Wall clock time and date at job start Mon Mar 30 2020 02:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47163 * 2 1 4 4 C 1.38252 * 120.00285 * 265.00376 * 3 2 1 5 5 C 1.38215 * 120.00294 * 179.97438 * 4 3 2 6 6 C 1.38256 * 119.99734 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.00084 * 0.09586 * 6 5 4 8 8 C 1.38212 * 119.99840 * 85.02568 * 3 2 1 9 9 C 1.50703 * 120.00225 * 359.97438 * 8 3 2 10 10 O 1.42900 * 109.47403 * 179.97438 * 9 8 3 11 11 C 1.42898 * 113.99615 * 180.02562 * 10 9 8 12 12 H 1.08997 * 110.88843 * 327.57019 * 11 10 9 13 13 C 1.55165 * 111.00111 * 203.65218 * 11 10 9 14 14 C 1.54322 * 102.94144 * 206.42544 * 13 11 10 15 15 N 1.47021 * 107.27354 * 22.19150 * 14 13 11 16 16 C 1.36942 * 125.65108 * 181.02360 * 15 14 13 17 17 H 1.08002 * 119.99863 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99628 * 0.03910 * 16 15 14 19 19 N 1.31618 * 119.99936 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99547 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47106 * 60.00655 * 20 18 16 22 22 H 1.48508 * 109.46785 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47360 * 299.99959 * 20 18 16 24 24 C 1.47432 * 108.70359 * 1.06083 * 15 14 13 25 25 H 1.09003 * 109.46695 * 299.99556 * 1 2 3 26 26 H 1.08999 * 109.47549 * 59.99207 * 1 2 3 27 27 H 1.09001 * 109.47368 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46695 * 240.00444 * 2 1 3 29 29 H 1.08993 * 109.47129 * 120.00658 * 2 1 3 30 30 H 1.08000 * 120.00419 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.00164 * 179.72593 * 5 4 3 32 32 H 1.08001 * 120.00211 * 180.02562 * 6 5 4 33 33 H 1.07997 * 119.99848 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47342 * 300.00263 * 9 8 3 35 35 H 1.09009 * 109.46853 * 59.99935 * 9 8 3 36 36 H 1.09001 * 110.71490 * 324.78811 * 13 11 10 37 37 H 1.08997 * 110.71748 * 88.05988 * 13 11 10 38 38 H 1.08997 * 109.87970 * 262.77380 * 14 13 11 39 39 H 1.09003 * 109.88022 * 141.60695 * 14 13 11 40 40 H 0.97006 * 119.99369 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36852 * 217.03548 * 24 15 14 42 42 H 1.09003 * 110.36870 * 94.70899 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3611 2.0378 -1.1927 5 6 2.8213 3.3411 -1.1928 6 6 2.9524 4.0279 0.0000 7 6 2.6251 3.4105 1.1925 8 6 2.1649 2.1069 1.1925 9 6 1.8064 1.4344 2.4926 10 8 2.0279 2.3410 3.5748 11 6 1.7176 1.7987 4.8600 12 1 0.8915 1.0907 4.7939 13 6 1.4044 2.9266 5.8786 14 6 1.7730 2.2824 7.2316 15 7 2.7137 1.1877 6.9521 16 6 3.2662 0.3521 7.8858 17 1 3.9502 -0.4249 7.5777 18 6 2.9467 0.5035 9.2281 19 7 2.1125 1.4499 9.6033 20 14 3.6997 -0.6368 10.5017 21 1 5.1788 -0.5084 10.4683 22 1 3.2009 -0.2696 11.8514 23 1 3.3176 -2.0393 10.1980 24 6 2.9646 1.1391 5.5001 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.2576 1.5018 -2.1246 31 1 3.0823 3.8216 -2.1241 32 1 3.3117 5.0464 0.0000 33 1 2.7280 3.9469 2.1242 34 1 0.7568 1.1411 2.4728 35 1 2.4284 0.5494 2.6275 36 1 2.0242 3.8024 5.6867 37 1 0.3465 3.1879 5.8513 38 1 0.8770 1.8880 7.7107 39 1 2.2463 3.0220 7.8775 40 1 1.8891 1.5554 10.5414 41 1 3.0607 0.1060 5.1661 42 1 3.8627 1.7043 5.2511 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224217981.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:12 Heat of formation + Delta-G solvation = -5.815897 kcal Electronic energy + Delta-G solvation = -20994.983699 eV Core-core repulsion = 17940.257734 eV Total energy + Delta-G solvation = -3054.725965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.78849 -38.16853 -35.89102 -34.35723 -32.39521 -31.35061 -29.54730 -29.13688 -27.16475 -26.02394 -24.25204 -23.92733 -21.77264 -20.69052 -20.17707 -19.99078 -17.02682 -16.75528 -16.42590 -15.51795 -15.03951 -14.96815 -14.58507 -14.31343 -13.83826 -13.73264 -13.62051 -13.28500 -13.02326 -12.55371 -12.29151 -12.11068 -11.95005 -11.85914 -11.59835 -11.36431 -11.05489 -10.94139 -10.82810 -10.74550 -10.59160 -10.19987 -10.11615 -9.78029 -9.70914 -9.20302 -8.78624 -8.59325 -8.54679 -6.83148 -5.70509 -3.04556 1.29352 1.39529 3.41457 3.45301 3.46808 3.72346 3.84762 4.51751 4.64110 4.72520 4.92087 5.04516 5.05862 5.18167 5.31700 5.36044 5.42120 5.44930 5.50175 5.57555 5.57980 5.62067 5.75706 5.77294 5.85400 5.87248 5.94526 6.07116 6.10287 6.26429 6.43907 6.46899 6.51911 6.54069 6.62504 6.70330 6.77280 6.99392 7.55670 7.62178 7.62797 7.82979 8.26201 9.22220 9.82337 10.48128 11.41148 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003492 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.448704 B = 8015.531042 C = 8366.416605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.124 4.124 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.080 4.080 9 C 0.102 3.898 10 O -0.376 6.376 11 C 0.073 3.927 12 H 0.066 0.934 13 C -0.137 4.137 14 C 0.179 3.821 15 N -0.604 5.604 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.118 3.882 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.135 0.865 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.046 0.954 40 H 0.253 0.747 41 H 0.036 0.964 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 1.385 -20.906 21.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.080 4.080 4 C -0.139 4.139 5 C -0.142 4.142 6 C -0.146 4.146 7 C -0.110 4.110 8 C -0.080 4.080 9 C 0.025 3.975 10 O -0.295 6.295 11 C 0.015 3.985 12 H 0.084 0.916 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.332 5.332 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.009 4.009 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.153 0.847 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.543 1.546 -20.688 20.900 hybrid contribution 0.350 -0.773 0.712 1.108 sum -2.193 0.772 -19.975 20.110 Atomic orbital electron populations 1.21750 0.94655 1.01804 1.02299 1.20576 0.96317 0.92726 1.03027 1.19618 0.99780 0.96198 0.92440 1.20908 1.00693 0.95259 0.97068 1.21102 1.00233 0.94851 0.97988 1.21177 1.00810 0.99998 0.92584 1.21101 0.96872 0.94388 0.98590 1.19632 1.00072 0.94933 0.93367 1.21226 0.99489 0.92098 0.84661 1.87831 1.88134 1.39205 1.14314 1.23427 0.97379 0.96318 0.81423 0.91562 1.22976 1.00505 0.97620 0.96404 1.21169 0.93794 0.89709 0.89928 1.44352 1.52465 1.36283 1.00098 1.19024 1.21236 1.08945 0.86570 0.90465 1.24811 0.99704 0.98942 0.96967 1.69950 1.37703 1.33858 1.15504 0.86178 0.78648 0.80037 0.80762 1.21135 1.21558 1.21165 1.21932 0.95165 0.97482 0.86287 0.92359 0.92604 0.92273 0.91039 0.90747 0.86294 0.86398 0.86200 0.84732 0.92171 0.92022 0.91482 0.91841 0.93353 0.93573 0.93663 0.94561 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.88 37.16 0.37 -0.91 16 2 C -0.09 -0.84 5.57 -27.88 -0.16 -0.99 16 3 C -0.08 -0.91 5.13 -104.63 -0.54 -1.45 16 4 C -0.12 -1.25 9.68 -39.58 -0.38 -1.63 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 7 C -0.09 -1.22 9.38 -39.58 -0.37 -1.59 16 8 C -0.08 -1.06 5.88 -104.62 -0.62 -1.67 16 9 C 0.10 1.42 4.99 36.01 0.18 1.60 16 10 O -0.38 -6.33 8.63 -35.23 -0.30 -6.63 16 11 C 0.07 1.36 3.49 -24.58 -0.09 1.27 16 12 H 0.07 1.19 7.90 -51.93 -0.41 0.78 16 13 C -0.14 -2.69 6.69 -24.89 -0.17 -2.86 16 14 C 0.18 4.44 5.37 -3.07 -0.02 4.42 16 15 N -0.60 -15.91 3.39 -170.07 -0.58 -16.48 16 16 C -0.23 -6.53 10.28 -15.06 -0.15 -6.68 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 19 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C 0.12 2.57 6.97 -2.52 -0.02 2.55 16 25 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 29 H 0.07 0.71 6.84 -51.93 -0.36 0.36 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.89 7.01 -52.49 -0.37 1.52 16 34 H 0.06 0.77 6.73 -51.93 -0.35 0.42 16 35 H 0.06 0.84 7.51 -51.92 -0.39 0.45 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 39 H 0.05 1.26 7.51 -51.93 -0.39 0.87 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -30.83 336.98 -9.87 -40.70 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.77 Total: -1.38 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -2.85 Total: -11.76 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.01 Total: -43.24 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.30 Total: -6.63 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.83 -9.87 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224217981.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.887 kcal (2) G-P(sol) polarization free energy of solvation -30.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds