Wall clock time and date at job start Mon Mar 30 2020 02:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.50698 * 109.47146 * 120.00099 * 2 1 3 5 5 C 1.38289 * 119.96928 * 299.97890 * 4 2 1 6 6 C 1.38248 * 120.10948 * 179.97438 * 5 4 2 7 7 C 1.38169 * 120.05584 * 359.76003 * 6 5 4 8 8 C 1.38714 * 119.93969 * 0.53987 * 7 6 5 9 9 O 1.35899 * 120.05206 * 179.72221 * 8 7 6 10 10 C 1.42898 * 117.00204 * 5.20475 * 9 8 7 11 11 H 1.09000 * 110.63960 * 33.11849 * 10 9 8 12 12 C 1.55153 * 110.72242 * 156.26336 * 10 9 8 13 13 C 1.54911 * 101.58587 * 153.86667 * 12 10 9 14 14 N 1.47427 * 104.92552 * 322.93346 * 13 12 10 15 15 C 1.36932 * 125.65128 * 204.15479 * 14 13 12 16 16 H 1.08003 * 120.00626 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99828 * 0.02770 * 15 14 13 18 18 N 1.31611 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99840 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47498 * 89.99953 * 19 17 15 21 21 H 1.48503 * 109.46797 * 210.00061 * 19 17 15 22 22 H 1.48501 * 109.47248 * 329.99391 * 19 17 15 23 23 C 1.47295 * 108.55875 * 24.15816 * 14 13 12 24 24 C 1.38117 * 119.97324 * 120.00015 * 4 2 1 25 25 H 1.09002 * 109.46730 * 59.99780 * 1 2 3 26 26 H 1.08995 * 109.47316 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47045 * 300.00386 * 1 2 3 28 28 H 1.09001 * 109.47079 * 240.00378 * 2 1 3 29 29 H 1.08992 * 109.47409 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47004 * 300.00434 * 3 2 1 31 31 H 1.09006 * 109.47123 * 59.99880 * 3 2 1 32 32 H 1.07997 * 119.94950 * 359.97438 * 5 4 2 33 33 H 1.08004 * 119.97091 * 180.02562 * 6 5 4 34 34 H 1.07992 * 120.02770 * 180.25614 * 7 6 5 35 35 H 1.09005 * 111.00231 * 35.79027 * 12 10 9 36 36 H 1.09004 * 111.00459 * 271.94024 * 12 10 9 37 37 H 1.08999 * 110.36854 * 81.82554 * 13 12 10 38 38 H 1.09004 * 110.36671 * 204.04537 * 13 12 10 39 39 H 0.97002 * 120.00236 * 180.02562 * 18 17 15 40 40 H 1.09001 * 109.85369 * 239.49861 * 23 14 13 41 41 H 1.08994 * 109.87525 * 118.35901 * 23 14 13 42 42 H 1.08001 * 120.03014 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6982 -0.2372 2.4861 6 6 2.1570 -0.8870 3.6169 7 6 2.9467 -2.0141 3.4948 8 6 3.2884 -2.4871 2.2363 9 8 4.0696 -3.5923 2.1136 10 6 4.4092 -4.2836 3.3172 11 1 3.5970 -4.2167 4.0410 12 6 4.7583 -5.7657 3.0193 13 6 5.6999 -6.1073 4.2010 14 7 6.4872 -4.8812 4.4257 15 6 7.7223 -4.8225 5.0140 16 1 8.2188 -3.8708 5.1337 17 6 8.3363 -5.9861 5.4565 18 7 7.7312 -7.1458 5.3111 19 14 10.0210 -5.9059 6.2596 20 1 9.8627 -5.7273 7.7253 21 1 10.7578 -7.1670 5.9913 22 1 10.7819 -4.7597 5.7006 23 6 5.7223 -3.7321 3.9118 24 6 2.8264 -1.8333 1.1030 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0779 0.6414 2.5837 33 1 1.8944 -0.5157 4.5965 34 1 3.3014 -2.5237 4.3784 35 1 5.2777 -5.8607 2.0657 36 1 3.8644 -6.3892 3.0392 37 1 5.1192 -6.3535 5.0899 38 1 6.3562 -6.9362 3.9357 39 1 8.1601 -7.9589 5.6206 40 1 6.2951 -3.2230 3.1367 41 1 5.4997 -3.0415 4.7251 42 1 3.0876 -2.2021 0.1221 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225240238.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:34 Heat of formation + Delta-G solvation = -13.262777 kcal Electronic energy + Delta-G solvation = -20978.234264 eV Core-core repulsion = 17923.185378 eV Total energy + Delta-G solvation = -3055.048886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37831 -39.62895 -37.94712 -35.78115 -34.32350 -31.75378 -31.09570 -30.06841 -29.07287 -27.92992 -26.58157 -24.33111 -23.56035 -22.27146 -22.02127 -20.64126 -19.05171 -18.76987 -17.23379 -16.90131 -16.72667 -16.54543 -15.91750 -15.53024 -15.29519 -14.83739 -14.47638 -14.38938 -14.25468 -14.07964 -13.73997 -13.46614 -13.15430 -12.98339 -12.91318 -12.75070 -12.72271 -12.38122 -12.26388 -12.05187 -12.01590 -11.86604 -11.62332 -11.57873 -11.48819 -11.36495 -10.80300 -9.75811 -9.11879 -8.97713 -7.82961 -5.28946 0.38222 0.51566 1.45629 1.47808 1.56744 2.14654 2.47583 2.81282 3.27841 3.56960 3.63483 3.75312 3.89384 3.93026 3.96715 4.05766 4.24373 4.35926 4.39032 4.43378 4.53027 4.59912 4.61407 4.71920 4.82923 4.86785 4.91769 4.95168 5.04035 5.05421 5.09838 5.23568 5.33652 5.38892 5.43647 5.44177 5.52456 5.55749 5.70476 5.71331 5.91997 6.23048 6.49723 7.03951 7.68412 8.32189 9.19348 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037993 B = 0.003364 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.794180 B = 8321.237259 C = 8557.130238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.039 4.039 5 C -0.155 4.155 6 C -0.079 4.079 7 C -0.228 4.228 8 C 0.112 3.888 9 O -0.317 6.317 10 C 0.087 3.913 11 H 0.093 0.907 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.624 5.624 15 C -0.246 4.246 16 H 0.079 0.921 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.985 3.015 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.271 1.271 23 C 0.119 3.881 24 C -0.168 4.168 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.001 0.999 38 H 0.083 0.917 39 H 0.251 0.749 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 14.569 -8.960 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.199 4.199 4 C -0.040 4.040 5 C -0.173 4.173 6 C -0.097 4.097 7 C -0.246 4.246 8 C 0.067 3.933 9 O -0.231 6.231 10 C 0.031 3.969 11 H 0.111 0.889 12 C -0.162 4.162 13 C 0.030 3.970 14 N -0.351 5.351 15 C -0.374 4.374 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.812 3.188 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.196 1.196 23 C -0.007 4.007 24 C -0.187 4.187 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.019 0.981 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.612 14.362 -9.055 23.065 hybrid contribution 1.189 -0.448 0.904 1.560 sum -14.422 13.914 -8.151 21.634 Atomic orbital electron populations 1.21834 0.92993 1.01971 1.02950 1.20199 0.96911 0.96359 0.94054 1.21846 1.00743 0.94328 1.02971 1.19932 0.94565 0.93226 0.96235 1.21135 1.03017 1.01919 0.91213 1.21222 0.94933 0.93390 1.00159 1.21450 1.05661 1.01374 0.96136 1.19385 0.91486 0.87459 0.94939 1.86107 1.64859 1.38345 1.33785 1.23340 0.95822 0.92386 0.85367 0.88893 1.23022 1.00430 0.92807 0.99894 1.21780 0.91638 0.91119 0.92455 1.44729 1.17471 1.02736 1.70169 1.19436 0.92842 0.93994 1.31177 0.90308 1.25669 1.02765 0.94920 1.02206 1.69993 1.39106 0.97784 1.52766 0.84991 0.78772 0.76985 0.78021 1.21060 1.21580 1.19588 1.21814 0.92083 0.90798 0.95969 1.20506 1.03011 0.98327 0.96866 0.90851 0.93222 0.91785 0.90348 0.93514 0.90787 0.91785 0.83562 0.83691 0.85960 0.91275 0.88449 0.98103 0.89911 0.93966 0.95895 0.95105 0.85304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.01 71.98 0.65 -1.12 16 2 C -0.06 -0.89 3.09 -11.54 -0.04 -0.93 16 3 C -0.14 -1.90 9.01 71.98 0.65 -1.25 16 4 C -0.04 -0.85 4.78 -19.88 -0.10 -0.95 16 5 C -0.15 -3.12 8.71 22.28 0.19 -2.92 16 6 C -0.08 -1.81 10.04 22.26 0.22 -1.59 16 7 C -0.23 -6.58 8.91 22.37 0.20 -6.38 16 8 C 0.11 3.56 6.67 22.51 0.15 3.71 16 9 O -0.32 -11.55 9.86 -92.42 -0.91 -12.46 16 10 C 0.09 3.31 2.74 31.78 0.09 3.40 16 11 H 0.09 3.22 6.25 -2.39 -0.01 3.20 16 12 C -0.12 -4.87 6.81 31.99 0.22 -4.65 16 13 C 0.15 7.79 5.88 86.86 0.51 8.30 16 14 N -0.62 -33.54 3.40 -691.28 -2.35 -35.89 16 15 C -0.25 -14.21 10.28 84.03 0.86 -13.34 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 18 N -0.95 -56.50 10.09 21.65 0.22 -56.28 16 19 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 C 0.12 5.34 6.82 86.68 0.59 5.94 16 24 C -0.17 -4.57 9.61 22.36 0.21 -4.36 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.73 7.39 -2.39 -0.02 0.71 16 28 H 0.08 1.23 7.87 -2.39 -0.02 1.21 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.78 7.38 -2.38 -0.02 0.76 16 32 H 0.15 2.11 7.10 -2.91 -0.02 2.09 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.12 3.66 5.63 -2.91 -0.02 3.64 16 35 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 37 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.08 4.69 5.87 -2.39 -0.01 4.68 16 39 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.02 1.08 8.06 -2.39 -0.02 1.06 16 41 H 0.03 1.35 7.82 -2.39 -0.02 1.33 16 42 H 0.13 3.30 7.94 -2.91 -0.02 3.28 16 Total: -1.00 -65.84 334.57 4.85 -60.99 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 0.99 Total: 14.94 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 4.88 Total: -19.29 kcal Atomic # 7 Polarization: -90.04 SS G_CDS: -2.13 Total: -92.17 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.91 Total: -12.46 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -65.84 4.85 -60.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225240238.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.722 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds