Wall clock time and date at job start Mon Mar 30 2020 02:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46517 * 2 1 4 4 C 1.50707 * 109.46809 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.94468 * 89.99709 * 4 3 2 6 6 C 1.38153 * 120.05681 * 180.02562 * 5 4 3 7 7 C 1.38732 * 119.93886 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05056 * 180.02562 * 7 6 5 9 9 C 1.42903 * 116.99731 * 185.84883 * 8 7 6 10 10 H 1.09008 * 110.78253 * 33.22614 * 9 8 7 11 11 C 1.55157 * 110.71880 * 156.46157 * 9 8 7 12 12 C 1.54914 * 101.58191 * 153.86792 * 11 9 8 13 13 N 1.47431 * 104.82925 * 322.99120 * 12 11 9 14 14 C 1.36933 * 125.64453 * 204.08253 * 13 12 11 15 15 H 1.07999 * 119.99844 * 167.17472 * 14 13 12 16 16 C 1.38812 * 120.00166 * 347.17618 * 14 13 12 17 17 N 1.31618 * 120.00185 * 352.36499 * 16 14 13 18 18 Si 1.86798 * 119.99714 * 172.36601 * 16 14 13 19 19 H 1.48493 * 109.47411 * 85.04646 * 18 16 14 20 20 H 1.48508 * 109.47133 * 205.04470 * 18 16 14 21 21 H 1.48505 * 109.47414 * 325.04228 * 18 16 14 22 22 C 1.47018 * 108.70396 * 24.12755 * 13 12 11 23 23 C 1.38727 * 119.89296 * 0.27850 * 7 6 5 24 24 C 1.38153 * 119.94200 * 359.46916 * 23 7 6 25 25 H 1.09000 * 109.47311 * 300.00099 * 1 2 3 26 26 H 1.08998 * 109.47538 * 60.00399 * 1 2 3 27 27 H 1.09007 * 109.47003 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47311 * 239.99901 * 2 1 3 29 29 H 1.09002 * 109.47064 * 119.99651 * 2 1 3 30 30 H 1.09000 * 109.47411 * 59.99962 * 3 2 1 31 31 H 1.08994 * 109.47082 * 299.99265 * 3 2 1 32 32 H 1.07999 * 119.97383 * 359.97438 * 5 4 3 33 33 H 1.07998 * 120.02945 * 179.97438 * 6 5 4 34 34 H 1.09007 * 111.00361 * 271.93774 * 11 9 8 35 35 H 1.08995 * 111.00338 * 35.79108 * 11 9 8 36 36 H 1.08996 * 110.36577 * 81.82846 * 12 11 9 37 37 H 1.09000 * 110.36662 * 204.15528 * 12 11 9 38 38 H 0.96998 * 119.99747 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.88524 * 239.52610 * 22 13 12 40 40 H 1.09001 * 109.88314 * 118.35876 * 22 13 12 41 41 H 1.07996 * 120.03013 * 179.72187 * 23 7 6 42 42 H 1.07997 * 119.96845 * 180.22945 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5469 1.4427 -0.0006 5 6 4.2365 1.4428 -1.1989 6 6 5.6181 1.4424 -1.2022 7 6 6.3133 1.4423 -0.0017 8 8 7.6723 1.4423 -0.0023 9 6 8.3216 1.3125 1.2641 10 1 7.7378 0.6823 1.9352 11 6 9.7562 0.7477 1.0901 12 6 10.4669 1.3117 2.3458 13 7 9.8954 2.6582 2.5300 14 6 10.4989 3.6985 3.1848 15 1 10.1010 4.6983 3.0924 16 6 11.6220 3.4681 3.9673 17 7 12.0186 2.2353 4.2025 18 14 12.5705 4.9076 4.6866 19 1 11.9417 5.3253 5.9653 20 1 13.9762 4.4990 4.9365 21 1 12.5478 6.0431 3.7297 22 6 8.5700 2.6988 1.8951 23 6 5.6190 1.4368 1.1993 24 6 4.2375 1.4426 1.1972 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.6948 1.4425 -2.1332 33 1 6.1563 1.4421 -2.1385 34 1 9.7510 -0.3423 1.1007 35 1 10.2169 1.1258 0.1775 36 1 10.2550 0.6877 3.2140 37 1 11.5418 1.3757 2.1767 38 1 12.8037 2.0744 4.7490 39 1 8.5528 3.4665 1.1215 40 1 7.8063 2.9073 2.6443 41 1 6.1580 1.4322 2.1352 42 1 3.6966 1.4421 2.1320 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227180691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:50 Heat of formation + Delta-G solvation = -19.370364 kcal Electronic energy + Delta-G solvation = -20716.805713 eV Core-core repulsion = 17661.491982 eV Total energy + Delta-G solvation = -3055.313731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32967 -39.49527 -37.88464 -35.52841 -34.29984 -32.00349 -31.52057 -30.90634 -29.19117 -27.05242 -26.30837 -23.98012 -23.10114 -22.22620 -21.91628 -21.25130 -19.27343 -18.99344 -17.12499 -16.78281 -16.67083 -16.44188 -15.83138 -15.51375 -15.32571 -15.14566 -14.45234 -14.39833 -14.27716 -14.18107 -13.69966 -13.60175 -13.46212 -12.94226 -12.79844 -12.75908 -12.65162 -12.34814 -12.08230 -12.04014 -11.97436 -11.85513 -11.80021 -11.51978 -11.41270 -11.37225 -10.75191 -9.92573 -8.99451 -8.92017 -7.94238 -5.31919 0.41630 0.48192 1.44729 1.46921 1.55863 2.16914 2.47493 2.80890 3.26389 3.56134 3.64007 3.87563 3.90558 3.91535 3.94111 4.07850 4.21351 4.31144 4.42428 4.47741 4.52671 4.58121 4.63563 4.72332 4.83221 4.87056 4.92224 4.94592 5.01531 5.07411 5.12749 5.26734 5.33337 5.36025 5.41928 5.46707 5.50175 5.52376 5.62293 5.74658 5.92558 6.13272 6.49966 7.01192 7.66261 8.32994 9.17982 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035192 B = 0.003182 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.439486 B = 8797.967657 C = 9092.619593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.124 4.124 5 C -0.077 4.077 6 C -0.161 4.161 7 C 0.103 3.897 8 O -0.315 6.315 9 C 0.088 3.912 10 H 0.091 0.909 11 C -0.124 4.124 12 C 0.180 3.820 13 N -0.622 5.622 14 C -0.253 4.253 15 H 0.076 0.924 16 C -0.058 4.058 17 N -0.946 5.946 18 Si 0.982 3.018 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.272 1.272 22 C 0.119 3.881 23 C -0.218 4.218 24 C -0.083 4.083 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.137 0.863 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.012 0.988 37 H 0.042 0.958 38 H 0.252 0.748 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.121 0.879 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.503 -5.029 -10.245 23.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.180 4.180 7 C 0.058 3.942 8 O -0.229 6.229 9 C 0.032 3.968 10 H 0.109 0.891 11 C -0.162 4.162 12 C 0.055 3.945 13 N -0.349 5.349 14 C -0.381 4.381 15 H 0.093 0.907 16 C -0.252 4.252 17 N -0.593 5.593 18 Si 0.809 3.191 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.197 1.197 22 C -0.007 4.007 23 C -0.236 4.236 24 C -0.101 4.101 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.172 0.828 33 H 0.155 0.845 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.030 0.970 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.139 0.861 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -20.210 -4.982 -10.283 23.217 hybrid contribution 1.012 0.697 1.010 1.591 sum -19.198 -4.286 -9.273 21.747 Atomic orbital electron populations 1.21777 0.94811 1.02002 1.02246 1.21506 0.96322 0.95767 1.01987 1.20582 0.88892 0.97721 1.03612 1.20088 0.97080 1.02727 0.92551 1.21126 0.92198 0.97256 0.98937 1.20673 0.94673 1.06698 0.95937 1.19426 0.82338 0.97182 0.95232 1.86101 1.17009 1.87748 1.32045 1.23287 0.93963 0.96113 0.83484 0.89123 1.23016 0.92533 1.01190 0.99450 1.21215 0.96547 0.84515 0.92182 1.44631 1.15156 1.10596 1.64528 1.19345 1.09016 0.87885 1.21903 0.90658 1.25729 1.00572 0.99362 0.99523 1.70109 1.27021 1.19574 1.42615 0.85068 0.77392 0.78353 0.78290 1.20759 1.21499 1.19714 1.21780 0.87832 0.95964 0.95105 1.21430 0.96298 1.08840 0.97059 1.21060 0.92526 0.97542 0.99011 0.92513 0.92054 0.92463 0.92002 0.92709 0.90704 0.89877 0.82815 0.84527 0.88267 0.90789 0.97021 0.93950 0.93887 0.95623 0.95561 0.86132 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.57 5.92 30.59 0.18 -1.39 16 3 C -0.07 -1.01 5.34 29.85 0.16 -0.85 16 4 C -0.12 -2.51 5.13 -19.85 -0.10 -2.61 16 5 C -0.08 -1.57 9.69 22.25 0.22 -1.36 16 6 C -0.16 -4.12 9.99 22.37 0.22 -3.89 16 7 C 0.10 3.19 6.67 22.51 0.15 3.34 16 8 O -0.32 -11.19 9.87 -92.46 -0.91 -12.10 16 9 C 0.09 3.30 2.74 31.78 0.09 3.39 16 10 H 0.09 3.16 6.28 -2.38 -0.01 3.14 16 11 C -0.12 -4.76 6.81 31.99 0.22 -4.54 16 12 C 0.18 8.99 5.39 86.86 0.47 9.46 16 13 N -0.62 -33.35 3.39 -691.98 -2.35 -35.70 16 14 C -0.25 -14.63 10.23 84.03 0.86 -13.77 16 15 H 0.08 4.23 7.84 -2.91 -0.02 4.20 16 16 C -0.06 -3.33 5.41 84.86 0.46 -2.87 16 17 N -0.95 -56.80 10.73 21.65 0.23 -56.57 16 18 Si 0.98 45.98 29.56 68.60 2.03 48.01 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.12 5.33 6.78 86.73 0.59 5.91 16 23 C -0.22 -6.33 8.90 22.37 0.20 -6.13 16 24 C -0.08 -1.97 9.69 22.26 0.22 -1.76 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.10 3.20 8.14 -2.38 -0.02 3.18 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.83 16 36 H 0.01 0.63 8.02 -2.39 -0.02 0.61 16 37 H 0.04 2.34 7.07 -2.39 -0.02 2.32 16 38 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.03 1.19 8.06 -2.39 -0.02 1.17 16 40 H 0.03 1.17 7.78 -2.39 -0.02 1.15 16 41 H 0.12 3.69 5.60 -2.91 -0.02 3.67 16 42 H 0.14 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -66.10 339.78 4.61 -61.49 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.98 Total: 12.82 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 4.64 Total: -17.95 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -2.12 Total: -92.27 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.91 Total: -12.10 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -66.10 4.61 -61.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227180691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.122 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds