Wall clock time and date at job start Mon Mar 30 2020 02:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47355 * 2 1 4 4 C 1.50706 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.38168 * 120.02810 * 264.98374 * 4 3 2 6 6 C 1.38241 * 120.05413 * 180.02562 * 5 4 3 7 7 C 1.38287 * 120.11537 * 359.96509 * 6 5 4 8 8 C 1.38123 * 120.05245 * 359.77299 * 7 6 5 9 9 C 1.38707 * 120.02581 * 84.99803 * 4 3 2 10 10 O 1.35898 * 120.05980 * 359.97438 * 9 4 3 11 11 C 1.42897 * 117.00112 * 185.75586 * 10 9 4 12 12 H 1.08995 * 110.88945 * 37.56415 * 11 10 9 13 13 C 1.55407 * 111.03625 * 161.36730 * 11 10 9 14 14 C 1.54328 * 102.82742 * 153.47134 * 13 11 10 15 15 N 1.47029 * 107.39967 * 337.97446 * 14 13 11 16 16 C 1.36941 * 125.64506 * 178.82589 * 15 14 13 17 17 H 1.07995 * 119.99849 * 174.93388 * 16 15 14 18 18 C 1.38814 * 119.99792 * 354.94429 * 16 15 14 19 19 N 1.31614 * 120.00263 * 354.72490 * 18 16 15 20 20 Si 1.86801 * 119.99423 * 174.72902 * 18 16 15 21 21 H 1.48497 * 109.47279 * 94.99759 * 20 18 16 22 22 H 1.48508 * 109.46867 * 214.99416 * 20 18 16 23 23 H 1.48494 * 109.47201 * 334.99348 * 20 18 16 24 24 C 1.47421 * 108.70233 * 358.86750 * 15 14 13 25 25 H 1.09002 * 109.46711 * 59.99931 * 1 2 3 26 26 H 1.08999 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47104 * 299.99969 * 1 2 3 28 28 H 1.09001 * 109.47521 * 239.99555 * 2 1 3 29 29 H 1.09002 * 109.46711 * 120.00069 * 2 1 3 30 30 H 1.09003 * 109.47098 * 59.99884 * 3 2 1 31 31 H 1.09002 * 109.47267 * 299.99728 * 3 2 1 32 32 H 1.08001 * 119.97017 * 0.03044 * 5 4 3 33 33 H 1.08006 * 119.94240 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.97523 * 180.02562 * 7 6 5 35 35 H 1.07993 * 120.02924 * 180.26955 * 8 7 6 36 36 H 1.08997 * 110.69355 * 35.18245 * 13 11 10 37 37 H 1.08999 * 110.85037 * 271.82867 * 13 11 10 38 38 H 1.08995 * 109.88090 * 218.48440 * 14 13 11 39 39 H 1.08996 * 109.88416 * 97.47101 * 14 13 11 40 40 H 0.97002 * 119.99841 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.36722 * 142.97428 * 24 15 14 42 42 H 1.09010 * 110.36316 * 265.17216 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.2380 1.5472 1.1926 6 6 5.6204 1.5478 1.1937 7 6 6.3153 1.4429 0.0027 8 6 5.6293 1.3325 -1.1910 9 6 4.2417 1.3375 -1.1954 10 8 3.5644 1.2341 -2.3691 11 6 4.3395 1.0027 -3.5471 12 1 5.1710 0.3294 -3.3392 13 6 3.4533 0.4511 -4.6984 14 6 4.2112 0.9075 -5.9629 15 7 5.0581 2.0470 -5.5807 16 6 5.9065 2.7257 -6.4142 17 1 6.4264 3.6027 -6.0579 18 6 6.0981 2.2866 -7.7170 19 7 5.5471 1.1613 -8.1200 20 14 7.1383 3.2927 -8.8982 21 1 8.5304 2.7759 -8.8954 22 1 6.5739 3.1874 -10.2678 23 1 7.1374 4.7148 -8.4705 24 6 4.8432 2.3371 -4.1514 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.6976 1.6286 2.1241 33 1 6.1587 1.6294 2.1265 34 1 7.3953 1.4432 0.0063 35 1 6.1723 1.2462 -2.1204 36 1 2.4580 0.8940 -4.6644 37 1 3.3943 -0.6365 -4.6557 38 1 3.5007 1.2146 -6.7303 39 1 4.8319 0.0934 -6.3371 40 1 5.6813 0.8543 -9.0303 41 1 5.7791 2.6376 -3.6804 42 1 4.0916 3.1175 -4.0315 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227172465.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:43 Heat of formation + Delta-G solvation = -2.016778 kcal Electronic energy + Delta-G solvation = -21372.391035 eV Core-core repulsion = 18317.829812 eV Total energy + Delta-G solvation = -3054.561223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18751 -37.94104 -36.03215 -35.04659 -32.32889 -31.04514 -29.94471 -29.07715 -27.40743 -26.27884 -24.58255 -22.55253 -22.14466 -20.84058 -20.24583 -19.94805 -17.85008 -17.02156 -15.90037 -15.65665 -15.10393 -14.73367 -14.62904 -14.35181 -13.90543 -13.68139 -13.65490 -13.19372 -12.75411 -12.36586 -12.36212 -12.10191 -11.95924 -11.81450 -11.55441 -11.25146 -11.16688 -10.95854 -10.84898 -10.58614 -10.55759 -10.32081 -10.21348 -10.05345 -9.87844 -9.71796 -8.72145 -8.66617 -7.90331 -6.89642 -5.75208 -3.11912 1.42916 1.58967 3.37682 3.42640 3.45006 3.51845 3.87190 4.47027 4.78538 4.88362 5.06867 5.10061 5.16413 5.22474 5.28530 5.35319 5.39703 5.49208 5.59561 5.60872 5.63742 5.70435 5.77133 5.84260 5.87146 5.97870 6.15037 6.19865 6.21750 6.34438 6.35905 6.41972 6.47796 6.56219 6.58662 6.65843 6.69992 6.99334 7.42787 7.57634 7.72754 7.80277 8.20205 9.15397 9.75634 10.40312 11.34794 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.004306 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.998425 B = 6501.711523 C = 7391.682370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.069 4.069 4 C -0.122 4.122 5 C -0.085 4.085 6 C -0.166 4.166 7 C -0.085 4.085 8 C -0.205 4.205 9 C 0.144 3.856 10 O -0.302 6.302 11 C 0.066 3.934 12 H 0.079 0.921 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.601 5.601 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.119 3.881 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.133 0.867 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.042 0.958 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -2.336 17.655 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.123 4.123 5 C -0.103 4.103 6 C -0.184 4.184 7 C -0.103 4.103 8 C -0.224 4.224 9 C 0.097 3.903 10 O -0.214 6.214 11 C 0.009 3.991 12 H 0.097 0.903 13 C -0.171 4.171 14 C 0.049 3.951 15 N -0.329 5.329 16 C -0.359 4.359 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.332 -2.341 17.369 18.319 hybrid contribution 0.901 0.496 -0.749 1.273 sum -4.431 -1.845 16.620 17.299 Atomic orbital electron populations 1.21770 0.95951 1.01408 1.01695 1.21466 0.95387 0.96404 1.02157 1.20415 0.90336 0.97298 1.02586 1.19234 0.95998 1.06537 0.90524 1.20797 0.94048 0.98932 0.96528 1.20949 0.94187 1.05367 0.97880 1.20926 0.99667 0.97728 0.91967 1.21470 0.93420 1.07653 0.99839 1.18904 0.90406 0.94846 0.86101 1.86085 1.36229 1.85712 1.13412 1.23882 0.94317 0.98644 0.82248 0.90339 1.23022 0.99264 0.99999 0.94802 1.21263 0.92357 0.91057 0.90462 1.44337 1.48411 1.36509 1.03634 1.19064 1.18263 1.06417 0.92149 0.90354 1.24820 1.00461 0.97399 0.97576 1.69936 1.48199 1.21246 1.17397 0.86081 0.79642 0.79379 0.80557 1.21562 1.21557 1.20574 1.21978 0.98046 0.93864 0.86916 0.92547 0.92937 0.93040 0.91561 0.92426 0.91651 0.90565 0.85968 0.86404 0.86137 0.84893 0.91260 0.91349 0.94449 0.91712 0.93649 0.93952 0.95295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 3 C -0.07 -0.82 5.07 -27.88 -0.14 -0.96 16 4 C -0.12 -1.66 5.15 -104.47 -0.54 -2.20 16 5 C -0.08 -1.00 9.68 -39.61 -0.38 -1.39 16 6 C -0.17 -1.93 10.04 -39.56 -0.40 -2.33 16 7 C -0.08 -1.10 10.04 -39.61 -0.40 -1.49 16 8 C -0.21 -3.11 8.75 -39.43 -0.35 -3.46 16 9 C 0.14 2.26 6.62 -39.21 -0.26 2.00 16 10 O -0.30 -5.21 9.09 -19.42 -0.18 -5.38 16 11 C 0.07 1.23 2.81 -24.45 -0.07 1.16 16 12 H 0.08 1.44 6.57 -51.93 -0.34 1.10 16 13 C -0.13 -2.54 6.71 -24.76 -0.17 -2.70 16 14 C 0.17 4.19 5.42 -3.06 -0.02 4.18 16 15 N -0.60 -15.49 3.39 -170.07 -0.58 -16.06 16 16 C -0.23 -6.46 10.27 -15.06 -0.15 -6.61 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.17 5.46 -17.43 -0.10 -0.27 16 19 N -0.92 -26.80 10.40 55.49 0.58 -26.22 16 20 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 2.55 6.63 -2.53 -0.02 2.53 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 2.11 5.35 -52.49 -0.28 1.83 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.98 7.90 -51.93 -0.41 0.57 16 39 H 0.06 1.72 6.95 -51.93 -0.36 1.36 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -29.76 337.52 -9.67 -39.43 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.79 Total: 0.22 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.77 Total: -14.05 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.00 Total: -42.29 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.18 Total: -5.38 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.76 -9.67 -39.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227172465.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.412 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds