Wall clock time and date at job start Mon Mar 30 2020 02:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47350 * 2 1 4 4 C 1.50696 * 109.47523 * 120.00639 * 2 1 3 5 5 C 1.38293 * 119.97000 * 299.99541 * 4 2 1 6 6 C 1.38244 * 120.11156 * 179.97438 * 5 4 2 7 7 C 1.38163 * 120.05754 * 0.04861 * 6 5 4 8 8 C 1.38714 * 119.94196 * 359.97211 * 7 6 5 9 9 O 1.35900 * 120.05384 * 179.97438 * 8 7 6 10 10 C 1.42902 * 117.00223 * 354.72032 * 9 8 7 11 11 H 1.09004 * 110.88475 * 321.57595 * 10 9 8 12 12 C 1.55158 * 111.00744 * 197.64823 * 10 9 8 13 13 C 1.54319 * 102.94069 * 206.42464 * 12 10 9 14 14 N 1.47017 * 107.27440 * 22.19396 * 13 12 10 15 15 C 1.36938 * 125.64775 * 181.02775 * 14 13 12 16 16 H 1.08009 * 119.99704 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00141 * 0.03226 * 15 14 13 18 18 N 1.31619 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00026 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47419 * 120.00335 * 19 17 15 22 22 H 1.48502 * 109.47255 * 240.00273 * 19 17 15 23 23 C 1.47425 * 108.70312 * 1.05416 * 14 13 12 24 24 C 1.38121 * 119.97644 * 119.71538 * 4 2 1 25 25 H 1.08994 * 109.47725 * 59.99533 * 1 2 3 26 26 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46568 * 299.99716 * 1 2 3 28 28 H 1.09004 * 109.46568 * 240.00284 * 2 1 3 29 29 H 1.09004 * 109.47053 * 60.00581 * 3 2 1 30 30 H 1.09000 * 109.47157 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47506 * 300.00180 * 3 2 1 32 32 H 1.08000 * 119.93956 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.96630 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.03170 * 179.97438 * 7 6 5 35 35 H 1.09002 * 110.71543 * 324.78622 * 12 10 9 36 36 H 1.08995 * 110.71777 * 88.06069 * 12 10 9 37 37 H 1.09003 * 109.87987 * 262.76979 * 13 12 10 38 38 H 1.09008 * 109.87836 * 141.61315 * 13 12 10 39 39 H 0.97002 * 119.99748 * 179.97438 * 18 17 15 40 40 H 1.08995 * 110.37090 * 217.03473 * 23 14 13 41 41 H 1.09003 * 110.36140 * 94.71348 * 23 14 13 42 42 H 1.08007 * 120.02740 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6981 -0.2376 2.4861 6 6 2.1569 -0.8874 3.6168 7 6 2.9518 -2.0108 3.4946 8 6 3.2889 -2.4869 2.2361 9 8 4.0711 -3.5915 2.1133 10 6 4.6064 -4.1446 3.3173 11 1 4.9002 -3.3560 4.0102 12 6 5.7977 -5.0910 3.0131 13 6 5.7834 -6.0612 4.2131 14 7 4.4275 -6.0337 4.7807 15 6 4.0052 -6.7428 5.8733 16 1 2.9838 -6.6539 6.2130 17 6 4.8898 -7.5759 6.5445 18 7 6.1346 -7.6837 6.1308 19 14 4.3135 -8.5437 8.0346 20 1 2.8809 -8.2493 8.2923 21 1 4.4811 -9.9965 7.7764 22 1 5.1200 -8.1553 9.2194 23 6 3.5976 -5.1168 3.9782 24 6 2.8216 -1.8368 1.1029 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.6768 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.0774 0.6409 2.5837 33 1 1.8941 -0.5163 4.5963 34 1 3.3104 -2.5179 4.3782 35 1 5.6336 -5.6296 2.0798 36 1 6.7338 -4.5338 2.9787 37 1 6.5055 -5.7352 4.9618 38 1 6.0244 -7.0698 3.8772 39 1 6.7529 -8.2656 6.6001 40 1 2.9079 -4.5691 4.6203 41 1 3.0493 -5.6704 3.2159 42 1 3.0791 -2.2082 0.1219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225240239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:39 Heat of formation + Delta-G solvation = 0.146691 kcal Electronic energy + Delta-G solvation = -21014.174651 eV Core-core repulsion = 17959.707244 eV Total energy + Delta-G solvation = -3054.467408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15769 -38.35724 -36.37955 -34.84805 -32.34835 -30.53590 -29.50128 -28.84789 -27.36055 -27.32478 -24.61556 -23.25544 -22.46698 -20.91845 -20.12500 -19.51730 -17.60567 -17.04650 -16.00742 -15.70576 -15.20066 -14.78695 -14.68657 -14.14732 -13.95065 -13.64217 -13.51311 -13.45452 -12.71522 -12.51302 -12.49421 -12.19153 -12.07343 -11.79236 -11.64272 -11.37781 -11.18356 -10.99297 -10.89271 -10.84932 -10.58964 -10.33160 -10.19714 -10.03840 -9.87197 -9.71551 -8.73325 -8.65290 -7.95769 -6.90388 -5.76188 -3.10759 1.42136 1.58963 3.37697 3.42289 3.45476 3.49387 3.86161 4.46646 4.58782 4.70510 4.96658 5.02650 5.19558 5.22689 5.26952 5.33240 5.41289 5.42610 5.45624 5.52366 5.60957 5.63156 5.63301 5.69143 5.77990 5.87684 6.04143 6.05533 6.11765 6.20184 6.35192 6.41897 6.45409 6.51712 6.63673 6.66789 6.68195 6.96934 7.49652 7.53555 7.72384 7.80568 8.19161 9.16070 9.75712 10.40324 11.35685 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.003474 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.994392 B = 8058.513512 C = 8467.425665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.044 4.044 5 C -0.162 4.162 6 C -0.078 4.078 7 C -0.211 4.211 8 C 0.144 3.856 9 O -0.307 6.307 10 C 0.066 3.934 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.230 4.230 16 H 0.080 0.920 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.118 3.882 24 C -0.158 4.158 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.253 0.747 40 H 0.043 0.957 41 H 0.029 0.971 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.139 16.289 -10.783 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.044 4.044 5 C -0.180 4.180 6 C -0.096 4.096 7 C -0.230 4.230 8 C 0.098 3.902 9 O -0.220 6.220 10 C 0.009 3.991 11 H 0.097 0.903 12 C -0.173 4.173 13 C 0.054 3.946 14 N -0.331 5.331 15 C -0.358 4.358 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C -0.008 4.008 24 C -0.176 4.176 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.984 16.017 -10.800 20.542 hybrid contribution -0.211 -0.592 1.097 1.265 sum -7.196 15.426 -9.703 19.593 Atomic orbital electron populations 1.21849 0.94294 1.02158 1.01765 1.20115 0.95953 0.95966 0.95417 1.21846 1.01327 0.95073 1.01773 1.19555 0.95920 0.94209 0.94695 1.20766 1.03776 1.01645 0.91841 1.20912 0.95802 0.94381 0.98491 1.21461 1.04207 1.00268 0.97015 1.19060 0.90818 0.86722 0.93619 1.86093 1.61569 1.39612 1.34679 1.23835 0.95675 0.95201 0.84363 0.90281 1.23016 0.95351 0.97385 1.01538 1.21209 0.87369 0.95863 0.90199 1.44355 1.07010 1.50067 1.31632 1.19114 0.95821 1.18526 1.02324 0.90250 1.24822 0.95850 1.00075 0.99627 1.69956 1.03685 1.41710 1.41573 0.86009 0.77745 0.79620 0.82174 1.20448 1.21664 1.21678 1.21975 0.93214 0.91422 0.94213 1.20279 1.02933 0.97241 0.97185 0.92514 0.92409 0.92407 0.90435 0.92414 0.92481 0.92512 0.86455 0.86072 0.84937 0.91137 0.91354 0.93049 0.93215 0.93674 0.93886 0.95285 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.01 37.16 0.33 -0.83 16 2 C -0.06 -0.51 3.09 -91.78 -0.28 -0.80 16 3 C -0.14 -1.13 9.01 37.15 0.33 -0.80 16 4 C -0.04 -0.52 4.78 -104.65 -0.50 -1.02 16 5 C -0.16 -1.89 8.71 -39.56 -0.34 -2.24 16 6 C -0.08 -1.00 10.04 -39.61 -0.40 -1.40 16 7 C -0.21 -3.20 8.72 -39.43 -0.34 -3.54 16 8 C 0.14 2.30 6.64 -39.22 -0.26 2.04 16 9 O -0.31 -5.48 9.96 -19.43 -0.19 -5.67 16 10 C 0.07 1.25 2.82 -24.58 -0.07 1.18 16 11 H 0.08 1.45 6.61 -51.93 -0.34 1.10 16 12 C -0.13 -2.61 6.69 -24.90 -0.17 -2.78 16 13 C 0.18 4.34 5.37 -3.07 -0.02 4.33 16 14 N -0.60 -15.62 3.39 -170.08 -0.58 -16.19 16 15 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 16 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 17 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 18 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C 0.12 2.57 6.60 -2.53 -0.02 2.55 16 24 C -0.16 -2.19 9.61 -39.43 -0.38 -2.57 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 28 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 29 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.12 1.12 7.09 -52.49 -0.37 0.74 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.13 2.10 5.31 -52.49 -0.28 1.82 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 1.36 7.38 -51.93 -0.38 0.97 16 38 H 0.05 1.33 7.51 -51.92 -0.39 0.94 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.04 0.90 7.24 -51.93 -0.38 0.52 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.13 1.60 7.94 -52.48 -0.42 1.18 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -30.06 334.31 -9.21 -39.27 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.66 Total: -0.34 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.36 Total: -12.77 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.01 Total: -42.57 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.19 Total: -5.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.06 -9.21 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225240239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.415 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds