Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50703 * 109.47558 * 2 1 4 4 C 1.38258 * 119.99703 * 265.02329 * 3 2 1 5 5 C 1.38219 * 119.99583 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.00291 * 359.95986 * 5 4 3 7 7 C 1.38219 * 120.00061 * 359.78875 * 6 5 4 8 8 C 1.38207 * 120.00275 * 84.99398 * 3 2 1 9 9 C 1.50707 * 119.99675 * 0.02562 * 8 3 2 10 10 O 1.42899 * 109.46768 * 179.97438 * 9 8 3 11 11 C 1.42900 * 113.99779 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.88964 * 32.42357 * 11 10 9 13 13 C 1.55157 * 111.03819 * 156.33264 * 11 10 9 14 14 C 1.54334 * 103.02095 * 153.39191 * 13 11 10 15 15 N 1.47014 * 107.26782 * 338.14225 * 14 13 11 16 16 C 1.36945 * 125.64902 * 178.84833 * 15 14 13 17 17 H 1.07997 * 119.99756 * 179.68982 * 16 15 14 18 18 C 1.38805 * 119.99878 * 359.68887 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47428 * 108.70537 * 358.58102 * 15 14 13 25 25 H 1.09001 * 109.47213 * 300.00325 * 1 2 3 26 26 H 1.09002 * 109.47424 * 60.00030 * 1 2 3 27 27 H 1.08999 * 109.47749 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47213 * 239.99675 * 2 1 3 29 29 H 1.09002 * 109.47424 * 119.99970 * 2 1 3 30 30 H 1.07994 * 120.00362 * 359.97438 * 4 3 2 31 31 H 1.08005 * 119.99449 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.00366 * 180.02562 * 6 5 4 33 33 H 1.07998 * 120.00208 * 180.24876 * 7 6 5 34 34 H 1.08996 * 109.47100 * 59.99670 * 9 8 3 35 35 H 1.08996 * 109.46936 * 299.99181 * 9 8 3 36 36 H 1.08998 * 110.71770 * 271.95360 * 13 11 10 37 37 H 1.09002 * 110.71853 * 35.04793 * 13 11 10 38 38 H 1.08998 * 109.99457 * 218.65928 * 14 13 11 39 39 H 1.09007 * 109.77698 * 97.49747 * 14 13 11 40 40 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 41 41 H 1.09003 * 110.36579 * 143.19056 * 24 15 14 42 42 H 1.08999 * 110.36944 * 265.52330 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3607 2.0378 -1.1929 5 6 2.8211 3.3411 -1.1929 6 6 2.9523 4.0279 -0.0003 7 6 2.6191 3.4128 1.1918 8 6 2.1643 2.1072 1.1923 9 6 1.8062 1.4345 2.4925 10 8 2.0270 2.3415 3.5745 11 6 1.7159 1.7996 4.8597 12 1 1.9155 0.7284 4.8885 13 6 2.4934 2.5405 5.9796 14 6 1.5877 2.3520 7.2149 15 7 0.2323 2.0657 6.7226 16 6 -0.8638 1.8134 7.5038 17 1 -1.8213 1.6183 7.0439 18 6 -0.7442 1.8084 8.8867 19 7 0.4226 2.0467 9.4472 20 14 -2.2396 1.4650 9.9523 21 1 -1.8493 1.5162 11.3841 22 1 -3.2826 2.4879 9.6861 23 1 -2.7754 0.1172 9.6337 24 6 0.2471 2.1015 5.2489 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2576 1.5016 -2.1246 31 1 3.0780 3.8230 -2.1247 32 1 3.3116 5.0464 -0.0003 33 1 2.7178 3.9507 2.1231 34 1 2.4287 0.5500 2.6275 35 1 0.7568 1.1407 2.4726 36 1 3.4690 2.0817 6.1401 37 1 2.6011 3.5983 5.7393 38 1 1.5799 3.2627 7.8138 39 1 1.9492 1.5156 7.8131 40 1 0.5061 2.0436 10.4136 41 1 -0.4171 1.3378 4.8441 42 1 -0.0451 3.0885 4.8904 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224217980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = -5.840277 kcal Electronic energy + Delta-G solvation = -21023.229484 eV Core-core repulsion = 17968.502462 eV Total energy + Delta-G solvation = -3054.727022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78748 -38.16683 -35.89079 -34.34883 -32.39458 -31.34952 -29.53567 -29.13782 -27.16198 -26.02537 -24.25509 -23.91507 -21.76875 -20.67925 -20.19521 -19.98429 -17.01818 -16.77477 -16.41406 -15.35962 -15.29583 -14.90604 -14.57965 -14.22422 -13.90045 -13.72596 -13.57450 -13.20340 -13.14786 -12.44181 -12.28685 -12.21441 -11.89113 -11.86255 -11.62491 -11.34466 -11.01050 -10.90191 -10.86380 -10.77295 -10.58253 -10.19819 -10.11542 -9.78257 -9.70965 -9.20357 -8.78580 -8.59333 -8.54547 -6.83181 -5.70512 -3.04645 1.29411 1.39535 3.41396 3.45266 3.46780 3.72371 3.84701 4.51676 4.64837 4.72744 4.92362 5.05080 5.06427 5.19506 5.31843 5.38399 5.42235 5.45587 5.49647 5.54036 5.60943 5.64445 5.76555 5.77605 5.83257 5.89775 5.95693 6.08028 6.12753 6.26016 6.43944 6.47058 6.51948 6.54285 6.62440 6.70328 6.77177 6.99424 7.55674 7.62194 7.62753 7.82968 8.26209 9.22182 9.82300 10.48057 11.41122 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.003592 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.899353 B = 7792.874012 C = 8362.255496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.080 4.080 9 C 0.102 3.898 10 O -0.376 6.376 11 C 0.073 3.927 12 H 0.066 0.934 13 C -0.137 4.137 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.118 3.882 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -1.430 -20.166 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.080 4.080 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.109 4.109 8 C -0.080 4.080 9 C 0.025 3.975 10 O -0.295 6.295 11 C 0.015 3.985 12 H 0.084 0.916 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.398 -1.262 -19.949 20.705 hybrid contribution -0.842 -0.345 0.603 1.092 sum 4.556 -1.607 -19.346 19.940 Atomic orbital electron populations 1.21755 0.94540 1.01860 1.02461 1.20569 0.96422 0.92676 1.02878 1.19624 0.99725 0.96258 0.92437 1.20909 1.00682 0.95278 0.97062 1.21103 1.00250 0.94843 0.97976 1.21175 1.00825 0.99978 0.92595 1.21102 0.96877 0.94355 0.98612 1.19632 1.00050 0.94946 0.93386 1.21225 0.99809 0.91735 0.84706 1.87830 1.87550 1.39721 1.14386 1.23422 0.96717 0.96858 0.81548 0.91562 1.22974 0.98691 1.00128 0.95720 1.21169 0.82451 1.00520 0.90450 1.44351 1.06478 1.83473 0.98886 1.19021 0.87651 1.41294 0.87803 0.90465 1.24810 0.97165 1.01972 0.96469 1.69949 1.21989 1.55520 1.09562 0.86177 0.81775 0.78108 0.79567 1.21560 1.21139 1.21162 1.21931 0.93795 0.98337 0.86787 0.92195 0.92577 0.92263 0.91090 0.90868 0.86292 0.86399 0.86200 0.84732 0.92301 0.91888 0.91844 0.91518 0.93604 0.93315 0.93660 0.94545 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.88 37.15 0.37 -0.99 16 2 C -0.09 -0.83 5.57 -27.89 -0.16 -0.98 16 3 C -0.08 -0.91 5.13 -104.62 -0.54 -1.45 16 4 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 7 C -0.09 -1.22 9.38 -39.58 -0.37 -1.59 16 8 C -0.08 -1.06 5.88 -104.62 -0.62 -1.67 16 9 C 0.10 1.42 4.99 36.01 0.18 1.60 16 10 O -0.38 -6.33 8.64 -35.23 -0.30 -6.63 16 11 C 0.07 1.36 3.49 -24.58 -0.09 1.27 16 12 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 13 C -0.14 -2.69 6.69 -24.89 -0.17 -2.86 16 14 C 0.18 4.44 5.38 -3.06 -0.02 4.42 16 15 N -0.60 -15.89 3.39 -170.06 -0.58 -16.47 16 16 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.12 2.57 6.97 -2.52 -0.02 2.55 16 25 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 29 H 0.07 0.68 6.84 -51.93 -0.36 0.33 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.89 7.01 -52.49 -0.37 1.52 16 34 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 35 H 0.06 0.86 6.76 -51.93 -0.35 0.51 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 39 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -30.81 336.98 -9.87 -40.68 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.77 Total: -1.30 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.85 Total: -11.83 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.00 Total: -43.22 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.30 Total: -6.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.81 -9.87 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224217980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.835 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds