Wall clock time and date at job start Mon Mar 30 2020 02:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47179 * 2 1 4 4 C 1.50697 * 109.47202 * 179.97438 * 3 2 1 5 5 C 1.38172 * 120.02758 * 265.00020 * 4 3 2 6 6 C 1.38245 * 120.05649 * 179.97438 * 5 4 3 7 7 C 1.38292 * 120.10793 * 0.02562 * 6 5 4 8 8 C 1.38112 * 120.06124 * 0.02866 * 7 6 5 9 9 C 1.38709 * 120.03030 * 84.72160 * 4 3 2 10 10 O 1.35903 * 120.05239 * 0.02562 * 9 4 3 11 11 C 1.42903 * 116.99698 * 174.30142 * 10 9 4 12 12 H 1.08997 * 110.64068 * 327.02977 * 11 10 9 13 13 C 1.55158 * 110.71506 * 203.89570 * 11 10 9 14 14 C 1.54914 * 101.57776 * 206.13103 * 13 11 10 15 15 N 1.47425 * 104.83339 * 37.01279 * 14 13 11 16 16 C 1.36927 * 125.65164 * 155.90792 * 15 14 13 17 17 H 1.08005 * 120.00168 * 5.18359 * 16 15 14 18 18 C 1.38812 * 120.00306 * 185.18624 * 16 15 14 19 19 N 1.31620 * 119.99804 * 352.93172 * 18 16 15 20 20 Si 1.86801 * 120.00149 * 172.93290 * 18 16 15 21 21 H 1.48502 * 109.47024 * 94.98273 * 20 18 16 22 22 H 1.48498 * 109.47088 * 214.98229 * 20 18 16 23 23 H 1.48503 * 109.47148 * 334.98273 * 20 18 16 24 24 C 1.47027 * 108.70220 * 335.86744 * 15 14 13 25 25 H 1.09000 * 109.47346 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47549 * 300.00419 * 1 2 3 27 27 H 1.08996 * 109.47035 * 60.00190 * 1 2 3 28 28 H 1.08995 * 109.47408 * 239.99754 * 2 1 3 29 29 H 1.09006 * 109.47080 * 119.99726 * 2 1 3 30 30 H 1.08996 * 109.46982 * 299.99843 * 3 2 1 31 31 H 1.09008 * 109.47054 * 59.99857 * 3 2 1 32 32 H 1.08004 * 119.96972 * 359.97003 * 5 4 3 33 33 H 1.08001 * 119.94476 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.96686 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.03148 * 179.97438 * 8 7 6 36 36 H 1.09000 * 111.00660 * 324.20195 * 13 11 10 37 37 H 1.08995 * 111.00955 * 88.02311 * 13 11 10 38 38 H 1.09008 * 110.36390 * 155.84558 * 14 13 11 39 39 H 1.08999 * 110.36735 * 278.16859 * 14 13 11 40 40 H 0.97004 * 119.99971 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.88258 * 241.64734 * 24 15 14 42 42 H 1.08994 * 109.88388 * 120.47701 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2379 1.5470 1.1926 6 6 5.6203 1.5465 1.1940 7 6 6.3151 1.4421 0.0028 8 6 5.6292 1.3386 -1.1914 9 6 4.2416 1.3319 -1.1949 10 8 3.5643 1.2238 -2.3681 11 6 4.3395 1.2397 -3.5685 12 1 5.2155 1.8777 -3.4518 13 6 3.4780 1.7051 -4.7721 14 6 4.2077 1.0259 -5.9578 15 7 4.6414 -0.2823 -5.4347 16 6 4.8998 -1.3969 -6.1870 17 1 4.8713 -1.3392 -7.2652 18 6 5.1983 -2.6009 -5.5641 19 7 5.3702 -2.6422 -4.2599 20 14 5.3561 -4.1626 -6.5770 21 1 6.7839 -4.3906 -6.9158 22 1 4.8433 -5.3149 -5.7931 23 1 4.5668 -4.0237 -7.8271 24 6 4.7515 -0.1919 -3.9714 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.6974 1.6291 2.1241 33 1 6.1585 1.6278 2.1267 34 1 7.3951 1.4424 0.0065 35 1 6.1723 1.2575 -2.1214 36 1 2.4542 1.3416 -4.6835 37 1 3.4979 2.7904 -4.8704 38 1 3.5247 0.8915 -6.7967 39 1 5.0709 1.6182 -6.2615 40 1 5.5792 -3.4836 -3.8246 41 1 5.7801 -0.3818 -3.6646 42 1 4.0835 -0.9153 -3.5039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227172466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:46 Heat of formation + Delta-G solvation = -16.877194 kcal Electronic energy + Delta-G solvation = -21690.439139 eV Core-core repulsion = 18635.233520 eV Total energy + Delta-G solvation = -3055.205619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35625 -39.32949 -37.54367 -35.96641 -34.37951 -32.04696 -31.28709 -30.43063 -29.26344 -27.21192 -26.51919 -23.83877 -23.13504 -22.17695 -21.75443 -21.33471 -19.05274 -18.96660 -17.26684 -17.03684 -16.68435 -16.10617 -15.78404 -15.51775 -15.26052 -15.18407 -14.67444 -14.38309 -14.20603 -13.97215 -13.59510 -13.41380 -13.19476 -12.95914 -12.86811 -12.75594 -12.70322 -12.50713 -12.17640 -12.03169 -12.00200 -11.89667 -11.75367 -11.51398 -11.35379 -11.33650 -10.75900 -9.72032 -9.01887 -8.95075 -7.90042 -5.26663 0.42563 0.56516 1.42822 1.45227 1.54764 2.24964 2.48169 2.85508 3.29343 3.57849 3.75838 3.85167 3.93066 3.96355 4.04887 4.16119 4.22448 4.30114 4.33666 4.50082 4.50553 4.59449 4.66448 4.76596 4.82895 4.92006 4.92430 4.94840 5.02848 5.10093 5.22154 5.29952 5.32444 5.33915 5.42788 5.44948 5.53566 5.60784 5.64451 5.66579 5.99665 6.11923 6.56477 7.02068 7.70223 8.34483 9.20254 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.005162 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.703118 B = 5422.916115 C = 5608.501848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.062 4.062 4 C -0.132 4.132 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.094 4.094 8 C -0.223 4.223 9 C 0.112 3.888 10 O -0.310 6.310 11 C 0.066 3.934 12 H 0.084 0.916 13 C -0.110 4.110 14 C 0.128 3.872 15 N -0.627 5.627 16 C -0.246 4.246 17 H 0.090 0.910 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.182 3.818 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.246 0.754 41 H 0.007 0.993 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 11.588 10.883 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.099 4.099 4 C -0.133 4.133 5 C -0.100 4.100 6 C -0.176 4.176 7 C -0.112 4.112 8 C -0.241 4.241 9 C 0.067 3.933 10 O -0.223 6.223 11 C 0.009 3.991 12 H 0.102 0.898 13 C -0.148 4.148 14 C 0.003 3.997 15 N -0.355 5.355 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.260 4.260 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.223 1.223 23 H -0.189 1.189 24 C 0.057 3.943 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.175 0.825 33 H 0.170 0.830 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.025 0.975 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -4.877 11.376 10.848 16.458 hybrid contribution 0.796 -1.387 -0.803 1.790 sum -4.081 9.989 10.045 14.742 Atomic orbital electron populations 1.21724 0.94230 1.01845 1.02385 1.21441 0.96886 0.96370 1.00788 1.20403 0.89269 0.97054 1.03147 1.19591 0.97088 1.06122 0.90473 1.21228 0.94415 0.97445 0.96934 1.21366 0.94429 1.03341 0.98469 1.21204 1.00734 0.97486 0.91746 1.21430 0.93516 1.08979 1.00221 1.19272 0.90985 0.96604 0.86455 1.86059 1.36148 1.87530 1.12546 1.23683 0.94849 0.97437 0.83126 0.89817 1.22797 0.98881 1.01450 0.91658 1.21825 0.96464 0.85628 0.95766 1.44684 1.79745 1.08628 1.02462 1.19511 1.40415 0.86905 0.90608 0.89263 1.25750 1.02153 1.01091 0.97021 1.70219 1.55085 1.25216 1.09370 0.85049 0.77684 0.78737 0.77804 1.21189 1.22255 1.18868 1.21156 0.96906 0.91726 0.84546 0.92864 0.90710 0.93096 0.95411 0.91771 0.91999 0.88591 0.82463 0.82960 0.84386 0.86926 0.90912 0.87209 0.92391 0.94501 0.94509 0.97519 0.97001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.12 -3.22 5.92 30.59 0.18 -3.04 16 3 C -0.06 -1.59 5.06 29.85 0.15 -1.44 16 4 C -0.13 -3.94 5.15 -19.77 -0.10 -4.05 16 5 C -0.08 -1.98 9.68 22.26 0.22 -1.77 16 6 C -0.16 -3.75 10.04 22.28 0.22 -3.53 16 7 C -0.09 -2.67 10.04 22.25 0.22 -2.45 16 8 C -0.22 -7.86 8.91 22.37 0.20 -7.66 16 9 C 0.11 4.07 6.65 22.51 0.15 4.22 16 10 O -0.31 -12.32 9.01 -92.46 -0.83 -13.16 16 11 C 0.07 2.67 2.74 31.78 0.09 2.76 16 12 H 0.08 3.14 6.25 -2.39 -0.01 3.13 16 13 C -0.11 -3.84 6.81 31.99 0.22 -3.62 16 14 C 0.13 5.18 7.23 86.86 0.63 5.81 16 15 N -0.63 -33.31 3.39 -691.97 -2.35 -35.66 16 16 C -0.25 -14.09 10.26 84.04 0.86 -13.23 16 17 H 0.09 4.81 7.84 -2.91 -0.02 4.78 16 18 C -0.07 -3.94 5.48 84.86 0.46 -3.47 16 19 N -0.95 -59.52 10.36 21.65 0.22 -59.30 16 20 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 24 C 0.18 9.58 4.95 86.73 0.43 10.01 16 25 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.06 1.73 7.70 -2.39 -0.02 1.71 16 31 H 0.10 1.84 8.05 -2.38 -0.02 1.82 16 32 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 34 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.11 4.28 5.64 -2.91 -0.02 4.26 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 38 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.01 0.39 7.29 -2.39 -0.02 0.38 16 42 H 0.01 0.72 7.21 -2.39 -0.02 0.71 16 Total: -1.00 -70.64 338.20 4.69 -65.94 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.98 Total: 17.31 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.65 Total: -23.94 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -2.12 Total: -94.96 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.83 Total: -13.16 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -70.64 4.69 -65.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227172466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.065 kcal (2) G-P(sol) polarization free energy of solvation -70.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds