Wall clock time and date at job start Mon Mar 30 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46999 * 2 1 4 4 C 1.38256 * 119.99755 * 264.99649 * 3 2 1 5 5 C 1.38216 * 120.00037 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99744 * 359.96154 * 5 4 3 7 7 C 1.38212 * 120.00300 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00186 * 85.17279 * 3 2 1 9 9 C 1.50698 * 120.00333 * 0.03695 * 8 3 2 10 10 O 1.42895 * 109.47522 * 180.19775 * 9 8 3 11 11 C 1.42895 * 114.00318 * 180.02562 * 10 9 8 12 12 C 1.53945 * 113.73212 * 248.76270 * 11 10 9 13 13 N 1.48189 * 86.10114 * 221.95537 * 12 11 10 14 14 C 1.46899 * 111.07232 * 137.51991 * 13 12 11 15 15 C 1.50702 * 109.46933 * 70.56572 * 14 13 12 16 16 H 1.08003 * 120.00084 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99739 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00043 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47253 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47194 * 119.99952 * 19 17 15 22 22 H 1.48500 * 109.47354 * 239.99864 * 19 17 15 23 23 C 1.47959 * 90.80073 * 24.59686 * 13 12 11 24 24 H 1.09006 * 109.46970 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47205 * 300.00147 * 1 2 3 26 26 H 1.08995 * 109.46975 * 60.00173 * 1 2 3 27 27 H 1.08999 * 109.47047 * 239.99325 * 2 1 3 28 28 H 1.09007 * 109.46624 * 119.99606 * 2 1 3 29 29 H 1.08002 * 120.00247 * 0.02562 * 4 3 2 30 30 H 1.08005 * 120.00025 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.99759 * 179.97438 * 6 5 4 32 32 H 1.08002 * 119.99812 * 180.02562 * 7 6 5 33 33 H 1.09004 * 109.46916 * 300.19618 * 9 8 3 34 34 H 1.08997 * 109.47096 * 60.19168 * 9 8 3 35 35 H 1.08998 * 112.93782 * 20.32472 * 11 10 9 36 36 H 1.09003 * 113.75657 * 336.23449 * 12 11 10 37 37 H 1.08997 * 113.75706 * 107.60111 * 12 11 10 38 38 H 1.08991 * 109.47221 * 190.56700 * 14 13 12 39 39 H 1.08999 * 109.46708 * 310.56479 * 14 13 12 40 40 H 0.97003 * 120.00474 * 180.02562 * 18 17 15 41 41 H 1.08999 * 113.76318 * 221.08688 * 23 13 12 42 42 H 1.09001 * 113.85976 * 89.73431 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0377 -1.1928 5 6 2.8224 3.3406 -1.1928 6 6 2.9541 4.0273 -0.0001 7 6 2.6240 3.4111 1.1922 8 6 2.1677 2.1059 1.1926 9 6 1.8138 1.4320 2.4932 10 8 2.0326 2.3395 3.5751 11 6 1.7264 1.7961 4.8607 12 6 0.4922 2.4332 5.5247 13 7 1.2823 2.4137 6.7783 14 6 1.1184 3.6678 7.5255 15 6 -0.2747 3.7339 8.0965 16 1 -0.9690 2.9254 7.9214 17 6 -0.6631 4.8270 8.8414 18 7 0.1818 5.8123 9.0534 19 14 -2.3901 4.9094 9.5486 20 1 -3.1394 3.6848 9.1690 21 1 -2.3149 5.0042 11.0287 22 1 -3.0888 6.1044 9.0110 23 6 2.5449 2.4171 6.0070 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.2577 1.5015 -2.1246 30 1 3.0797 3.8224 -2.1246 31 1 3.3148 5.0452 -0.0001 32 1 2.7265 3.9477 2.1239 33 1 0.7653 1.1347 2.4749 34 1 2.4394 0.5495 2.6271 35 1 1.7157 0.7062 4.8696 36 1 0.2678 3.4366 5.1627 37 1 -0.3812 1.7816 5.5445 38 1 1.8456 3.7052 8.3364 39 1 1.2772 4.5130 6.8558 40 1 -0.0913 6.5813 9.5778 41 1 3.3085 1.7526 6.4114 42 1 2.9237 3.4149 5.7857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224218157.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:56 Heat of formation + Delta-G solvation = -16.399043 kcal Electronic energy + Delta-G solvation = -20678.191822 eV Core-core repulsion = 17623.006938 eV Total energy + Delta-G solvation = -3055.184884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03640 -40.40310 -37.76424 -35.15048 -34.98655 -32.60267 -30.90483 -30.30401 -27.49620 -27.17643 -26.44610 -24.69836 -23.49961 -22.57346 -21.50284 -20.75427 -18.67109 -18.07326 -17.59045 -16.84946 -16.60608 -16.42184 -16.04596 -15.91262 -15.19254 -15.04059 -14.62191 -14.50303 -14.33032 -13.99188 -13.89048 -13.69368 -13.47960 -13.03734 -12.95872 -12.70684 -12.63816 -12.61575 -12.32679 -12.17476 -12.10774 -11.67851 -11.47744 -11.46381 -11.18907 -10.68640 -10.57780 -9.68332 -9.66497 -9.46012 -8.26414 -6.37718 0.41718 0.50058 1.38247 1.39048 1.53022 2.36281 2.54726 2.84027 3.06613 3.27093 3.52432 3.79416 3.89821 4.01924 4.06854 4.18262 4.31492 4.31840 4.41773 4.42084 4.56008 4.56979 4.64321 4.68742 4.74292 4.75371 4.77132 4.88134 4.94993 5.07274 5.09945 5.11338 5.16263 5.22834 5.41932 5.47878 5.58325 5.64592 5.72065 5.73243 6.06677 6.12642 6.29667 6.34771 6.77169 7.32367 8.85882 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003326 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.085655 B = 8415.515841 C = 8619.314028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.083 4.083 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.102 4.102 9 C 0.099 3.901 10 O -0.389 6.389 11 C 0.082 3.918 12 C -0.001 4.001 13 N -0.488 5.488 14 C 0.179 3.821 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.000 4.000 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.262 1.262 21 H -0.275 1.275 22 H -0.277 1.277 23 C -0.003 4.003 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.123 0.877 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.004 0.996 39 H -0.030 1.030 40 H 0.266 0.734 41 H 0.107 0.893 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 -11.615 -22.486 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.083 4.083 4 C -0.140 4.140 5 C -0.141 4.141 6 C -0.156 4.156 7 C -0.137 4.137 8 C -0.102 4.102 9 C 0.023 3.977 10 O -0.308 6.308 11 C 0.024 3.976 12 C -0.130 4.130 13 N -0.212 5.212 14 C 0.051 3.949 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.574 5.574 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.131 4.131 24 H 0.092 0.908 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.149 0.851 32 H 0.129 0.871 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.022 0.978 39 H -0.012 1.012 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.884 -11.761 -21.930 25.186 hybrid contribution -0.521 1.436 0.435 1.588 sum 3.364 -10.325 -21.495 24.082 Atomic orbital electron populations 1.21750 0.94402 1.02567 1.01776 1.20624 0.96406 0.91285 1.04018 1.19895 0.99190 0.97321 0.91925 1.21307 0.99476 0.95334 0.97914 1.21461 0.99154 0.95047 0.98407 1.21386 1.00827 1.00764 0.92619 1.21084 0.98891 0.95130 0.98575 1.19731 1.01337 0.95006 0.94099 1.21458 1.00677 0.91745 0.83795 1.87937 1.87447 1.40772 1.14612 1.24096 0.93653 0.98828 0.81038 1.24258 0.98292 1.00137 0.90291 1.68450 1.04046 1.34826 1.13839 1.19841 0.96785 0.85660 0.92577 1.21433 0.98208 1.04436 1.32686 0.91987 1.25984 1.02362 0.94936 0.96507 1.70097 1.37410 1.09146 1.40774 0.85271 0.78541 0.78378 0.78059 1.18605 1.20089 1.20243 1.24219 0.95257 1.00726 0.92939 0.90782 0.93699 0.92522 0.89172 0.90526 0.83519 0.83738 0.85139 0.87096 0.91112 0.90200 0.85990 0.93403 0.89203 0.97763 1.01230 0.92527 0.87525 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.88 71.98 0.71 -1.32 16 2 C -0.09 -1.20 5.57 29.85 0.17 -1.03 16 3 C -0.08 -1.61 5.13 -19.87 -0.10 -1.71 16 4 C -0.12 -2.10 9.68 22.27 0.22 -1.89 16 5 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 6 C -0.14 -3.07 10.05 22.27 0.22 -2.85 16 7 C -0.12 -3.19 9.38 22.27 0.21 -2.98 16 8 C -0.10 -2.48 5.88 -19.87 -0.12 -2.59 16 9 C 0.10 2.35 4.95 71.24 0.35 2.70 16 10 O -0.39 -12.10 8.84 -148.98 -1.32 -13.42 16 11 C 0.08 2.59 4.48 31.24 0.14 2.73 16 12 C 0.00 -0.02 7.32 86.37 0.63 0.61 16 13 N -0.49 -22.12 6.25 -915.56 -5.72 -27.84 16 14 C 0.18 10.02 4.58 85.56 0.39 10.41 16 15 C -0.53 -31.20 8.84 25.60 0.23 -30.98 16 16 H 0.06 3.58 7.80 -2.91 -0.02 3.55 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.93 -57.76 13.29 21.45 0.28 -57.48 16 19 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.00 -0.09 7.81 86.41 0.67 0.58 16 24 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.04 0.74 6.80 -2.39 -0.02 0.73 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.93 8.05 -2.39 -0.02 0.91 16 28 H 0.08 1.01 6.84 -2.38 -0.02 0.99 16 29 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 32 H 0.11 3.40 7.01 -2.91 -0.02 3.38 16 33 H 0.07 1.57 6.78 -2.38 -0.02 1.55 16 34 H 0.08 1.57 7.52 -2.39 -0.02 1.55 16 35 H 0.12 3.08 7.89 -2.39 -0.02 3.06 16 36 H 0.05 2.15 7.79 -2.39 -0.02 2.13 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 39 H -0.03 -1.83 7.70 -2.39 -0.02 -1.84 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 41 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.05 2.18 7.80 -2.39 -0.02 2.17 16 Total: -1.00 -69.32 343.45 0.66 -68.66 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 0.98 Total: 12.69 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.41 Total: -29.84 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -5.44 Total: -85.32 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.32 Total: -13.42 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.32 0.66 -68.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224218157.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.264 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds