Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47559 * 2 1 4 4 C 1.50696 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99620 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47050 * 269.99854 * 17 15 13 19 19 H 1.48500 * 109.47059 * 29.99940 * 17 15 13 20 20 H 1.48498 * 109.47018 * 149.99592 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08998 * 109.46707 * 59.99910 * 1 2 3 25 25 H 1.08993 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46771 * 300.00743 * 1 2 3 27 27 H 1.09001 * 109.47506 * 239.99373 * 2 1 3 28 28 H 1.09002 * 109.46876 * 119.99614 * 2 1 3 29 29 H 1.08995 * 109.47007 * 59.99873 * 3 2 1 30 30 H 1.09002 * 109.46711 * 299.99715 * 3 2 1 31 31 H 1.07996 * 119.97067 * 0.02562 * 5 4 3 32 32 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 33 33 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 34 34 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 35 35 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 36 36 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 37 37 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 38 38 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 40 40 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 41 41 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 42 42 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2368 1.4425 -1.1990 6 6 5.6182 1.4429 -1.2022 7 6 6.3136 1.4428 -0.0017 8 8 7.6726 1.4437 -0.0022 9 6 8.3207 1.5717 -1.2693 10 6 9.7523 2.1204 -1.1904 11 7 10.2172 0.7325 -1.0104 12 6 11.4398 0.4821 -1.7855 13 6 12.0201 -0.8517 -1.3914 14 1 11.5301 -1.4529 -0.6400 15 6 13.1773 -1.3038 -1.9894 16 7 13.7743 -0.5713 -2.9040 17 14 13.8970 -2.9567 -1.5004 18 1 14.8470 -2.7693 -0.3745 19 1 12.8028 -3.8677 -1.0785 20 1 14.6133 -3.5470 -2.6595 21 6 9.0212 0.2945 -1.7537 22 6 5.6192 1.4365 1.1994 23 6 4.2377 1.4414 1.1972 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.6951 1.4430 -2.1333 32 1 6.1565 1.4425 -2.1384 33 1 7.6991 2.0534 -2.0240 34 1 9.9273 2.7534 -0.3205 35 1 10.0944 2.5760 -2.1197 36 1 12.1663 1.2688 -1.5823 37 1 11.2005 0.4743 -2.8489 38 1 14.5886 -0.8891 -3.3245 39 1 9.1684 0.2628 -2.8333 40 1 8.5767 -0.6200 -1.3611 41 1 6.1582 1.4319 2.1352 42 1 3.6968 1.4403 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227180464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = 14.494344 kcal Electronic energy + Delta-G solvation = -20281.697219 eV Core-core repulsion = 17227.851972 eV Total energy + Delta-G solvation = -3053.845247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46440 -39.08224 -37.03237 -34.74794 -32.86595 -31.09413 -30.49998 -29.20871 -26.22727 -25.60484 -25.19060 -23.11751 -22.33094 -21.54182 -20.90904 -19.45668 -17.94716 -16.37959 -16.07903 -15.63735 -15.46543 -15.09780 -14.79412 -14.42806 -14.29975 -13.80892 -13.76240 -13.42474 -13.29610 -13.00588 -12.74003 -12.25256 -12.19111 -11.96502 -11.76082 -11.40361 -11.31124 -11.08517 -10.96771 -10.92013 -10.70926 -10.46369 -10.33651 -10.00820 -9.67672 -9.27710 -9.01748 -8.43968 -7.97829 -7.86447 -6.04477 -4.05421 1.32655 1.41827 3.26790 3.32617 3.38026 3.43073 3.71846 4.42331 4.60939 4.63291 4.70437 4.79761 4.84067 4.87784 4.89588 5.15311 5.21603 5.24741 5.30849 5.33460 5.45502 5.54060 5.57914 5.63870 5.74585 5.83635 5.86138 5.90554 6.00228 6.04815 6.07864 6.15296 6.27615 6.33848 6.40600 6.58416 6.59903 6.82499 7.12511 7.62540 7.63822 7.84869 8.08429 8.44331 9.02414 9.58803 11.06652 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002886 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.603319 B = 9698.504590 C =10084.080280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.073 4.073 4 C -0.131 4.131 5 C -0.077 4.077 6 C -0.209 4.209 7 C 0.136 3.864 8 O -0.276 6.276 9 C 0.044 3.956 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.053 3.947 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.280 1.280 19 H -0.273 1.273 20 H -0.287 1.287 21 C -0.006 4.006 22 C -0.153 4.153 23 C -0.079 4.079 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.855 5.757 3.535 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.110 4.110 4 C -0.132 4.132 5 C -0.095 4.095 6 C -0.227 4.227 7 C 0.090 3.910 8 O -0.189 6.189 9 C -0.013 4.013 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.206 1.206 19 H -0.198 1.198 20 H -0.213 1.213 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.097 4.097 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.148 0.852 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.356 5.456 4.236 24.356 hybrid contribution 0.575 -0.614 -0.972 1.285 sum -22.782 4.842 3.264 23.518 Atomic orbital electron populations 1.21793 0.95911 1.01622 1.01703 1.21540 0.95390 0.96408 1.02494 1.20522 0.90963 0.97057 1.02475 1.19725 0.95540 1.04809 0.93097 1.20780 0.93232 0.97964 0.97513 1.21311 0.95209 1.08636 0.97580 1.19168 0.83117 0.94715 0.94039 1.86189 1.15261 1.86468 1.30961 1.23703 0.93618 0.99548 0.84392 1.24005 0.91013 0.96013 1.01903 1.69089 1.02520 1.03436 1.42860 1.20310 0.87337 0.98120 0.91264 1.21098 1.08431 1.02853 1.21828 0.91824 1.25009 0.96868 0.97800 0.95095 1.69953 1.19325 1.37881 1.26932 0.86459 0.79169 0.83650 0.77940 1.20570 1.19806 1.21291 1.24244 0.93474 0.97728 0.98089 1.20442 0.93694 1.06565 0.96477 1.20786 0.92909 0.98374 0.97594 0.92798 0.92764 0.92783 0.91875 0.91851 0.91336 0.91393 0.86168 0.85197 0.89686 0.89703 0.90454 0.95163 0.97838 0.92914 0.90614 0.89991 0.85227 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 3 C -0.07 -0.57 5.34 -27.88 -0.15 -0.72 16 4 C -0.13 -1.36 5.13 -104.60 -0.54 -1.89 16 5 C -0.08 -0.84 9.69 -39.60 -0.38 -1.23 16 6 C -0.21 -2.66 9.03 -39.43 -0.36 -3.02 16 7 C 0.14 1.98 6.68 -39.21 -0.26 1.71 16 8 O -0.28 -4.70 10.19 -19.43 -0.20 -4.90 16 9 C 0.04 0.71 4.06 -26.19 -0.11 0.61 16 10 C 0.00 0.00 7.52 -7.54 -0.06 -0.06 16 11 N -0.46 -10.27 6.32 -246.11 -1.55 -11.82 16 12 C 0.16 4.11 4.57 -4.97 -0.02 4.09 16 13 C -0.50 -14.64 9.39 -34.44 -0.32 -14.96 16 14 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.90 22.11 29.54 -169.99 -5.02 17.08 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 22 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 23 C -0.08 -0.85 9.69 -39.60 -0.38 -1.23 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.53 5.89 -52.49 -0.31 1.22 16 33 H 0.09 1.13 5.90 -51.93 -0.31 0.82 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 36 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.08 1.39 7.42 -51.93 -0.39 1.00 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -31.49 346.55 -10.56 -42.05 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.82 Total: -1.93 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.92 Total: -19.43 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.82 Total: -38.08 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.49 -10.56 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227180464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.540 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds