Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46999 * 2 1 4 4 C 1.38256 * 119.99755 * 264.99649 * 3 2 1 5 5 C 1.38216 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99744 * 359.96154 * 5 4 3 7 7 C 1.38212 * 120.00300 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00186 * 85.17279 * 3 2 1 9 9 C 1.50698 * 120.00333 * 0.03695 * 8 3 2 10 10 O 1.42895 * 109.47522 * 180.19775 * 9 8 3 11 11 C 1.42895 * 114.00318 * 180.02562 * 10 9 8 12 12 C 1.53945 * 113.73212 * 248.76270 * 11 10 9 13 13 N 1.48189 * 86.10114 * 221.95537 * 12 11 10 14 14 C 1.46899 * 111.07232 * 137.51991 * 13 12 11 15 15 C 1.50702 * 109.46933 * 70.56572 * 14 13 12 16 16 H 1.08003 * 120.00084 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99739 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47253 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47194 * 119.99952 * 19 17 15 22 22 H 1.48500 * 109.47354 * 239.99864 * 19 17 15 23 23 C 1.47959 * 90.80073 * 24.59686 * 13 12 11 24 24 H 1.09006 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47205 * 300.00147 * 1 2 3 26 26 H 1.08995 * 109.46975 * 60.00173 * 1 2 3 27 27 H 1.08999 * 109.47047 * 239.99325 * 2 1 3 28 28 H 1.09007 * 109.46624 * 119.99606 * 2 1 3 29 29 H 1.08002 * 120.00247 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.00025 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99759 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99812 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46916 * 300.19618 * 9 8 3 34 34 H 1.08997 * 109.47096 * 60.19168 * 9 8 3 35 35 H 1.08998 * 112.93782 * 20.32472 * 11 10 9 36 36 H 1.09003 * 113.75657 * 336.23449 * 12 11 10 37 37 H 1.08997 * 113.75706 * 107.60111 * 12 11 10 38 38 H 1.08991 * 109.47221 * 190.56700 * 14 13 12 39 39 H 1.08999 * 109.46708 * 310.56479 * 14 13 12 40 40 H 0.97003 * 120.00474 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.76318 * 221.08688 * 23 13 12 42 42 H 1.09001 * 113.85976 * 89.73431 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0377 -1.1928 5 6 2.8224 3.3406 -1.1928 6 6 2.9541 4.0273 -0.0001 7 6 2.6240 3.4111 1.1922 8 6 2.1677 2.1059 1.1926 9 6 1.8138 1.4320 2.4932 10 8 2.0326 2.3395 3.5751 11 6 1.7264 1.7961 4.8607 12 6 0.4922 2.4332 5.5247 13 7 1.2823 2.4137 6.7783 14 6 1.1184 3.6678 7.5255 15 6 -0.2747 3.7339 8.0965 16 1 -0.9690 2.9254 7.9214 17 6 -0.6631 4.8270 8.8414 18 7 0.1818 5.8123 9.0534 19 14 -2.3901 4.9094 9.5486 20 1 -3.1394 3.6848 9.1690 21 1 -2.3149 5.0042 11.0287 22 1 -3.0888 6.1044 9.0110 23 6 2.5449 2.4171 6.0070 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2577 1.5015 -2.1246 30 1 3.0797 3.8224 -2.1246 31 1 3.3148 5.0452 -0.0001 32 1 2.7265 3.9477 2.1239 33 1 0.7653 1.1347 2.4749 34 1 2.4394 0.5495 2.6271 35 1 1.7157 0.7062 4.8696 36 1 0.2678 3.4366 5.1627 37 1 -0.3812 1.7816 5.5445 38 1 1.8456 3.7052 8.3364 39 1 1.2772 4.5130 6.8558 40 1 -0.0913 6.5813 9.5778 41 1 3.3085 1.7526 6.4114 42 1 2.9237 3.4149 5.7857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224218157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = 2.923316 kcal Electronic energy + Delta-G solvation = -20677.353942 eV Core-core repulsion = 17623.006938 eV Total energy + Delta-G solvation = -3054.347004 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90731 -39.15065 -36.45692 -34.40762 -32.85326 -31.60856 -29.59094 -28.97968 -26.28858 -25.59403 -24.72985 -23.98122 -21.96167 -21.36780 -20.63621 -19.27000 -16.98266 -16.66517 -16.31331 -15.51369 -15.41204 -15.25179 -14.85265 -14.33239 -13.99693 -13.80107 -13.71744 -13.45506 -13.11110 -12.97086 -12.32399 -12.05846 -12.03640 -11.93038 -11.76133 -11.46450 -11.35746 -11.15259 -10.90475 -10.86947 -10.69142 -10.57791 -10.24725 -9.65613 -9.28531 -9.13355 -8.82853 -8.60985 -8.48971 -7.80411 -6.04354 -4.06200 1.24761 1.35401 3.30502 3.37616 3.42689 3.67817 3.72741 4.42548 4.58235 4.66030 4.83455 4.86505 4.98062 5.00428 5.02721 5.13725 5.21947 5.30476 5.32079 5.39453 5.44316 5.47350 5.54820 5.69018 5.79176 5.89163 5.90941 6.03460 6.07392 6.13421 6.19504 6.37579 6.42895 6.47269 6.53416 6.59784 6.69288 6.95184 7.24248 7.47821 7.63900 7.88559 8.11652 8.42181 9.01175 9.58216 11.06994 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003326 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.085655 B = 8415.515841 C = 8619.314028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.081 4.081 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.091 4.091 8 C -0.083 4.083 9 C 0.102 3.898 10 O -0.374 6.374 11 C 0.053 3.947 12 C 0.006 3.994 13 N -0.476 5.476 14 C 0.163 3.837 15 C -0.510 4.510 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.002 3.998 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.001 0.999 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -9.579 -20.706 23.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.125 4.125 3 C -0.081 4.081 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.145 4.145 7 C -0.109 4.109 8 C -0.083 4.083 9 C 0.025 3.975 10 O -0.292 6.292 11 C -0.005 4.005 12 C -0.123 4.123 13 N -0.201 5.201 14 C 0.037 3.963 15 C -0.548 4.548 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.018 0.982 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.679 -9.709 -20.131 22.835 hybrid contribution -0.833 0.797 -0.010 1.153 sum 3.847 -8.912 -20.141 22.359 Atomic orbital electron populations 1.21759 0.94567 1.01802 1.02487 1.20565 0.96386 0.92686 1.02853 1.19608 0.99809 0.96231 0.92438 1.20912 1.00662 0.95296 0.97074 1.21120 1.00084 0.94819 0.98017 1.21195 1.00657 1.00042 0.92568 1.21112 0.96784 0.94318 0.98682 1.19607 1.00363 0.94997 0.93332 1.21251 0.99722 0.91724 0.84778 1.87936 1.87664 1.39360 1.14276 1.24431 0.97267 0.97703 0.81146 1.24228 0.96391 1.00820 0.90873 1.68558 1.01325 1.37900 1.12321 1.20198 0.98116 0.84445 0.93558 1.21129 0.97412 1.04118 1.32161 0.91961 1.24996 0.97702 0.95544 0.96346 1.69970 1.35084 1.08473 1.40159 0.86433 0.84234 0.77945 0.78773 1.19659 1.20948 1.21037 1.24140 0.95828 1.00641 0.92093 0.92288 0.92259 0.92521 0.91059 0.90936 0.86265 0.86333 0.86107 0.84733 0.91909 0.92218 0.89408 0.90734 0.90447 0.94902 0.98166 0.92922 0.90046 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.88 37.16 0.37 -0.84 16 2 C -0.09 -0.74 5.57 -27.88 -0.16 -0.89 16 3 C -0.08 -0.86 5.13 -104.63 -0.54 -1.40 16 4 C -0.12 -1.20 9.68 -39.58 -0.38 -1.58 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 6 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 7 C -0.09 -1.19 9.38 -39.58 -0.37 -1.56 16 8 C -0.08 -1.04 5.88 -104.63 -0.62 -1.65 16 9 C 0.10 1.27 4.95 36.00 0.18 1.45 16 10 O -0.37 -5.83 8.84 -35.23 -0.31 -6.15 16 11 C 0.05 0.85 4.48 -25.79 -0.12 0.74 16 12 C 0.01 0.12 7.32 -2.63 -0.02 0.10 16 13 N -0.48 -10.60 6.25 -239.73 -1.50 -12.10 16 14 C 0.16 4.36 4.58 -4.98 -0.02 4.34 16 15 C -0.51 -14.65 8.84 -34.44 -0.30 -14.96 16 16 H 0.06 1.78 7.80 -52.48 -0.41 1.37 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.00 0.04 7.81 -2.76 -0.02 0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.54 6.80 -51.93 -0.35 0.19 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 28 H 0.07 0.59 6.84 -51.93 -0.36 0.23 16 29 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.90 7.01 -52.49 -0.37 1.53 16 33 H 0.06 0.74 6.78 -51.93 -0.35 0.39 16 34 H 0.06 0.66 7.52 -51.93 -0.39 0.27 16 35 H 0.09 1.25 7.89 -51.93 -0.41 0.84 16 36 H 0.07 1.59 7.79 -51.93 -0.40 1.19 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.00 0.01 7.70 -51.93 -0.40 -0.39 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.07 1.36 7.80 -51.93 -0.40 0.95 16 LS Contribution 343.45 15.07 5.18 5.18 Total: -1.00 -31.18 343.45 -10.59 -41.77 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -6.78 Total: -1.10 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: -2.89 Total: -18.18 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: -0.76 Total: -38.41 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.31 Total: -6.15 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.18 -10.59 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224218157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.696 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds