Wall clock time and date at job start Mon Mar 30 2020 02:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47559 * 2 1 4 4 C 1.50696 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.94702 * 89.99620 * 4 3 2 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 3 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47050 * 269.99854 * 17 15 13 19 19 H 1.48500 * 109.47059 * 29.99940 * 17 15 13 20 20 H 1.48498 * 109.47018 * 149.99592 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08998 * 109.46707 * 59.99910 * 1 2 3 25 25 H 1.08993 * 109.47338 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46771 * 300.00743 * 1 2 3 27 27 H 1.09001 * 109.47506 * 239.99373 * 2 1 3 28 28 H 1.09002 * 109.46876 * 119.99614 * 2 1 3 29 29 H 1.08995 * 109.47007 * 59.99873 * 3 2 1 30 30 H 1.09002 * 109.46711 * 299.99715 * 3 2 1 31 31 H 1.07996 * 119.97067 * 0.02562 * 5 4 3 32 32 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 33 33 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 34 34 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 35 35 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 36 36 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 37 37 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 38 38 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 40 40 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 41 41 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 42 42 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.2368 1.4425 -1.1990 6 6 5.6182 1.4429 -1.2022 7 6 6.3136 1.4428 -0.0017 8 8 7.6726 1.4437 -0.0022 9 6 8.3207 1.5717 -1.2693 10 6 9.7523 2.1204 -1.1904 11 7 10.2172 0.7325 -1.0104 12 6 11.4398 0.4821 -1.7855 13 6 12.0201 -0.8517 -1.3914 14 1 11.5301 -1.4529 -0.6400 15 6 13.1773 -1.3038 -1.9894 16 7 13.7743 -0.5713 -2.9040 17 14 13.8970 -2.9567 -1.5004 18 1 14.8470 -2.7693 -0.3745 19 1 12.8028 -3.8677 -1.0785 20 1 14.6133 -3.5470 -2.6595 21 6 9.0212 0.2945 -1.7537 22 6 5.6192 1.4365 1.1994 23 6 4.2377 1.4414 1.1972 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.6951 1.4430 -2.1333 32 1 6.1565 1.4425 -2.1384 33 1 7.6991 2.0534 -2.0240 34 1 9.9273 2.7534 -0.3205 35 1 10.0944 2.5760 -2.1197 36 1 12.1663 1.2688 -1.5823 37 1 11.2005 0.4743 -2.8489 38 1 14.5886 -0.8891 -3.3245 39 1 9.1684 0.2628 -2.8333 40 1 8.5767 -0.6200 -1.3611 41 1 6.1582 1.4319 2.1352 42 1 3.6968 1.4403 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227180464.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:03 Heat of formation + Delta-G solvation = -4.769886 kcal Electronic energy + Delta-G solvation = -20282.532578 eV Core-core repulsion = 17227.851972 eV Total energy + Delta-G solvation = -3054.680606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.72006 -40.25509 -38.19876 -35.50524 -34.99294 -32.05277 -31.49005 -30.84059 -27.50995 -27.01813 -26.61847 -24.40578 -23.26113 -22.98362 -21.76954 -20.69498 -19.13289 -18.55467 -17.27053 -16.96647 -16.51124 -16.41251 -15.99112 -15.77521 -15.44394 -15.08550 -14.98465 -14.40084 -14.32116 -14.25233 -13.89357 -13.61083 -13.53153 -13.06070 -13.02252 -12.74522 -12.65885 -12.37877 -12.30481 -11.97824 -11.84441 -11.78493 -11.52101 -11.42605 -11.34718 -11.22747 -10.64431 -9.91976 -9.63176 -8.96165 -8.25960 -6.36043 0.42483 0.48413 1.37424 1.39144 1.50710 2.09351 2.37111 2.79760 3.05862 3.30088 3.31823 3.74138 3.90603 3.92352 4.02226 4.20783 4.26315 4.32864 4.40513 4.47480 4.49690 4.55492 4.58133 4.62452 4.68839 4.86068 4.87798 4.90968 4.97269 5.02124 5.07111 5.13294 5.26871 5.33241 5.42671 5.45585 5.52216 5.54564 5.74647 5.75524 5.92938 6.04659 6.40967 6.54027 6.77510 7.33395 8.84971 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030741 B = 0.002886 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.603319 B = 9698.504590 C =10084.080280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.070 4.070 4 C -0.126 4.126 5 C -0.081 4.081 6 C -0.214 4.214 7 C 0.102 3.898 8 O -0.302 6.302 9 C 0.071 3.929 10 C -0.001 4.001 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.529 4.529 14 H 0.052 0.948 15 C 0.003 3.997 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.268 1.268 20 H -0.276 1.276 21 C -0.009 4.009 22 C -0.166 4.166 23 C -0.079 4.079 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.004 0.996 37 H -0.011 1.011 38 H 0.266 0.734 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.089 5.606 3.576 26.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.107 4.107 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.233 4.233 7 C 0.057 3.943 8 O -0.215 6.215 9 C 0.014 3.986 10 C -0.130 4.130 11 N -0.210 5.210 12 C 0.045 3.955 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.193 1.193 20 H -0.201 1.201 21 C -0.138 4.138 22 C -0.185 4.185 23 C -0.097 4.097 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.022 0.978 37 H 0.006 0.994 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.616 5.316 4.285 26.510 hybrid contribution 1.135 -0.533 -0.947 1.572 sum -24.480 4.782 3.338 25.165 Atomic orbital electron populations 1.21773 0.94793 1.01940 1.02312 1.21518 0.96356 0.96009 1.01872 1.20571 0.88959 0.97474 1.03712 1.20101 0.97055 1.02770 0.92664 1.21104 0.92672 0.97192 0.98901 1.21455 0.96110 1.08586 0.97141 1.19450 0.82158 0.97229 0.95424 1.86139 1.16986 1.87266 1.31154 1.23443 0.93149 0.96953 0.85085 1.24078 0.92318 0.93898 1.02732 1.68993 1.02078 1.06883 1.43041 1.19975 0.88603 0.96222 0.90715 1.21393 1.09226 1.04089 1.22009 0.92943 1.25903 0.97062 1.01713 0.94840 1.70055 1.19751 1.39670 1.27663 0.85378 0.78399 0.78836 0.77987 1.19790 1.19289 1.20126 1.24275 0.92475 0.98966 0.98114 1.20646 0.94759 1.06988 0.96116 1.21092 0.92098 0.97449 0.99054 0.92231 0.92656 0.92143 0.92588 0.92466 0.90097 0.90229 0.83843 0.84523 0.86124 0.89413 0.89087 0.97798 0.99354 0.92478 0.90027 0.91039 0.85387 0.83356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 3 C -0.07 -0.88 5.34 29.85 0.16 -0.72 16 4 C -0.13 -2.28 5.13 -19.85 -0.10 -2.38 16 5 C -0.08 -1.58 9.69 22.25 0.22 -1.37 16 6 C -0.21 -5.14 9.03 22.37 0.20 -4.94 16 7 C 0.10 2.92 6.68 22.51 0.15 3.07 16 8 O -0.30 -10.29 10.19 -92.46 -0.94 -11.23 16 9 C 0.07 2.24 4.06 30.94 0.13 2.36 16 10 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 11 N -0.49 -22.53 6.32 -932.93 -5.89 -28.42 16 12 C 0.17 9.40 4.57 85.56 0.39 9.79 16 13 C -0.53 -31.57 9.39 25.60 0.24 -31.33 16 14 H 0.05 3.17 7.81 -2.91 -0.02 3.14 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 17 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C -0.01 -0.34 7.56 83.58 0.63 0.29 16 22 C -0.17 -4.21 9.99 22.37 0.22 -3.98 16 23 C -0.08 -1.56 9.69 22.26 0.22 -1.34 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 30 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 32 H 0.14 2.96 5.89 -2.91 -0.02 2.95 16 33 H 0.12 2.97 5.90 -2.39 -0.01 2.95 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.09 3.03 7.91 -2.39 -0.02 3.01 16 36 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 37 H -0.01 -0.63 7.30 -2.39 -0.02 -0.65 16 38 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.08 3.02 7.42 -2.38 -0.02 3.00 16 40 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 42 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -68.79 346.55 0.89 -67.90 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.98 Total: 11.79 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 4.44 Total: -31.40 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -5.61 Total: -84.68 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.94 Total: -11.23 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.79 0.89 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227180464.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.126 kcal (2) G-P(sol) polarization free energy of solvation -68.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds