Wall clock time and date at job start Mon Mar 30 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47350 * 2 1 4 4 C 1.50696 * 109.47523 * 120.00639 * 2 1 3 5 5 C 1.38293 * 119.97000 * 299.99541 * 4 2 1 6 6 C 1.38244 * 120.11156 * 179.97438 * 5 4 2 7 7 C 1.38163 * 120.05754 * 0.04861 * 6 5 4 8 8 C 1.38714 * 119.94196 * 359.97211 * 7 6 5 9 9 O 1.35900 * 120.05384 * 179.97438 * 8 7 6 10 10 C 1.42902 * 117.00223 * 354.72032 * 9 8 7 11 11 H 1.09004 * 110.88475 * 321.57595 * 10 9 8 12 12 C 1.55158 * 111.00744 * 197.64823 * 10 9 8 13 13 C 1.54319 * 102.94069 * 206.42464 * 12 10 9 14 14 N 1.47017 * 107.27440 * 22.19396 * 13 12 10 15 15 C 1.36938 * 125.64775 * 181.02775 * 14 13 12 16 16 H 1.08009 * 119.99704 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00141 * 0.03226 * 15 14 13 18 18 N 1.31619 * 119.99855 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00026 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47164 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47419 * 120.00335 * 19 17 15 22 22 H 1.48502 * 109.47255 * 240.00273 * 19 17 15 23 23 C 1.47425 * 108.70312 * 1.05416 * 14 13 12 24 24 C 1.38121 * 119.97644 * 119.71538 * 4 2 1 25 25 H 1.08994 * 109.47725 * 59.99533 * 1 2 3 26 26 H 1.08996 * 109.47091 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46568 * 299.99716 * 1 2 3 28 28 H 1.09004 * 109.46568 * 240.00284 * 2 1 3 29 29 H 1.09004 * 109.47053 * 60.00581 * 3 2 1 30 30 H 1.09000 * 109.47157 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47506 * 300.00180 * 3 2 1 32 32 H 1.08000 * 119.93956 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.96630 * 180.02562 * 6 5 4 34 34 H 1.08001 * 120.03170 * 179.97438 * 7 6 5 35 35 H 1.09002 * 110.71543 * 324.78622 * 12 10 9 36 36 H 1.08995 * 110.71777 * 88.06069 * 12 10 9 37 37 H 1.09003 * 109.87987 * 262.76979 * 13 12 10 38 38 H 1.09008 * 109.87836 * 141.61315 * 13 12 10 39 39 H 0.97002 * 119.99748 * 179.97438 * 18 17 15 40 40 H 1.08995 * 110.37090 * 217.03473 * 23 14 13 41 41 H 1.09003 * 110.36140 * 94.71348 * 23 14 13 42 42 H 1.08007 * 120.02740 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 1.6981 -0.2376 2.4861 6 6 2.1569 -0.8874 3.6168 7 6 2.9518 -2.0108 3.4946 8 6 3.2889 -2.4869 2.2361 9 8 4.0711 -3.5915 2.1133 10 6 4.6064 -4.1446 3.3173 11 1 4.9002 -3.3560 4.0102 12 6 5.7977 -5.0910 3.0131 13 6 5.7834 -6.0612 4.2131 14 7 4.4275 -6.0337 4.7807 15 6 4.0052 -6.7428 5.8733 16 1 2.9838 -6.6539 6.2130 17 6 4.8898 -7.5759 6.5445 18 7 6.1346 -7.6837 6.1308 19 14 4.3135 -8.5437 8.0346 20 1 2.8809 -8.2493 8.2923 21 1 4.4811 -9.9965 7.7764 22 1 5.1200 -8.1553 9.2194 23 6 3.5976 -5.1168 3.9782 24 6 2.8216 -1.8368 1.1029 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.6768 1.9562 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.0774 0.6409 2.5837 33 1 1.8941 -0.5163 4.5963 34 1 3.3104 -2.5179 4.3782 35 1 5.6336 -5.6296 2.0798 36 1 6.7338 -4.5338 2.9787 37 1 6.5055 -5.7352 4.9618 38 1 6.0244 -7.0698 3.8772 39 1 6.7529 -8.2656 6.6001 40 1 2.9079 -4.5691 4.6203 41 1 3.0493 -5.6704 3.2159 42 1 3.0791 -2.2082 0.1219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225240239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:38 Heat of formation + Delta-G solvation = -15.215457 kcal Electronic energy + Delta-G solvation = -21014.840804 eV Core-core repulsion = 17959.707244 eV Total energy + Delta-G solvation = -3055.133560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.36795 -39.62808 -37.96659 -35.77822 -34.31950 -31.74472 -31.12831 -30.04268 -29.09419 -27.92266 -26.56679 -24.32425 -23.53858 -22.35411 -21.92910 -20.69401 -19.04259 -18.75623 -17.18266 -16.88688 -16.69811 -16.49365 -15.94834 -15.60552 -15.26285 -14.84226 -14.45945 -14.39160 -14.22253 -14.00383 -13.94270 -13.58802 -13.10773 -12.95111 -12.88188 -12.79458 -12.67752 -12.37058 -12.19820 -12.02564 -12.00677 -11.87505 -11.68227 -11.60163 -11.45546 -11.40903 -10.76949 -9.75045 -9.11423 -8.98784 -7.90424 -5.28187 0.38974 0.52070 1.45238 1.46384 1.56960 2.11773 2.47972 2.81974 3.28661 3.57983 3.64295 3.76359 3.89468 3.93474 3.97988 4.06189 4.23813 4.36741 4.39137 4.42183 4.52787 4.58280 4.62185 4.74265 4.78491 4.87443 4.90627 4.97643 5.04789 5.05977 5.10382 5.24301 5.34530 5.38234 5.44276 5.44872 5.54638 5.57133 5.66580 5.71293 5.91802 6.11649 6.49112 7.03165 7.67473 8.31607 9.20263 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036402 B = 0.003474 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.994392 B = 8058.513512 C = 8467.425665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.040 4.040 5 C -0.154 4.154 6 C -0.081 4.081 7 C -0.227 4.227 8 C 0.114 3.886 9 O -0.315 6.315 10 C 0.086 3.914 11 H 0.085 0.915 12 C -0.122 4.122 13 C 0.186 3.814 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.083 0.917 17 C -0.062 4.062 18 N -0.949 5.949 19 Si 0.983 3.017 20 H -0.266 1.266 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.119 3.881 24 C -0.166 4.166 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.024 0.976 38 H 0.017 0.983 39 H 0.250 0.750 40 H 0.048 0.952 41 H 0.022 0.978 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 18.445 -11.391 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.198 4.198 4 C -0.040 4.040 5 C -0.172 4.172 6 C -0.099 4.099 7 C -0.246 4.246 8 C 0.069 3.931 9 O -0.228 6.228 10 C 0.029 3.971 11 H 0.103 0.897 12 C -0.160 4.160 13 C 0.061 3.939 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.100 0.900 17 C -0.256 4.256 18 N -0.598 5.598 19 Si 0.811 3.189 20 H -0.190 1.190 21 H -0.218 1.218 22 H -0.215 1.215 23 C -0.007 4.007 24 C -0.185 4.185 25 H 0.092 0.908 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.160 0.840 34 H 0.137 0.863 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.567 18.202 -11.430 23.138 hybrid contribution 0.179 -1.160 1.216 1.691 sum -8.388 17.042 -10.214 21.566 Atomic orbital electron populations 1.21846 0.93264 1.01869 1.02926 1.20194 0.96702 0.96489 0.94062 1.21838 1.00873 0.94173 1.02913 1.19936 0.94605 0.93310 0.96159 1.21126 1.02940 1.01923 0.91236 1.21205 0.94998 0.93555 1.00123 1.21465 1.05458 1.01442 0.96217 1.19346 0.92044 0.86940 0.94809 1.86050 1.62454 1.40793 1.33524 1.23435 0.94183 0.94638 0.84852 0.89699 1.22847 0.97066 0.96699 0.99370 1.20954 0.86368 0.95352 0.91191 1.44634 1.08114 1.50673 1.31699 1.19486 0.96163 1.18918 1.03128 0.89951 1.25696 0.96045 1.01239 1.02580 1.70164 1.04657 1.42274 1.42694 0.84950 0.77874 0.77674 0.78437 1.19029 1.21761 1.21528 1.22039 0.93601 0.91311 0.93756 1.20508 1.03249 0.97835 0.96875 0.90789 0.93427 0.91888 0.90181 0.91888 0.93220 0.90830 0.83635 0.83968 0.86282 0.90376 0.88722 0.95749 0.96497 0.94093 0.93415 0.96041 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.01 71.98 0.65 -1.22 16 2 C -0.06 -0.87 3.09 -11.54 -0.04 -0.90 16 3 C -0.14 -1.77 9.01 71.98 0.65 -1.12 16 4 C -0.04 -0.86 4.78 -19.88 -0.10 -0.95 16 5 C -0.15 -3.16 8.71 22.28 0.19 -2.97 16 6 C -0.08 -1.92 10.04 22.25 0.22 -1.70 16 7 C -0.23 -6.75 8.72 22.37 0.20 -6.56 16 8 C 0.11 3.58 6.64 22.51 0.15 3.73 16 9 O -0.31 -11.17 9.96 -92.43 -0.92 -12.09 16 10 C 0.09 3.25 2.82 31.99 0.09 3.34 16 11 H 0.09 3.11 6.61 -2.38 -0.02 3.09 16 12 C -0.12 -4.73 6.69 31.78 0.21 -4.51 16 13 C 0.19 9.40 5.37 86.73 0.47 9.87 16 14 N -0.62 -33.17 3.39 -692.00 -2.35 -35.52 16 15 C -0.25 -14.21 10.28 84.03 0.86 -13.35 16 16 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 17 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 18 N -0.95 -57.17 10.31 21.65 0.22 -56.95 16 19 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 C 0.12 5.24 6.60 86.85 0.57 5.81 16 24 C -0.17 -4.42 9.61 22.37 0.21 -4.20 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.76 7.39 -2.39 -0.02 0.75 16 28 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 29 H 0.06 0.73 7.39 -2.39 -0.02 0.71 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.15 2.17 7.09 -2.91 -0.02 2.14 16 33 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.12 3.79 5.31 -2.91 -0.02 3.78 16 35 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 37 H 0.02 1.34 7.38 -2.39 -0.02 1.32 16 38 H 0.02 0.94 7.51 -2.38 -0.02 0.93 16 39 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.05 2.03 7.24 -2.39 -0.02 2.02 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.13 3.23 7.94 -2.91 -0.02 3.21 16 Total: -1.00 -65.85 334.31 4.78 -61.07 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.99 Total: 13.38 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.81 Total: -17.85 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -2.13 Total: -92.47 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.92 Total: -12.09 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -65.85 4.78 -61.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225240239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.858 kcal (2) G-P(sol) polarization free energy of solvation -65.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds