Wall clock time and date at job start Mon Mar 30 2020 02:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.02751 * 265.32030 * 4 3 2 6 6 C 1.38245 * 120.05705 * 180.30023 * 5 4 3 7 7 C 1.38284 * 120.10970 * 359.67565 * 6 5 4 8 8 C 1.38123 * 120.05655 * 0.02562 * 7 6 5 9 9 C 1.38704 * 120.03098 * 85.00251 * 4 3 2 10 10 O 1.35905 * 120.05408 * 359.97438 * 9 4 3 11 11 C 1.42904 * 116.99664 * 173.67436 * 10 9 4 12 12 C 1.53515 * 114.16817 * 201.77448 * 11 10 9 13 13 N 1.47473 * 87.93290 * 220.14001 * 12 11 10 14 14 C 1.46902 * 111.00092 * 138.70427 * 13 12 11 15 15 C 1.50703 * 109.47029 * 169.99934 * 14 13 12 16 16 H 1.07991 * 120.00373 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99651 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47149 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46955 * 300.00300 * 19 17 15 22 22 H 1.48495 * 109.47051 * 60.00194 * 19 17 15 23 23 C 1.47480 * 87.83674 * 27.00930 * 13 12 11 24 24 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47233 * 300.00120 * 1 2 3 26 26 H 1.09000 * 109.47697 * 59.99792 * 1 2 3 27 27 H 1.09001 * 109.47298 * 240.00400 * 2 1 3 28 28 H 1.08997 * 109.47311 * 119.99871 * 2 1 3 29 29 H 1.09003 * 109.47415 * 60.00191 * 3 2 1 30 30 H 1.09005 * 109.47155 * 299.99921 * 3 2 1 31 31 H 1.08005 * 119.97323 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.94299 * 179.70343 * 6 5 4 33 33 H 1.08005 * 119.97397 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.02944 * 180.02562 * 8 7 6 35 35 H 1.08998 * 113.26281 * 334.72480 * 11 10 9 36 36 H 1.08999 * 113.47712 * 105.37156 * 12 11 10 37 37 H 1.09004 * 113.52902 * 334.91999 * 12 11 10 38 38 H 1.08999 * 109.47026 * 50.00079 * 14 13 12 39 39 H 1.09004 * 109.46911 * 289.99666 * 14 13 12 40 40 H 0.97000 * 119.99906 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.47438 * 87.75649 * 23 13 12 42 42 H 1.08997 * 113.47675 * 218.21975 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5399 1.1913 6 6 5.6213 1.5462 1.1910 7 6 6.3152 1.4483 -0.0012 8 6 5.6282 1.3445 -1.1949 9 6 4.2406 1.3381 -1.1972 10 8 3.5623 1.2351 -2.3704 11 6 4.3352 1.2711 -3.5719 12 6 3.5384 1.6765 -4.8198 13 7 4.2864 0.6478 -5.5662 14 6 3.4026 -0.0844 -6.4830 15 6 4.2321 -0.9484 -7.3976 16 1 5.3082 -0.9535 -7.3066 17 6 3.6171 -1.7333 -8.3499 18 7 2.3067 -1.7275 -8.4604 19 14 4.6453 -2.8048 -9.4830 20 1 3.7518 -3.5449 -10.4099 21 1 5.5720 -1.9493 -10.2671 22 1 5.4295 -3.7715 -8.6733 23 6 4.4468 -0.0793 -4.2932 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6993 1.6165 2.1238 32 1 6.1603 1.6273 2.1234 33 1 7.3952 1.4531 0.0011 34 1 6.1705 1.2677 -2.1257 35 1 5.2837 1.7959 -3.4580 36 1 3.7449 2.6928 -5.1556 37 1 2.4716 1.4670 -4.7420 38 1 2.8269 0.6254 -7.0771 39 1 2.7224 -0.7126 -5.9078 40 1 1.8740 -2.2794 -9.1306 41 1 3.6225 -0.7581 -4.0740 42 1 5.4231 -0.5513 -4.1827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227171692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:00 Heat of formation + Delta-G solvation = 11.636160 kcal Electronic energy + Delta-G solvation = -20938.560907 eV Core-core repulsion = 17884.591720 eV Total energy + Delta-G solvation = -3053.969187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.52547 -39.05797 -36.66614 -35.10612 -32.89775 -31.16051 -30.07232 -29.10056 -26.37014 -25.63194 -25.27281 -23.00241 -22.22829 -21.18003 -20.89770 -19.37481 -18.11567 -16.50380 -16.07308 -15.80182 -15.36484 -14.94264 -14.88491 -14.48654 -14.17568 -13.76878 -13.72825 -13.58069 -13.02382 -12.48231 -12.31790 -12.17730 -12.08999 -11.99648 -11.81277 -11.48757 -11.28482 -11.18719 -10.96433 -10.69374 -10.60572 -10.56248 -10.29161 -9.99231 -9.81747 -9.28350 -8.85531 -8.46846 -8.06508 -8.00194 -6.06268 -4.08045 1.29487 1.44738 3.31988 3.32754 3.36125 3.39893 3.72992 4.40589 4.63946 4.71135 4.78804 4.84155 4.98570 5.03528 5.08461 5.15278 5.24447 5.29051 5.31286 5.49362 5.54112 5.63329 5.77912 5.81127 5.85759 5.92709 5.95454 6.06562 6.13700 6.14974 6.22121 6.26830 6.31265 6.39764 6.48143 6.48613 6.54392 6.82605 7.12328 7.58076 7.59517 7.78997 8.03993 8.38807 8.98647 9.56095 11.04808 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.003847 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.325837 B = 7275.827097 C = 8058.990525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.207 4.207 9 C 0.141 3.859 10 O -0.297 6.297 11 C 0.042 3.958 12 C 0.004 3.996 13 N -0.460 5.460 14 C 0.162 3.838 15 C -0.508 4.508 16 H 0.063 0.937 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.003 4.003 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.031 0.969 39 H 0.006 0.994 40 H 0.263 0.737 41 H 0.074 0.926 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.909 6.891 19.792 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.182 4.182 7 C -0.103 4.103 8 C -0.226 4.226 9 C 0.095 3.905 10 O -0.210 6.210 11 C -0.015 4.015 12 C -0.125 4.125 13 N -0.185 5.185 14 C 0.036 3.964 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.728 3.272 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.132 4.132 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.099 6.948 19.187 20.514 hybrid contribution -0.006 -0.944 -0.404 1.027 sum 2.093 6.004 18.783 19.830 Atomic orbital electron populations 1.21769 0.95834 1.01608 1.01648 1.21476 0.95545 0.96197 1.02295 1.20436 0.90168 0.97504 1.02597 1.19285 0.96148 1.05959 0.90611 1.20836 0.94060 0.98640 0.96606 1.20976 0.94207 1.05067 0.97951 1.20917 0.99657 0.97792 0.91953 1.21355 0.93304 1.08225 0.99672 1.18912 0.90441 0.94973 0.86213 1.86188 1.36086 1.86580 1.12106 1.24510 0.96000 0.99728 0.81231 1.24018 0.98247 0.99636 0.90592 1.69017 1.35927 1.07741 1.05811 1.20278 0.91437 0.93108 0.91599 1.21041 0.93737 1.23703 1.16156 0.91859 1.25002 0.95003 0.97104 0.97519 1.69943 1.08254 1.40563 1.35101 0.86515 0.79896 0.80351 0.80403 1.21289 1.20106 1.20225 1.24269 1.02742 0.95199 0.91020 0.92792 0.93065 0.92513 0.91444 0.92372 0.91557 0.90602 0.85832 0.86287 0.86072 0.85058 0.87598 0.89786 0.90927 0.95069 0.97603 0.92780 0.90772 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.15 0.37 -1.15 16 2 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 3 C -0.07 -0.79 5.07 -27.88 -0.14 -0.93 16 4 C -0.12 -1.49 5.15 -104.47 -0.54 -2.03 16 5 C -0.08 -0.89 9.68 -39.60 -0.38 -1.28 16 6 C -0.16 -1.69 10.04 -39.56 -0.40 -2.08 16 7 C -0.09 -0.94 10.04 -39.61 -0.40 -1.34 16 8 C -0.21 -2.67 9.02 -39.43 -0.36 -3.02 16 9 C 0.14 1.98 6.65 -39.22 -0.26 1.72 16 10 O -0.30 -4.66 9.33 -19.44 -0.18 -4.84 16 11 C 0.04 0.67 4.00 -26.20 -0.10 0.56 16 12 C 0.00 0.08 7.52 -7.55 -0.06 0.02 16 13 N -0.46 -9.99 6.32 -246.13 -1.55 -11.54 16 14 C 0.16 4.24 4.57 -4.97 -0.02 4.21 16 15 C -0.51 -14.51 9.39 -34.44 -0.32 -14.84 16 16 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 19 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.00 -0.06 7.56 -7.55 -0.06 -0.11 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 31 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.13 1.62 5.93 -52.49 -0.31 1.31 16 35 H 0.11 1.52 6.00 -51.93 -0.31 1.21 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 38 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.01 0.17 7.30 -51.93 -0.38 -0.21 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 1.49 7.42 -51.93 -0.39 1.11 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -30.33 345.44 -10.55 -40.87 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.81 Total: -0.12 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.93 Total: -20.26 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.82 Total: -37.64 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.18 Total: -4.84 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.33 -10.55 -40.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227171692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.511 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds