Wall clock time and date at job start Mon Mar 30 2020 02:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 C 1.50702 * 109.47146 * 180.02562 * 3 2 1 5 5 C 1.38169 * 120.02751 * 265.32030 * 4 3 2 6 6 C 1.38245 * 120.05705 * 180.30023 * 5 4 3 7 7 C 1.38284 * 120.10970 * 359.67565 * 6 5 4 8 8 C 1.38123 * 120.05655 * 0.02562 * 7 6 5 9 9 C 1.38704 * 120.03098 * 85.00251 * 4 3 2 10 10 O 1.35905 * 120.05408 * 359.97438 * 9 4 3 11 11 C 1.42904 * 116.99664 * 173.67436 * 10 9 4 12 12 C 1.53515 * 114.16817 * 201.77448 * 11 10 9 13 13 N 1.47473 * 87.93290 * 220.14001 * 12 11 10 14 14 C 1.46902 * 111.00092 * 138.70427 * 13 12 11 15 15 C 1.50703 * 109.47029 * 169.99934 * 14 13 12 16 16 H 1.07991 * 120.00373 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99651 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00026 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99834 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47149 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.46955 * 300.00300 * 19 17 15 22 22 H 1.48495 * 109.47051 * 60.00194 * 19 17 15 23 23 C 1.47480 * 87.83674 * 27.00930 * 13 12 11 24 24 H 1.09005 * 109.47085 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47233 * 300.00120 * 1 2 3 26 26 H 1.09000 * 109.47697 * 59.99792 * 1 2 3 27 27 H 1.09001 * 109.47298 * 240.00400 * 2 1 3 28 28 H 1.08997 * 109.47311 * 119.99871 * 2 1 3 29 29 H 1.09003 * 109.47415 * 60.00191 * 3 2 1 30 30 H 1.09005 * 109.47155 * 299.99921 * 3 2 1 31 31 H 1.08005 * 119.97323 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.94299 * 179.70343 * 6 5 4 33 33 H 1.08005 * 119.97397 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.02944 * 180.02562 * 8 7 6 35 35 H 1.08998 * 113.26281 * 334.72480 * 11 10 9 36 36 H 1.08999 * 113.47712 * 105.37156 * 12 11 10 37 37 H 1.09004 * 113.52902 * 334.91999 * 12 11 10 38 38 H 1.08999 * 109.47026 * 50.00079 * 14 13 12 39 39 H 1.09004 * 109.46911 * 289.99666 * 14 13 12 40 40 H 0.97000 * 119.99906 * 179.97438 * 18 17 15 41 41 H 1.09007 * 113.47438 * 87.75649 * 23 13 12 42 42 H 1.08997 * 113.47675 * 218.21975 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2389 1.5399 1.1913 6 6 5.6213 1.5462 1.1910 7 6 6.3152 1.4483 -0.0012 8 6 5.6282 1.3445 -1.1949 9 6 4.2406 1.3381 -1.1972 10 8 3.5623 1.2351 -2.3704 11 6 4.3352 1.2711 -3.5719 12 6 3.5384 1.6765 -4.8198 13 7 4.2864 0.6478 -5.5662 14 6 3.4026 -0.0844 -6.4830 15 6 4.2321 -0.9484 -7.3976 16 1 5.3082 -0.9535 -7.3066 17 6 3.6171 -1.7333 -8.3499 18 7 2.3067 -1.7275 -8.4604 19 14 4.6453 -2.8048 -9.4830 20 1 3.7518 -3.5449 -10.4099 21 1 5.5720 -1.9493 -10.2671 22 1 5.4295 -3.7715 -8.6733 23 6 4.4468 -0.0793 -4.2932 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.6993 1.6165 2.1238 32 1 6.1603 1.6273 2.1234 33 1 7.3952 1.4531 0.0011 34 1 6.1705 1.2677 -2.1257 35 1 5.2837 1.7959 -3.4580 36 1 3.7449 2.6928 -5.1556 37 1 2.4716 1.4670 -4.7420 38 1 2.8269 0.6254 -7.0771 39 1 2.7224 -0.7126 -5.9078 40 1 1.8740 -2.2794 -9.1306 41 1 3.6225 -0.7581 -4.0740 42 1 5.4231 -0.5513 -4.1827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227171692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:59 Heat of formation + Delta-G solvation = -6.550774 kcal Electronic energy + Delta-G solvation = -20939.349552 eV Core-core repulsion = 17884.591720 eV Total energy + Delta-G solvation = -3054.757831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.75469 -40.31808 -37.85879 -35.98668 -35.04935 -32.07111 -31.41213 -30.56671 -27.44668 -27.20913 -26.86907 -24.44579 -23.14166 -22.71349 -21.84033 -20.78152 -19.25723 -18.54156 -17.38204 -16.81478 -16.68495 -16.44599 -16.27247 -15.76941 -15.22023 -15.05067 -15.02670 -14.64765 -14.21833 -14.04519 -13.85533 -13.74274 -13.21566 -13.09431 -12.97490 -12.85243 -12.67303 -12.48465 -12.27729 -12.13904 -12.04639 -11.76570 -11.59873 -11.49610 -11.33823 -11.23193 -10.64942 -9.85257 -9.73261 -9.03235 -8.26146 -6.37384 0.41733 0.52959 1.38766 1.42465 1.50675 2.13901 2.38274 2.82914 3.06022 3.22744 3.33112 3.74684 3.84269 3.90870 4.08969 4.14351 4.22939 4.28407 4.39478 4.39926 4.50080 4.55054 4.58884 4.65546 4.72843 4.78646 4.80495 4.83622 4.91746 5.00200 5.01271 5.08799 5.26758 5.30556 5.42546 5.49418 5.50873 5.61030 5.65411 5.68068 5.94355 5.98935 6.31805 6.50396 6.75908 7.32300 8.85206 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021011 B = 0.003847 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.325837 B = 7275.827097 C = 8058.990525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.067 4.067 4 C -0.131 4.131 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.090 4.090 8 C -0.219 4.219 9 C 0.107 3.893 10 O -0.311 6.311 11 C 0.072 3.928 12 C 0.001 3.999 13 N -0.473 5.473 14 C 0.177 3.823 15 C -0.531 4.531 16 H 0.062 0.938 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.973 3.027 20 H -0.280 1.280 21 H -0.266 1.266 22 H -0.267 1.267 23 C -0.007 4.007 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.006 0.994 39 H -0.021 1.021 40 H 0.266 0.734 41 H 0.054 0.946 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 7.229 21.811 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.104 4.104 4 C -0.131 4.131 5 C -0.102 4.102 6 C -0.176 4.176 7 C -0.108 4.108 8 C -0.238 4.238 9 C 0.062 3.938 10 O -0.224 6.224 11 C 0.015 3.985 12 C -0.128 4.128 13 N -0.197 5.197 14 C 0.050 3.950 15 C -0.569 4.569 16 H 0.080 0.920 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.797 3.203 20 H -0.205 1.205 21 H -0.191 1.191 22 H -0.192 1.192 23 C -0.137 4.137 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.109 0.891 30 H 0.076 0.924 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.024 0.976 39 H -0.004 1.004 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.730 7.300 21.230 22.758 hybrid contribution -0.510 -1.010 -0.877 1.432 sum 3.220 6.289 20.354 21.545 Atomic orbital electron populations 1.21757 0.94897 1.01904 1.02105 1.21432 0.96375 0.96153 1.01248 1.20429 0.89832 0.97324 1.02847 1.19555 0.96733 1.06038 0.90815 1.21200 0.94595 0.97507 0.96849 1.21399 0.94242 1.03013 0.98902 1.21258 1.00987 0.97002 0.91531 1.21488 0.92877 1.08726 1.00679 1.19243 0.91309 0.97361 0.85905 1.86154 1.36417 1.87272 1.12545 1.24129 0.96225 0.96981 0.81120 1.24060 0.97672 0.99601 0.91441 1.68896 1.35325 1.08677 1.06781 1.19930 0.91184 0.92194 0.91697 1.21379 0.93879 1.24572 1.17054 0.92024 1.25963 0.96232 0.98366 0.99063 1.70071 1.10063 1.41382 1.35875 0.85378 0.78268 0.78454 0.78188 1.20536 1.19118 1.19241 1.24266 1.02332 0.96626 0.90428 0.92618 0.91048 0.93576 0.94548 0.91271 0.89123 0.92441 0.83075 0.83250 0.83733 0.85087 0.85324 0.87675 0.92065 0.97632 1.00353 0.92482 0.92798 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.91 71.98 0.71 -2.20 16 2 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 3 C -0.07 -1.46 5.07 29.85 0.15 -1.31 16 4 C -0.13 -3.11 5.15 -19.77 -0.10 -3.21 16 5 C -0.08 -1.54 9.68 22.25 0.22 -1.32 16 6 C -0.16 -2.68 10.04 22.28 0.22 -2.46 16 7 C -0.09 -1.74 10.04 22.25 0.22 -1.52 16 8 C -0.22 -5.36 9.02 22.37 0.20 -5.16 16 9 C 0.11 2.96 6.65 22.50 0.15 3.11 16 10 O -0.31 -9.96 9.33 -92.48 -0.86 -10.82 16 11 C 0.07 2.33 4.00 30.94 0.12 2.45 16 12 C 0.00 0.04 7.52 83.57 0.63 0.67 16 13 N -0.47 -21.18 6.32 -933.01 -5.89 -27.07 16 14 C 0.18 9.75 4.57 85.56 0.39 10.14 16 15 C -0.53 -31.14 9.39 25.60 0.24 -30.90 16 16 H 0.06 3.55 7.81 -2.92 -0.02 3.53 16 17 C 0.00 0.12 5.46 84.66 0.46 0.58 16 18 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 19 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 C -0.01 -0.28 7.56 83.57 0.63 0.35 16 24 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.09 1.50 8.06 -2.39 -0.02 1.48 16 30 H 0.06 1.45 7.69 -2.38 -0.02 1.43 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 32 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.13 3.09 5.93 -2.91 -0.02 3.07 16 35 H 0.13 3.57 6.00 -2.39 -0.01 3.55 16 36 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.06 2.39 7.91 -2.38 -0.02 2.37 16 38 H 0.01 0.33 8.08 -2.39 -0.02 0.31 16 39 H -0.02 -1.26 7.30 -2.39 -0.02 -1.28 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.05 2.32 7.42 -2.38 -0.02 2.30 16 42 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -67.21 345.44 0.97 -66.24 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.98 Total: 14.71 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 4.44 Total: -33.15 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -5.61 Total: -83.92 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.86 Total: -10.82 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.21 0.97 -66.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227171692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.688 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds