Wall clock time and date at job start Mon Mar 30 2020 02:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.47148 * 2 1 4 4 C 1.50703 * 109.47018 * 179.97438 * 3 2 1 5 5 C 1.38265 * 119.94317 * 270.29730 * 4 3 2 6 6 C 1.38147 * 120.05279 * 180.30141 * 5 4 3 7 7 C 1.38724 * 119.94305 * 359.42381 * 6 5 4 8 8 O 1.35902 * 120.05607 * 180.29878 * 7 6 5 9 9 C 1.42894 * 117.00323 * 174.51849 * 8 7 6 10 10 H 1.08999 * 110.64553 * 326.90313 * 9 8 7 11 11 C 1.55161 * 110.72189 * 203.75870 * 9 8 7 12 12 C 1.54914 * 101.58072 * 206.13612 * 11 9 8 13 13 N 1.47419 * 104.83627 * 37.00771 * 12 11 9 14 14 C 1.36940 * 125.65104 * 155.90559 * 13 12 11 15 15 H 1.08000 * 119.99758 * 179.97438 * 14 13 12 16 16 C 1.38810 * 119.99534 * 359.97438 * 14 13 12 17 17 N 1.31612 * 120.00607 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99669 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47041 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47242 * 119.99789 * 18 16 14 21 21 H 1.48500 * 109.46840 * 240.00270 * 18 16 14 22 22 C 1.47025 * 108.70293 * 335.87333 * 13 12 11 23 23 C 1.38733 * 119.89153 * 0.27648 * 7 6 5 24 24 C 1.38139 * 119.94422 * 359.97438 * 23 7 6 25 25 H 1.09002 * 109.46909 * 60.00375 * 1 2 3 26 26 H 1.08995 * 109.47288 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47560 * 300.00594 * 1 2 3 28 28 H 1.08995 * 109.47540 * 239.99905 * 2 1 3 29 29 H 1.09001 * 109.47419 * 119.99712 * 2 1 3 30 30 H 1.08995 * 109.46977 * 59.99560 * 3 2 1 31 31 H 1.09002 * 109.46909 * 299.99624 * 3 2 1 32 32 H 1.07997 * 119.97209 * 0.02562 * 5 4 3 33 33 H 1.08005 * 120.02488 * 179.69454 * 6 5 4 34 34 H 1.08993 * 111.00024 * 324.20675 * 11 9 8 35 35 H 1.08994 * 110.99984 * 88.02558 * 11 9 8 36 36 H 1.08998 * 110.36651 * 155.85058 * 12 11 9 37 37 H 1.09009 * 110.36345 * 278.16904 * 12 11 9 38 38 H 0.97002 * 120.00679 * 180.02562 * 17 16 14 39 39 H 1.08994 * 109.88520 * 241.63910 * 22 13 12 40 40 H 1.09000 * 109.88311 * 120.47567 * 22 13 12 41 41 H 1.07998 * 120.02774 * 180.02562 * 23 7 6 42 42 H 1.07998 * 119.97534 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2366 1.4365 1.1990 6 6 5.6181 1.4427 1.2023 7 6 6.3134 1.4430 0.0018 8 8 7.6724 1.4430 0.0024 9 6 8.3217 1.3217 -1.2647 10 1 7.7351 0.6976 -1.9389 11 6 9.7543 0.7505 -1.0950 12 6 10.4674 1.3228 -2.3456 13 7 9.9008 2.6727 -2.5185 14 6 10.5081 3.7166 -3.1641 15 1 10.0074 4.6706 -3.2378 16 6 11.7672 3.5483 -3.7237 17 7 12.3776 2.3858 -3.6334 18 14 12.5961 4.9725 -4.6037 19 1 11.7076 6.1618 -4.5664 20 1 13.8797 5.2916 -3.9289 21 1 12.8593 4.5959 -6.0158 22 6 8.5752 2.7124 -1.8838 23 6 5.6191 1.4428 -1.1993 24 6 4.2377 1.4418 -1.1972 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.6949 1.4314 2.1332 33 1 6.1563 1.4430 2.1387 34 1 10.2159 1.1193 -0.1791 35 1 9.7452 -0.3392 -1.1143 36 1 11.5425 1.3815 -2.1756 37 1 10.2537 0.7068 -3.2192 38 1 13.2576 2.2683 -4.0241 39 1 7.8125 2.9299 -2.6315 40 1 8.5603 3.4737 -1.1039 41 1 6.1581 1.4426 -2.1351 42 1 3.6967 1.4412 -2.1319 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227180692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:54 Heat of formation + Delta-G solvation = -16.453341 kcal Electronic energy + Delta-G solvation = -20719.017038 eV Core-core repulsion = 17663.829799 eV Total energy + Delta-G solvation = -3055.187239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33155 -39.49437 -37.89149 -35.53232 -34.29314 -32.00474 -31.52667 -30.91908 -29.13401 -27.05960 -26.32980 -23.98418 -23.10117 -22.18487 -21.91513 -21.24968 -19.27553 -19.03907 -17.16172 -16.81878 -16.61531 -16.43081 -15.80590 -15.52212 -15.30748 -15.13960 -14.45470 -14.37671 -14.29055 -14.19546 -13.69136 -13.60521 -13.33888 -13.02858 -12.81003 -12.78566 -12.67283 -12.32962 -12.06173 -12.00645 -11.96616 -11.86164 -11.72978 -11.47932 -11.40746 -11.35288 -10.81183 -9.92956 -9.01661 -8.94733 -7.83336 -5.29268 0.41336 0.47929 1.45670 1.46855 1.57413 2.17442 2.47612 2.80608 3.27687 3.57832 3.64295 3.87553 3.91233 3.91496 3.94650 4.07540 4.21247 4.31096 4.42779 4.47575 4.53391 4.57714 4.63447 4.72767 4.83246 4.86789 4.92724 4.94499 5.01249 5.07324 5.12500 5.26562 5.33175 5.39287 5.42133 5.46383 5.52236 5.52705 5.71251 5.74347 5.92482 6.23158 6.50311 7.04052 7.68677 8.31848 9.19258 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036305 B = 0.003170 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.068776 B = 8830.580430 C = 9150.644609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.124 4.124 5 C -0.077 4.077 6 C -0.162 4.162 7 C 0.103 3.897 8 O -0.317 6.317 9 C 0.087 3.913 10 H 0.092 0.908 11 C -0.123 4.123 12 C 0.155 3.845 13 N -0.623 5.623 14 C -0.244 4.244 15 H 0.079 0.921 16 C -0.064 4.064 17 N -0.948 5.948 18 Si 0.985 3.015 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.119 3.881 23 C -0.217 4.217 24 C -0.083 4.083 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.001 0.999 38 H 0.251 0.749 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.122 0.878 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.326 -5.249 8.772 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.125 4.125 5 C -0.095 4.095 6 C -0.181 4.181 7 C 0.058 3.942 8 O -0.231 6.231 9 C 0.031 3.969 10 H 0.110 0.890 11 C -0.162 4.162 12 C 0.030 3.970 13 N -0.351 5.351 14 C -0.373 4.373 15 H 0.097 0.903 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.812 3.188 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.007 4.007 23 C -0.236 4.236 24 C -0.101 4.101 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.019 0.981 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.140 0.860 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -21.029 -5.178 8.831 23.389 hybrid contribution 0.951 0.680 -0.954 1.509 sum -20.078 -4.499 7.877 22.032 Atomic orbital electron populations 1.21775 0.94809 1.02003 1.02248 1.21507 0.96323 0.95766 1.01989 1.20582 0.88875 0.97722 1.03619 1.20093 0.97085 1.02733 0.92552 1.21122 0.92167 0.97260 0.98964 1.20668 0.94703 1.06766 0.95944 1.19437 0.82339 0.97160 0.95276 1.86106 1.17041 1.87811 1.32098 1.23333 0.93994 0.96109 0.83493 0.89001 1.23022 0.92463 1.00994 0.99700 1.21780 0.99696 0.83579 0.91904 1.44680 1.15641 1.09870 1.64878 1.19470 0.99183 0.91155 1.27465 0.90302 1.25670 0.97881 0.99973 1.02110 1.69999 1.15378 1.23732 1.50600 0.84924 0.78038 0.78354 0.77456 1.19281 1.21522 1.21529 1.21770 0.87885 0.95920 0.95079 1.21429 0.96292 1.08851 0.97038 1.21061 0.92508 0.97495 0.99015 0.92490 0.92463 0.92076 0.92673 0.92038 0.89912 0.90656 0.82855 0.84639 0.91222 0.88459 0.89911 0.98114 0.93968 0.95217 0.95848 0.86016 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.56 5.92 30.60 0.18 -1.38 16 3 C -0.07 -1.00 5.34 29.85 0.16 -0.84 16 4 C -0.12 -2.51 5.14 -19.85 -0.10 -2.61 16 5 C -0.08 -1.58 9.69 22.25 0.22 -1.37 16 6 C -0.16 -4.19 9.99 22.36 0.22 -3.97 16 7 C 0.10 3.20 6.67 22.50 0.15 3.35 16 8 O -0.32 -11.40 9.86 -92.44 -0.91 -12.31 16 9 C 0.09 3.29 2.74 31.79 0.09 3.38 16 10 H 0.09 3.18 6.26 -2.39 -0.01 3.16 16 11 C -0.12 -4.86 6.81 31.99 0.22 -4.64 16 12 C 0.16 7.79 5.89 86.86 0.51 8.30 16 13 N -0.62 -33.44 3.39 -691.97 -2.35 -35.79 16 14 C -0.24 -14.07 10.27 84.03 0.86 -13.21 16 15 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 16 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 17 N -0.95 -56.53 10.09 21.65 0.22 -56.31 16 18 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 C 0.12 5.34 6.80 86.73 0.59 5.93 16 23 C -0.22 -6.28 8.90 22.36 0.20 -6.08 16 24 C -0.08 -1.94 9.69 22.25 0.22 -1.72 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 31 H 0.07 1.00 8.09 -2.39 -0.02 0.98 16 32 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 4.68 5.87 -2.39 -0.01 4.67 16 37 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.03 1.30 7.80 -2.39 -0.02 1.28 16 40 H 0.02 1.10 8.06 -2.39 -0.02 1.08 16 41 H 0.12 3.66 5.62 -2.91 -0.02 3.64 16 42 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.55 338.71 4.66 -60.89 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.98 Total: 14.41 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.69 Total: -18.90 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -2.13 Total: -92.10 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.91 Total: -12.31 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -65.55 4.66 -60.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227180692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.436 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds