Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.97290 * 2 1 4 4 C 1.38246 * 120.11219 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97538 * 179.97438 * 4 3 2 6 6 C 1.38172 * 120.05383 * 359.68714 * 4 3 2 7 7 C 1.50696 * 120.03026 * 180.29132 * 6 4 3 8 8 C 1.38706 * 119.94186 * 0.57100 * 6 4 3 9 9 O 1.35903 * 120.05612 * 179.71800 * 8 6 4 10 10 C 1.42897 * 117.00027 * 182.54978 * 9 8 6 11 11 H 1.09000 * 110.64312 * 33.37021 * 10 9 8 12 12 C 1.55158 * 110.72067 * 156.50834 * 10 9 8 13 13 C 1.54902 * 101.58592 * 153.86676 * 12 10 9 14 14 N 1.47426 * 104.83164 * 322.99092 * 13 12 10 15 15 C 1.36935 * 125.64929 * 204.09026 * 14 13 12 16 16 H 1.07998 * 119.99856 * 163.75508 * 15 14 13 17 17 C 1.38810 * 120.00085 * 343.76352 * 15 14 13 18 18 N 1.31622 * 119.99759 * 331.95275 * 17 15 14 19 19 Si 1.86798 * 120.00206 * 151.96093 * 17 15 14 20 20 H 1.48503 * 109.46901 * 269.99444 * 19 17 15 21 21 H 1.48504 * 109.47229 * 29.99622 * 19 17 15 22 22 H 1.48502 * 109.47439 * 149.99420 * 19 17 15 23 23 C 1.47023 * 108.70338 * 24.35457 * 14 13 12 24 24 C 1.38124 * 119.97139 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47143 * 270.01859 * 1 2 3 26 26 H 1.09005 * 109.47052 * 30.01454 * 1 2 3 27 27 H 1.09002 * 109.47700 * 150.01538 * 1 2 3 28 28 H 1.08001 * 119.94818 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47015 * 90.00061 * 5 4 3 30 30 H 1.08995 * 109.47678 * 210.00857 * 5 4 3 31 31 H 1.09000 * 109.46868 * 330.00270 * 5 4 3 32 32 H 1.09005 * 109.47609 * 270.28087 * 7 6 4 33 33 H 1.09003 * 109.46662 * 30.27891 * 7 6 4 34 34 H 1.08994 * 109.47532 * 150.27837 * 7 6 4 35 35 H 1.09001 * 111.00364 * 35.78653 * 12 10 9 36 36 H 1.09002 * 111.03849 * 271.95752 * 12 10 9 37 37 H 1.08999 * 110.37109 * 204.15171 * 13 12 10 38 38 H 1.08997 * 110.46280 * 81.87376 * 13 12 10 39 39 H 0.97001 * 119.99967 * 354.75015 * 18 17 15 40 40 H 1.08995 * 109.88434 * 118.12926 * 23 14 13 41 41 H 1.09000 * 109.88326 * 239.29735 * 23 14 13 42 42 H 1.08002 * 120.02365 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3300 2.5085 -0.0011 6 6 4.2752 0.0070 0.0055 7 6 5.7821 0.0113 0.0115 8 6 3.5845 -1.1959 0.0000 9 8 4.2657 -2.3719 0.0001 10 6 3.4904 -3.5706 -0.0623 11 1 2.5911 -3.4161 -0.6584 12 6 4.3338 -4.7406 -0.6343 13 6 3.6301 -5.9684 -0.0044 14 7 3.2456 -5.5296 1.3495 15 6 3.0291 -6.3512 2.4234 16 1 3.0100 -5.9407 3.4221 17 6 2.8344 -7.7117 2.2283 18 7 2.3164 -8.1471 1.0993 19 14 3.3073 -8.9245 3.5680 20 1 4.7165 -9.3511 3.3745 21 1 3.1644 -8.2756 4.8961 22 1 2.4170 -10.1110 3.4984 23 6 3.1269 -4.0642 1.3542 24 6 2.1970 -1.1965 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6565 2.1325 0.0004 29 1 4.5112 2.8238 1.0263 30 1 5.2825 2.3809 -0.5154 31 1 3.7385 3.2663 -0.5149 32 1 6.1497 0.0146 -1.0147 33 1 6.1408 0.9013 0.5288 34 1 6.1460 -0.8787 0.5248 35 1 5.3705 -4.6727 -0.3046 36 1 4.2734 -4.7712 -1.7222 37 1 4.3174 -6.8125 0.0513 38 1 2.7454 -6.2380 -0.5812 39 1 2.0005 -7.5148 0.4350 40 1 2.1046 -3.7758 1.5982 41 1 3.8181 -3.6386 2.0817 42 1 1.6569 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227505230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -4.715722 kcal Electronic energy + Delta-G solvation = -21412.086121 eV Core-core repulsion = 18357.407864 eV Total energy + Delta-G solvation = -3054.678258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.37590 -38.34801 -36.40096 -34.32721 -32.58456 -31.11534 -29.29995 -29.13947 -27.66982 -27.05187 -24.79995 -24.28059 -22.07187 -20.88830 -20.20407 -19.63003 -17.59482 -17.38457 -16.28174 -15.50374 -15.28025 -14.50244 -14.45987 -13.89494 -13.61693 -13.47141 -13.38867 -13.17821 -12.97420 -12.90291 -12.77837 -12.70664 -12.27105 -12.00991 -11.85008 -11.59571 -11.28558 -11.11897 -10.93093 -10.78938 -10.61944 -10.53298 -10.19463 -10.06957 -10.00889 -9.55271 -8.46020 -8.43884 -7.90137 -6.99169 -6.13688 -3.17806 1.33866 1.53209 3.40119 3.51288 3.53588 3.69891 3.73073 4.56755 4.71930 4.76947 4.98717 5.06668 5.12903 5.14897 5.16415 5.27262 5.33819 5.41470 5.46535 5.53026 5.56470 5.57745 5.69324 5.72207 5.73973 5.80587 5.81592 5.98164 6.00901 6.11534 6.27040 6.31942 6.44500 6.49307 6.52982 6.62341 6.66598 6.87816 6.95308 6.96335 7.69144 7.76453 8.45171 8.97713 9.77800 10.30929 11.19618 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.004094 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.028026 B = 6837.649627 C = 7240.891597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.163 4.163 4 C -0.051 4.051 5 C -0.113 4.113 6 C -0.131 4.131 7 C -0.103 4.103 8 C 0.146 3.854 9 O -0.300 6.300 10 C 0.070 3.930 11 H 0.078 0.922 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.600 5.600 15 C -0.338 4.338 16 H 0.066 0.934 17 C -0.024 4.024 18 N -0.917 5.917 19 Si 1.070 2.930 20 H -0.292 1.292 21 H -0.292 1.292 22 H -0.289 1.289 23 C 0.120 3.880 24 C -0.211 4.211 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.268 0.732 40 H 0.027 0.973 41 H 0.037 0.963 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 19.018 -4.910 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.051 4.051 5 C -0.169 4.169 6 C -0.131 4.131 7 C -0.160 4.160 8 C 0.100 3.900 9 O -0.213 6.213 10 C 0.014 3.986 11 H 0.096 0.904 12 C -0.165 4.165 13 C 0.019 3.981 14 N -0.328 5.328 15 C -0.465 4.465 16 H 0.084 0.916 17 C -0.226 4.226 18 N -0.558 5.558 19 Si 0.899 3.101 20 H -0.220 1.220 21 H -0.218 1.218 22 H -0.216 1.216 23 C -0.006 4.006 24 C -0.230 4.230 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.099 17.304 -4.423 17.983 hybrid contribution -0.528 1.548 -0.313 1.665 sum 1.571 18.852 -4.736 19.501 Atomic orbital electron populations 1.20802 0.91217 1.02644 1.02468 1.19636 0.95831 0.92437 0.97003 1.20694 0.93288 0.97264 1.06912 1.19499 0.93453 0.94053 0.98135 1.20793 1.00087 0.93728 1.02310 1.19031 0.96290 0.89886 1.07931 1.20590 0.90807 1.02652 1.01915 1.18839 0.90316 0.86047 0.94773 1.86120 1.35758 1.12056 1.87367 1.23594 0.94509 0.82159 0.98374 0.90408 1.22952 1.00162 0.93978 0.99443 1.21564 0.96387 0.93963 0.86179 1.44454 1.80608 0.99864 1.07874 1.19794 1.49992 0.91030 0.85722 0.91571 1.25787 0.98076 0.96153 1.02592 1.70772 1.36716 1.38125 1.10193 0.83448 0.76564 0.75708 0.74363 1.21976 1.21839 1.21573 1.21722 0.98156 0.87228 0.93502 1.21216 0.93171 0.99044 1.09541 0.91002 0.91590 0.91482 0.86346 0.91110 0.91237 0.91605 0.91760 0.91854 0.91084 0.90368 0.91060 0.92273 0.95261 0.92007 0.95546 0.94557 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.00 0.36 -0.85 16 2 C -0.05 -0.65 5.88 -104.65 -0.62 -1.27 16 3 C -0.16 -2.00 9.35 -39.56 -0.37 -2.37 16 4 C -0.05 -0.63 5.88 -104.64 -0.62 -1.25 16 5 C -0.11 -1.00 9.18 36.00 0.33 -0.67 16 6 C -0.13 -1.86 5.89 -104.48 -0.62 -2.47 16 7 C -0.10 -1.25 8.96 36.00 0.32 -0.93 16 8 C 0.15 2.38 6.65 -39.22 -0.26 2.12 16 9 O -0.30 -5.33 8.92 -19.43 -0.17 -5.51 16 10 C 0.07 1.30 2.75 -24.89 -0.07 1.23 16 11 H 0.08 1.36 6.14 -51.93 -0.32 1.04 16 12 C -0.13 -2.38 6.81 -24.59 -0.17 -2.55 16 13 C 0.14 3.39 5.29 -2.53 -0.01 3.37 16 14 N -0.60 -15.66 3.30 -170.07 -0.56 -16.22 16 15 C -0.34 -9.76 10.02 -15.06 -0.15 -9.91 16 16 H 0.07 1.92 7.97 -52.49 -0.42 1.50 16 17 C -0.02 -0.71 5.08 -17.43 -0.09 -0.79 16 18 N -0.92 -27.76 12.94 55.49 0.72 -27.04 16 19 Si 1.07 25.66 30.00 -169.99 -5.10 20.56 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.12 2.66 6.87 -3.06 -0.02 2.64 16 24 C -0.21 -3.26 8.60 -39.43 -0.34 -3.59 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.56 6.72 -51.93 -0.35 0.21 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 6.72 -51.93 -0.35 0.28 16 34 H 0.07 0.96 7.53 -51.93 -0.39 0.56 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.06 1.50 7.92 -51.93 -0.41 1.09 16 38 H 0.03 0.72 6.80 -51.93 -0.35 0.36 16 39 H 0.27 8.10 5.99 -40.82 -0.24 7.86 16 40 H 0.03 0.60 7.95 -51.93 -0.41 0.18 16 41 H 0.04 0.84 8.05 -51.93 -0.42 0.42 16 42 H 0.13 2.05 5.72 -52.49 -0.30 1.75 16 LS Contribution 334.22 15.07 5.04 5.04 Total: -1.00 -31.75 334.22 -8.95 -40.70 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.56 Total: -0.25 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -2.31 Total: -17.28 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.16 Total: -43.26 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.17 Total: -5.51 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.56 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.75 -8.95 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227505230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.987 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds