7 N -0.48 -21.83 6.32 -932.85 -5.89 -27.73 16 8 C 0.18 10.01 4.57 85.55 0.39 10.40 16 9 C -0.53 -31.52 9.39 25.60 0.24 -31.28 16 10 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 11 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 12 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 13 Si 0.97 45.40 29.54 68.60 2.03 47.43 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C -0.01 -0.34 7.55 83.58 0.63 0.29 16 18 C -0.08 -1.93 4.78 -19.86 -0.09 -2.02 16 19 C -0.12 -3.21 9.38 22.27 0.21 -3.00 16 20 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 21 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 22 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.11 -1.99 8.71 22.27 0.19 -1.80 16 24 H 0.07 1.37 6.98 -2.39 -0.02 1.35 16 25 H 0.09 1.36 7.39 -2.39 -0.02 1.34 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.22 7.39 -2.39 -0.02 1.20 16 29 H 0.07 1.25 6.28 -2.38 -0.01 1.23 16 30 H 0.13 3.28 5.56 -2.39 -0.01 3.26 16 31 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 32 H 0.05 2.14 7.91 -2.39 -0.02 2.12 16 33 H 0.00 0.07 8.08 -2.38 -0.02 0.05 16 34 H -0.02 -1.50 7.30 -2.39 -0.02 -1.51 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.05 2.07 7.42 -2.39 -0.02 2.05 16 37 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.11 3.25 7.01 -2.91 -0.02 3.23 16 39 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.14 1.74 7.10 -2.91 -0.02 1.72 16 Total: -1.00 -69.75 338.25 0.74 -69.02 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.98 Total: 14.00 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 4.60 Total: -32.17 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -5.61 Total: -85.54 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.27 Total: -12.73 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -69.75 0.74 -69.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223954238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.380 kcal (2) G-P(sol) polarization free energy of solvation -69.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds