Wall clock time and date at job start Mon Mar 30 2020 02:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.38172 * 120.02758 * 265.00020 * 4 3 2 6 6 C 1.38245 * 120.05649 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.10793 * 0.02562 * 6 5 4 8 8 C 1.38112 * 120.06124 * 0.02866 * 7 6 5 9 9 C 1.38709 * 120.03030 * 84.72160 * 4 3 2 10 10 O 1.35903 * 120.05239 * 0.02562 * 9 4 3 11 11 C 1.42903 * 116.99698 * 174.30142 * 10 9 4 12 12 H 1.08997 * 110.64068 * 327.02977 * 11 10 9 13 13 C 1.55158 * 110.71506 * 203.89570 * 11 10 9 14 14 C 1.54914 * 101.57776 * 206.13103 * 13 11 10 15 15 N 1.47425 * 104.83339 * 37.01279 * 14 13 11 16 16 C 1.36927 * 125.65164 * 155.90792 * 15 14 13 17 17 H 1.08005 * 120.00168 * 5.18359 * 16 15 14 18 18 C 1.38812 * 120.00306 * 185.18624 * 16 15 14 19 19 N 1.31620 * 119.99804 * 352.93172 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 172.93290 * 18 16 15 21 21 H 1.48502 * 109.47024 * 94.98273 * 20 18 16 22 22 H 1.48498 * 109.47088 * 214.98229 * 20 18 16 23 23 H 1.48503 * 109.47148 * 334.98273 * 20 18 16 24 24 C 1.47027 * 108.70220 * 335.86744 * 15 14 13 25 25 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47549 * 300.00419 * 1 2 3 27 27 H 1.08996 * 109.47035 * 60.00190 * 1 2 3 28 28 H 1.08995 * 109.47408 * 239.99754 * 2 1 3 29 29 H 1.09006 * 109.47080 * 119.99726 * 2 1 3 30 30 H 1.08996 * 109.46982 * 299.99843 * 3 2 1 31 31 H 1.09008 * 109.47054 * 59.99857 * 3 2 1 32 32 H 1.08004 * 119.96972 * 359.97003 * 5 4 3 33 33 H 1.08001 * 119.94476 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96686 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.03148 * 179.97438 * 8 7 6 36 36 H 1.09000 * 111.00660 * 324.20195 * 13 11 10 37 37 H 1.08995 * 111.00955 * 88.02311 * 13 11 10 38 38 H 1.09008 * 110.36390 * 155.84558 * 14 13 11 39 39 H 1.08999 * 110.36735 * 278.16859 * 14 13 11 40 40 H 0.97004 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.88258 * 241.64734 * 24 15 14 42 42 H 1.08994 * 109.88388 * 120.47701 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2379 1.5470 1.1926 6 6 5.6203 1.5465 1.1940 7 6 6.3151 1.4421 0.0028 8 6 5.6292 1.3386 -1.1914 9 6 4.2416 1.3319 -1.1949 10 8 3.5643 1.2238 -2.3681 11 6 4.3395 1.2397 -3.5685 12 1 5.2155 1.8777 -3.4518 13 6 3.4780 1.7051 -4.7721 14 6 4.2077 1.0259 -5.9578 15 7 4.6414 -0.2823 -5.4347 16 6 4.8998 -1.3969 -6.1870 17 1 4.8713 -1.3392 -7.2652 18 6 5.1983 -2.6009 -5.5641 19 7 5.3702 -2.6422 -4.2599 20 14 5.3561 -4.1626 -6.5770 21 1 6.7839 -4.3906 -6.9158 22 1 4.8433 -5.3149 -5.7931 23 1 4.5668 -4.0237 -7.8271 24 6 4.7515 -0.1919 -3.9714 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.6974 1.6291 2.1241 33 1 6.1585 1.6278 2.1267 34 1 7.3951 1.4424 0.0065 35 1 6.1723 1.2575 -2.1214 36 1 2.4542 1.3416 -4.6835 37 1 3.4979 2.7904 -4.8704 38 1 3.5247 0.8915 -6.7967 39 1 5.0709 1.6182 -6.2615 40 1 5.5792 -3.4836 -3.8246 41 1 5.7801 -0.3818 -3.6646 42 1 4.0835 -0.9153 -3.5039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227172466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:47 Heat of formation + Delta-G solvation = -0.805026 kcal Electronic energy + Delta-G solvation = -21689.742197 eV Core-core repulsion = 18635.233520 eV Total energy + Delta-G solvation = -3054.508677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03097 -37.85127 -35.94810 -34.87698 -32.38194 -30.91007 -29.79014 -28.82147 -27.51324 -26.12893 -24.55543 -22.47882 -21.98420 -20.73596 -20.18057 -19.88575 -17.67353 -16.95027 -15.81885 -15.53588 -15.33122 -14.58796 -14.23591 -14.21440 -13.83046 -13.74201 -13.50222 -12.96922 -12.58623 -12.43936 -12.03155 -11.94921 -11.86872 -11.65778 -11.49820 -11.18029 -11.02037 -10.98792 -10.80719 -10.75198 -10.48233 -10.39357 -10.05955 -9.93113 -9.85619 -9.63115 -8.63104 -8.55080 -7.72484 -6.88179 -5.74407 -3.08154 1.59082 1.75766 3.39157 3.44615 3.47056 3.67579 4.02962 4.48823 4.95429 5.02974 5.18832 5.25944 5.27964 5.31640 5.40705 5.44458 5.52295 5.53645 5.65488 5.72039 5.75647 5.81607 5.89815 5.98269 6.02037 6.09793 6.14061 6.20896 6.34554 6.40455 6.41715 6.55132 6.56271 6.68374 6.74430 6.78824 6.84130 7.09020 7.37964 7.52188 7.75324 7.99954 8.20878 9.17030 9.78287 10.42980 11.37354 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.005162 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.703118 B = 5422.916115 C = 5608.501848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.066 4.066 4 C -0.124 4.124 5 C -0.086 4.086 6 C -0.167 4.167 7 C -0.085 4.085 8 C -0.200 4.200 9 C 0.148 3.852 10 O -0.299 6.299 11 C 0.052 3.948 12 H 0.071 0.929 13 C -0.124 4.124 14 C 0.134 3.866 15 N -0.604 5.604 16 C -0.233 4.233 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.165 3.835 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.021 0.979 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.032 10.069 9.688 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.103 4.103 4 C -0.124 4.124 5 C -0.104 4.104 6 C -0.185 4.185 7 C -0.103 4.103 8 C -0.219 4.219 9 C 0.102 3.898 10 O -0.212 6.212 11 C -0.005 4.005 12 H 0.089 0.911 13 C -0.163 4.163 14 C 0.008 3.992 15 N -0.331 5.331 16 C -0.361 4.361 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.040 3.960 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.198 9.817 9.675 14.409 hybrid contribution 0.541 -0.947 -0.509 1.204 sum -3.657 8.871 9.166 13.270 Atomic orbital electron populations 1.21755 0.96103 1.01426 1.01350 1.21491 0.95233 0.96336 1.02652 1.20384 0.90379 0.97381 1.02163 1.19217 0.95956 1.06608 0.90651 1.20767 0.94036 0.99150 0.96429 1.20914 0.94173 1.05673 0.97787 1.20894 0.99561 0.97837 0.91995 1.21404 0.93420 1.07329 0.99743 1.18873 0.90409 0.94308 0.86216 1.86088 1.36062 1.86813 1.12198 1.23982 0.93690 1.00924 0.81886 0.91127 1.22833 1.00084 0.99199 0.94160 1.21574 0.95530 0.87603 0.94479 1.44345 1.79660 1.07143 1.01996 1.19051 1.41374 0.85828 0.89808 0.90185 1.24846 1.01700 0.97791 0.95906 1.69960 1.53707 1.25188 1.07629 0.86123 0.77618 0.83189 0.78978 1.21648 1.21591 1.20560 1.21562 1.00231 0.89292 0.84897 0.92904 0.93239 0.92707 0.91068 0.92396 0.90850 0.91854 0.86084 0.86528 0.86266 0.85032 0.90416 0.91520 0.93460 0.96131 0.93644 0.93718 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.15 0.37 -1.37 16 2 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 3 C -0.07 -0.89 5.06 -27.88 -0.14 -1.03 16 4 C -0.12 -1.90 5.15 -104.47 -0.54 -2.44 16 5 C -0.09 -1.15 9.68 -39.60 -0.38 -1.54 16 6 C -0.17 -2.22 10.04 -39.56 -0.40 -2.62 16 7 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 8 C -0.20 -3.41 8.91 -39.43 -0.35 -3.76 16 9 C 0.15 2.62 6.65 -39.21 -0.26 2.36 16 10 O -0.30 -5.71 9.01 -19.44 -0.18 -5.88 16 11 C 0.05 1.01 2.74 -24.90 -0.07 0.95 16 12 H 0.07 1.29 6.25 -51.93 -0.32 0.96 16 13 C -0.12 -2.23 6.81 -24.58 -0.17 -2.39 16 14 C 0.13 2.76 7.23 -2.53 -0.02 2.74 16 15 N -0.60 -15.54 3.39 -170.07 -0.58 -16.11 16 16 C -0.23 -6.51 10.26 -15.06 -0.15 -6.67 16 17 H 0.08 2.15 7.84 -52.48 -0.41 1.74 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 19 N -0.92 -27.23 10.36 55.49 0.57 -26.66 16 20 Si 0.91 22.19 29.56 -169.99 -5.02 17.17 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.17 4.08 4.95 -3.06 -0.02 4.06 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 31 H 0.06 0.72 8.05 -51.92 -0.42 0.30 16 32 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.13 2.32 5.64 -52.49 -0.30 2.02 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 1.21 7.29 -51.93 -0.38 0.83 16 42 H 0.06 1.71 7.21 -51.93 -0.37 1.33 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -30.52 338.20 -9.69 -40.21 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.81 Total: 1.60 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.78 Total: -15.42 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: 0.00 Total: -42.77 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.18 Total: -5.88 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.52 -9.69 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227172466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.409 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds