Wall clock time and date at job start Mon Mar 30 2020 02:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47146 * 120.00099 * 2 1 3 5 5 C 1.38289 * 119.96928 * 299.97890 * 4 2 1 6 6 C 1.38248 * 120.10948 * 179.97438 * 5 4 2 7 7 C 1.38169 * 120.05584 * 359.76003 * 6 5 4 8 8 C 1.38714 * 119.93969 * 0.53987 * 7 6 5 9 9 O 1.35899 * 120.05206 * 179.72221 * 8 7 6 10 10 C 1.42898 * 117.00204 * 5.20475 * 9 8 7 11 11 H 1.09000 * 110.63960 * 33.11849 * 10 9 8 12 12 C 1.55153 * 110.72242 * 156.26336 * 10 9 8 13 13 C 1.54911 * 101.58587 * 153.86667 * 12 10 9 14 14 N 1.47427 * 104.92552 * 322.93346 * 13 12 10 15 15 C 1.36932 * 125.65128 * 204.15479 * 14 13 12 16 16 H 1.08003 * 120.00626 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99828 * 0.02770 * 15 14 13 18 18 N 1.31611 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47498 * 89.99953 * 19 17 15 21 21 H 1.48503 * 109.46797 * 210.00061 * 19 17 15 22 22 H 1.48501 * 109.47248 * 329.99391 * 19 17 15 23 23 C 1.47295 * 108.55875 * 24.15816 * 14 13 12 24 24 C 1.38117 * 119.97324 * 120.00015 * 4 2 1 25 25 H 1.09002 * 109.46730 * 59.99780 * 1 2 3 26 26 H 1.08995 * 109.47316 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47045 * 300.00386 * 1 2 3 28 28 H 1.09001 * 109.47079 * 240.00378 * 2 1 3 29 29 H 1.08992 * 109.47409 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47004 * 300.00434 * 3 2 1 31 31 H 1.09006 * 109.47123 * 59.99880 * 3 2 1 32 32 H 1.07997 * 119.94950 * 359.97438 * 5 4 2 33 33 H 1.08004 * 119.97091 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.02770 * 180.25614 * 7 6 5 35 35 H 1.09005 * 111.00231 * 35.79027 * 12 10 9 36 36 H 1.09004 * 111.00459 * 271.94024 * 12 10 9 37 37 H 1.08999 * 110.36854 * 81.82554 * 13 12 10 38 38 H 1.09004 * 110.36671 * 204.04537 * 13 12 10 39 39 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.85369 * 239.49861 * 23 14 13 41 41 H 1.08994 * 109.87525 * 118.35901 * 23 14 13 42 42 H 1.08001 * 120.03014 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6982 -0.2372 2.4861 6 6 2.1570 -0.8870 3.6169 7 6 2.9467 -2.0141 3.4948 8 6 3.2884 -2.4871 2.2363 9 8 4.0696 -3.5923 2.1136 10 6 4.4092 -4.2836 3.3172 11 1 3.5970 -4.2167 4.0410 12 6 4.7583 -5.7657 3.0193 13 6 5.6999 -6.1073 4.2010 14 7 6.4872 -4.8812 4.4257 15 6 7.7223 -4.8225 5.0140 16 1 8.2188 -3.8708 5.1337 17 6 8.3363 -5.9861 5.4565 18 7 7.7312 -7.1458 5.3111 19 14 10.0210 -5.9059 6.2596 20 1 9.8627 -5.7273 7.7253 21 1 10.7578 -7.1670 5.9913 22 1 10.7819 -4.7597 5.7006 23 6 5.7223 -3.7321 3.9118 24 6 2.8264 -1.8333 1.1030 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0779 0.6414 2.5837 33 1 1.8944 -0.5157 4.5965 34 1 3.3014 -2.5237 4.3784 35 1 5.2777 -5.8607 2.0657 36 1 3.8644 -6.3892 3.0392 37 1 5.1192 -6.3535 5.0899 38 1 6.3562 -6.9362 3.9357 39 1 8.1601 -7.9589 5.6206 40 1 6.2951 -3.2230 3.1367 41 1 5.4997 -3.0415 4.7251 42 1 3.0876 -2.2021 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225240238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:35 Heat of formation + Delta-G solvation = 2.040123 kcal Electronic energy + Delta-G solvation = -20977.570680 eV Core-core repulsion = 17923.185378 eV Total energy + Delta-G solvation = -3054.385302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.17524 -38.36643 -36.35415 -34.85154 -32.35608 -30.55036 -29.46245 -28.89209 -27.33740 -27.32985 -24.63619 -23.26703 -22.49874 -20.84558 -20.24352 -19.43780 -17.62599 -17.03695 -16.02083 -15.73748 -15.25858 -14.80327 -14.71527 -14.15294 -13.91708 -13.66272 -13.49940 -13.43376 -12.79986 -12.49906 -12.48541 -12.20425 -11.86927 -11.79365 -11.65275 -11.33192 -11.22331 -11.03741 -10.92085 -10.83348 -10.67370 -10.36908 -10.21233 -10.04531 -9.82162 -9.61720 -8.75268 -8.69703 -7.97134 -6.90021 -5.69595 -3.11879 1.40013 1.57414 3.38714 3.42966 3.45200 3.50309 3.84235 4.46107 4.57851 4.69863 4.94490 5.02059 5.16772 5.19984 5.24744 5.33770 5.39468 5.42094 5.43979 5.50512 5.57514 5.62592 5.64462 5.70103 5.77259 5.87417 6.03215 6.05065 6.10626 6.25228 6.38900 6.44696 6.47964 6.52781 6.62309 6.63980 6.66792 6.96132 7.41838 7.57543 7.73710 7.82009 8.29770 9.16847 9.76953 10.40788 11.34744 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.003364 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.794180 B = 8321.237259 C = 8557.130238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.043 4.043 5 C -0.163 4.163 6 C -0.077 4.077 7 C -0.213 4.213 8 C 0.144 3.856 9 O -0.305 6.305 10 C 0.069 3.931 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.223 4.223 16 H 0.079 0.921 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.281 1.281 23 C 0.119 3.881 24 C -0.157 4.157 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.114 0.886 39 H 0.253 0.747 40 H 0.036 0.964 41 H 0.026 0.974 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.398 12.537 -8.523 20.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.043 4.043 5 C -0.181 4.181 6 C -0.096 4.096 7 C -0.231 4.231 8 C 0.098 3.902 9 O -0.218 6.218 10 C 0.013 3.987 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.027 3.973 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.007 4.007 24 C -0.176 4.176 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.034 0.966 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.044 0.956 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.142 12.301 -8.603 20.623 hybrid contribution 0.817 0.067 0.816 1.156 sum -13.325 12.368 -7.787 19.778 Atomic orbital electron populations 1.21845 0.94317 1.02071 1.01776 1.20122 0.95914 0.96029 0.95424 1.21850 1.01441 0.95009 1.01766 1.19562 0.95841 0.94152 0.94712 1.20763 1.03848 1.01629 0.91836 1.20901 0.95867 0.94320 0.98476 1.21401 1.04591 1.00227 0.96929 1.19091 0.90216 0.87287 0.93628 1.86156 1.63764 1.37153 1.34677 1.23674 0.97015 0.93315 0.84695 0.90483 1.23207 1.00392 0.91481 1.02387 1.21998 0.91677 0.92258 0.91339 1.44439 1.17361 1.00950 1.70127 1.19088 0.91597 0.93707 1.30717 0.90363 1.24800 0.99097 0.95257 1.01453 1.69754 1.37815 0.97426 1.52194 0.86032 0.83222 0.76948 0.79058 1.21571 1.21560 1.20625 1.21735 0.90988 0.91778 0.96228 1.20292 1.02494 0.97588 0.97243 0.92496 0.92475 0.92423 0.90401 0.92398 0.92488 0.92422 0.86437 0.86094 0.85128 0.90803 0.91538 0.96591 0.86847 0.93592 0.94654 0.95617 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.01 37.16 0.33 -0.79 16 2 C -0.06 -0.52 3.09 -91.77 -0.28 -0.80 16 3 C -0.14 -1.17 9.01 37.16 0.33 -0.83 16 4 C -0.04 -0.50 4.78 -104.65 -0.50 -1.00 16 5 C -0.16 -1.87 8.71 -39.56 -0.34 -2.22 16 6 C -0.08 -0.97 10.04 -39.60 -0.40 -1.37 16 7 C -0.21 -3.16 8.91 -39.43 -0.35 -3.51 16 8 C 0.14 2.31 6.67 -39.22 -0.26 2.05 16 9 O -0.30 -5.54 9.86 -19.42 -0.19 -5.73 16 10 C 0.07 1.31 2.74 -24.90 -0.07 1.24 16 11 H 0.08 1.35 6.25 -51.93 -0.32 1.03 16 12 C -0.14 -2.69 6.81 -24.58 -0.17 -2.85 16 13 C 0.15 3.71 5.88 -2.53 -0.01 3.70 16 14 N -0.60 -15.76 3.40 -169.85 -0.58 -16.33 16 15 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 16 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 19 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.12 2.62 6.82 -2.91 -0.02 2.60 16 24 C -0.16 -2.20 9.61 -39.44 -0.38 -2.58 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.44 7.39 -51.93 -0.38 0.05 16 28 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 32 H 0.12 1.10 7.10 -52.49 -0.37 0.73 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.13 1.97 5.63 -52.49 -0.30 1.68 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.11 3.09 5.87 -51.93 -0.30 2.78 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 41 H 0.03 0.55 7.82 -51.93 -0.41 0.15 16 42 H 0.13 1.64 7.94 -52.49 -0.42 1.22 16 LS Contribution 334.57 15.07 5.04 5.04 Total: -1.00 -30.08 334.57 -9.20 -39.28 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.64 Total: 0.17 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -2.37 Total: -13.24 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.02 Total: -42.62 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.19 Total: -5.73 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.08 -9.20 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225240238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.322 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds