Wall clock time and date at job start Mon Mar 30 2020 02:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47148 * 2 1 4 4 C 1.50703 * 109.47018 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.94317 * 270.29730 * 4 3 2 6 6 C 1.38147 * 120.05279 * 180.30141 * 5 4 3 7 7 C 1.38724 * 119.94305 * 359.42381 * 6 5 4 8 8 O 1.35902 * 120.05607 * 180.29878 * 7 6 5 9 9 C 1.42894 * 117.00323 * 174.51849 * 8 7 6 10 10 H 1.08999 * 110.64553 * 326.90313 * 9 8 7 11 11 C 1.55161 * 110.72189 * 203.75870 * 9 8 7 12 12 C 1.54914 * 101.58072 * 206.13612 * 11 9 8 13 13 N 1.47419 * 104.83627 * 37.00771 * 12 11 9 14 14 C 1.36940 * 125.65104 * 155.90559 * 13 12 11 15 15 H 1.08000 * 119.99758 * 179.97438 * 14 13 12 16 16 C 1.38810 * 119.99534 * 359.97438 * 14 13 12 17 17 N 1.31612 * 120.00607 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47242 * 119.99789 * 18 16 14 21 21 H 1.48500 * 109.46840 * 240.00270 * 18 16 14 22 22 C 1.47025 * 108.70293 * 335.87333 * 13 12 11 23 23 C 1.38733 * 119.89153 * 0.27648 * 7 6 5 24 24 C 1.38139 * 119.94422 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.46909 * 60.00375 * 1 2 3 26 26 H 1.08995 * 109.47288 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47560 * 300.00594 * 1 2 3 28 28 H 1.08995 * 109.47540 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.47419 * 119.99712 * 2 1 3 30 30 H 1.08995 * 109.46977 * 59.99560 * 3 2 1 31 31 H 1.09002 * 109.46909 * 299.99624 * 3 2 1 32 32 H 1.07997 * 119.97209 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.02488 * 179.69454 * 6 5 4 34 34 H 1.08993 * 111.00024 * 324.20675 * 11 9 8 35 35 H 1.08994 * 110.99984 * 88.02558 * 11 9 8 36 36 H 1.08998 * 110.36651 * 155.85058 * 12 11 9 37 37 H 1.09009 * 110.36345 * 278.16904 * 12 11 9 38 38 H 0.97002 * 120.00679 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.88520 * 241.63910 * 22 13 12 40 40 H 1.09000 * 109.88311 * 120.47567 * 22 13 12 41 41 H 1.07998 * 120.02774 * 180.02562 * 23 7 6 42 42 H 1.07998 * 119.97534 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2366 1.4365 1.1990 6 6 5.6181 1.4427 1.2023 7 6 6.3134 1.4430 0.0018 8 8 7.6724 1.4430 0.0024 9 6 8.3217 1.3217 -1.2647 10 1 7.7351 0.6976 -1.9389 11 6 9.7543 0.7505 -1.0950 12 6 10.4674 1.3228 -2.3456 13 7 9.9008 2.6727 -2.5185 14 6 10.5081 3.7166 -3.1641 15 1 10.0074 4.6706 -3.2378 16 6 11.7672 3.5483 -3.7237 17 7 12.3776 2.3858 -3.6334 18 14 12.5961 4.9725 -4.6037 19 1 11.7076 6.1618 -4.5664 20 1 13.8797 5.2916 -3.9289 21 1 12.8593 4.5959 -6.0158 22 6 8.5752 2.7124 -1.8838 23 6 5.6191 1.4428 -1.1993 24 6 4.2377 1.4418 -1.1972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.6949 1.4314 2.1332 33 1 6.1563 1.4430 2.1387 34 1 10.2159 1.1193 -0.1791 35 1 9.7452 -0.3392 -1.1143 36 1 11.5425 1.3815 -2.1756 37 1 10.2537 0.7068 -3.2192 38 1 13.2576 2.2683 -4.0241 39 1 7.8125 2.9299 -2.6315 40 1 8.5603 3.4737 -1.1039 41 1 6.1581 1.4426 -2.1351 42 1 3.6967 1.4412 -2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227180692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:55 Heat of formation + Delta-G solvation = -1.511261 kcal Electronic energy + Delta-G solvation = -20718.369101 eV Core-core repulsion = 17663.829799 eV Total energy + Delta-G solvation = -3054.539302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.11798 -38.21543 -36.32395 -34.70412 -32.34505 -30.95020 -30.41029 -29.24353 -27.42332 -26.05686 -24.51744 -22.84332 -22.22212 -20.95709 -20.25929 -19.94052 -17.99835 -17.04568 -15.91145 -15.56646 -15.23414 -14.86053 -14.70845 -14.32776 -13.93789 -13.78818 -13.48080 -13.36869 -12.94714 -12.73911 -12.48356 -12.11237 -11.99406 -11.79473 -11.56502 -11.27032 -11.09580 -11.01951 -10.96841 -10.84312 -10.70155 -10.38422 -10.17894 -10.00265 -9.82770 -9.62556 -8.91807 -8.70437 -7.87782 -6.90179 -5.70212 -3.12502 1.42591 1.51850 3.38088 3.43205 3.45939 3.52621 3.82421 4.46129 4.67283 4.71904 4.90074 4.93852 5.00549 5.18906 5.26286 5.30886 5.33542 5.42173 5.44501 5.54448 5.59123 5.62362 5.63416 5.67600 5.77821 5.83882 5.95740 6.08683 6.10572 6.24705 6.37413 6.39634 6.47835 6.48827 6.62155 6.63551 6.67898 6.95751 7.41425 7.57957 7.73294 7.81608 8.29474 9.16546 9.76816 10.40100 11.34264 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.003170 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.068776 B = 8830.580430 C = 9150.644609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.073 4.073 4 C -0.133 4.133 5 C -0.080 4.080 6 C -0.157 4.157 7 C 0.138 3.862 8 O -0.305 6.305 9 C 0.069 3.931 10 H 0.077 0.923 11 C -0.136 4.136 12 C 0.152 3.848 13 N -0.601 5.601 14 C -0.222 4.222 15 H 0.079 0.921 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.917 3.083 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.290 1.290 22 C 0.120 3.880 23 C -0.205 4.205 24 C -0.076 4.076 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.016 0.984 38 H 0.253 0.747 39 H 0.026 0.974 40 H 0.035 0.965 41 H 0.132 0.868 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.982 -5.302 8.018 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.110 4.110 4 C -0.133 4.133 5 C -0.098 4.098 6 C -0.176 4.176 7 C 0.092 3.908 8 O -0.218 6.218 9 C 0.013 3.987 10 H 0.095 0.905 11 C -0.175 4.175 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.351 4.351 15 H 0.097 0.903 16 C -0.206 4.206 17 N -0.572 5.572 18 Si 0.747 3.253 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.217 1.217 22 C -0.007 4.007 23 C -0.224 4.224 24 C -0.094 4.094 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.132 0.868 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.149 0.851 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.649 -5.229 8.059 20.978 hybrid contribution 0.368 0.698 -0.767 1.100 sum -18.281 -4.531 7.292 20.197 Atomic orbital electron populations 1.21795 0.95946 1.01550 1.01743 1.21535 0.95355 0.96491 1.02379 1.20520 0.91042 0.96961 1.02496 1.19705 0.95467 1.05023 0.93098 1.20751 0.92935 0.98656 0.97493 1.20414 0.93703 1.07099 0.96352 1.19132 0.83294 0.94499 0.93919 1.86157 1.15446 1.86944 1.33225 1.23679 0.94110 0.98212 0.82721 0.90512 1.23208 0.92479 0.99354 1.02456 1.21998 1.00885 0.83952 0.90387 1.44392 1.13977 1.09712 1.64779 1.19136 0.98567 0.90365 1.26987 0.90305 1.24803 0.97316 0.97362 1.01162 1.69764 1.15341 1.22046 1.50035 0.85960 0.79287 0.81059 0.78973 1.20475 1.21634 1.21686 1.21688 0.89555 0.93982 0.95464 1.21402 0.95241 1.07996 0.97759 1.20794 0.93265 0.97867 0.97507 0.92766 0.92823 0.92791 0.91913 0.91934 0.91378 0.91353 0.85899 0.85456 0.90799 0.91537 0.86849 0.96569 0.93635 0.95662 0.94675 0.85059 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.15 0.37 -0.64 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.07 -0.64 5.34 -27.88 -0.15 -0.79 16 4 C -0.13 -1.51 5.14 -104.60 -0.54 -2.05 16 5 C -0.08 -0.93 9.69 -39.60 -0.38 -1.32 16 6 C -0.16 -2.15 9.99 -39.44 -0.39 -2.54 16 7 C 0.14 2.19 6.67 -39.22 -0.26 1.93 16 8 O -0.30 -5.52 9.86 -19.43 -0.19 -5.71 16 9 C 0.07 1.30 2.74 -24.89 -0.07 1.23 16 10 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16 11 C -0.14 -2.69 6.81 -24.58 -0.17 -2.85 16 12 C 0.15 3.72 5.89 -2.53 -0.01 3.70 16 13 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 14 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 15 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 16 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 18 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 C 0.12 2.62 6.80 -3.06 -0.02 2.60 16 23 C -0.21 -3.03 8.90 -39.43 -0.35 -3.39 16 24 C -0.08 -0.96 9.69 -39.61 -0.38 -1.34 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.11 3.08 5.87 -51.93 -0.31 2.78 16 37 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.03 0.54 7.80 -51.93 -0.41 0.14 16 40 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 41 H 0.13 1.97 5.62 -52.49 -0.30 1.68 16 42 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -30.03 338.71 -9.69 -39.72 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.79 Total: -0.22 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.77 Total: -13.41 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.02 Total: -42.58 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.03 -9.69 -39.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227180692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.207 kcal (2) G-P(sol) polarization free energy of solvation -30.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds