Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38284 * 119.97290 * 2 1 4 4 C 1.38246 * 120.11219 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97538 * 179.97438 * 4 3 2 6 6 C 1.38172 * 120.05383 * 359.68714 * 4 3 2 7 7 C 1.50696 * 120.03026 * 180.29132 * 6 4 3 8 8 C 1.38706 * 119.94186 * 0.57100 * 6 4 3 9 9 O 1.35903 * 120.05612 * 179.71800 * 8 6 4 10 10 C 1.42897 * 117.00027 * 182.54978 * 9 8 6 11 11 H 1.09000 * 110.64312 * 33.37021 * 10 9 8 12 12 C 1.55158 * 110.72067 * 156.50834 * 10 9 8 13 13 C 1.54902 * 101.58592 * 153.86676 * 12 10 9 14 14 N 1.47426 * 104.83164 * 322.99092 * 13 12 10 15 15 C 1.36935 * 125.64929 * 204.09026 * 14 13 12 16 16 H 1.07998 * 119.99856 * 163.75508 * 15 14 13 17 17 C 1.38810 * 120.00085 * 343.76352 * 15 14 13 18 18 N 1.31622 * 119.99759 * 331.95275 * 17 15 14 19 19 Si 1.86798 * 120.00206 * 151.96093 * 17 15 14 20 20 H 1.48503 * 109.46901 * 269.99444 * 19 17 15 21 21 H 1.48504 * 109.47229 * 29.99622 * 19 17 15 22 22 H 1.48502 * 109.47439 * 149.99420 * 19 17 15 23 23 C 1.47023 * 108.70338 * 24.35457 * 14 13 12 24 24 C 1.38124 * 119.97139 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47143 * 270.01859 * 1 2 3 26 26 H 1.09005 * 109.47052 * 30.01454 * 1 2 3 27 27 H 1.09002 * 109.47700 * 150.01538 * 1 2 3 28 28 H 1.08001 * 119.94818 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47015 * 90.00061 * 5 4 3 30 30 H 1.08995 * 109.47678 * 210.00857 * 5 4 3 31 31 H 1.09000 * 109.46868 * 330.00270 * 5 4 3 32 32 H 1.09005 * 109.47609 * 270.28087 * 7 6 4 33 33 H 1.09003 * 109.46662 * 30.27891 * 7 6 4 34 34 H 1.08994 * 109.47532 * 150.27837 * 7 6 4 35 35 H 1.09001 * 111.00364 * 35.78653 * 12 10 9 36 36 H 1.09002 * 111.03849 * 271.95752 * 12 10 9 37 37 H 1.08999 * 110.37109 * 204.15171 * 13 12 10 38 38 H 1.08997 * 110.46280 * 81.87376 * 13 12 10 39 39 H 0.97001 * 119.99967 * 354.75015 * 18 17 15 40 40 H 1.08995 * 109.88434 * 118.12926 * 23 14 13 41 41 H 1.09000 * 109.88326 * 239.29735 * 23 14 13 42 42 H 1.08002 * 120.02365 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.3300 2.5085 -0.0011 6 6 4.2752 0.0070 0.0055 7 6 5.7821 0.0113 0.0115 8 6 3.5845 -1.1959 0.0000 9 8 4.2657 -2.3719 0.0001 10 6 3.4904 -3.5706 -0.0623 11 1 2.5911 -3.4161 -0.6584 12 6 4.3338 -4.7406 -0.6343 13 6 3.6301 -5.9684 -0.0044 14 7 3.2456 -5.5296 1.3495 15 6 3.0291 -6.3512 2.4234 16 1 3.0100 -5.9407 3.4221 17 6 2.8344 -7.7117 2.2283 18 7 2.3164 -8.1471 1.0993 19 14 3.3073 -8.9245 3.5680 20 1 4.7165 -9.3511 3.3745 21 1 3.1644 -8.2756 4.8961 22 1 2.4170 -10.1110 3.4984 23 6 3.1269 -4.0642 1.3542 24 6 2.1970 -1.1965 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8899 -0.5141 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6565 2.1325 0.0004 29 1 4.5112 2.8238 1.0263 30 1 5.2825 2.3809 -0.5154 31 1 3.7385 3.2663 -0.5149 32 1 6.1497 0.0146 -1.0147 33 1 6.1408 0.9013 0.5288 34 1 6.1460 -0.8787 0.5248 35 1 5.3705 -4.6727 -0.3046 36 1 4.2734 -4.7712 -1.7222 37 1 4.3174 -6.8125 0.0513 38 1 2.7454 -6.2380 -0.5812 39 1 2.0005 -7.5148 0.4350 40 1 2.1046 -3.7758 1.5982 41 1 3.8181 -3.6386 2.0817 42 1 1.6569 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227505230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -21.680694 kcal Electronic energy + Delta-G solvation = -21412.821778 eV Core-core repulsion = 18357.407864 eV Total energy + Delta-G solvation = -3055.413914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.57881 -39.73873 -38.01370 -35.29855 -34.54290 -32.25867 -31.08480 -30.15788 -29.35364 -27.96965 -26.49848 -25.61800 -23.36578 -22.38652 -21.89550 -20.82227 -19.68142 -18.69873 -17.44942 -16.77137 -16.68002 -16.16240 -15.75438 -15.65026 -15.18069 -14.80239 -14.66889 -14.37149 -14.21429 -14.09573 -13.75462 -13.70728 -13.56773 -13.21192 -12.86194 -12.78475 -12.73050 -12.60091 -12.51560 -12.33944 -12.17122 -11.92620 -11.90100 -11.68386 -11.51858 -11.48121 -10.60695 -9.46747 -9.14381 -9.02660 -8.41840 -5.43450 0.30841 0.45680 1.55688 1.63422 1.81805 2.06002 2.59499 2.68916 3.10363 3.39292 3.49517 3.72032 3.75287 3.80302 3.87176 4.06026 4.17025 4.24062 4.30802 4.38698 4.46259 4.62553 4.66881 4.71913 4.75091 4.76854 4.78376 4.79574 4.84460 4.87400 4.91712 4.94074 5.09230 5.13978 5.18619 5.38190 5.44016 5.56711 5.58037 5.66309 5.92138 6.22900 6.42615 6.79033 7.59962 8.15809 8.90970 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026838 B = 0.004094 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.028026 B = 6837.649627 C = 7240.891597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.161 4.161 4 C -0.051 4.051 5 C -0.112 4.112 6 C -0.144 4.144 7 C -0.100 4.100 8 C 0.113 3.887 9 O -0.307 6.307 10 C 0.089 3.911 11 H 0.089 0.911 12 C -0.111 4.111 13 C 0.147 3.853 14 N -0.622 5.622 15 C -0.356 4.356 16 H 0.057 0.943 17 C -0.071 4.071 18 N -0.940 5.940 19 Si 1.121 2.879 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.289 1.289 23 C 0.121 3.879 24 C -0.231 4.231 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.149 0.851 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.033 0.967 38 H 0.018 0.982 39 H 0.257 0.743 40 H 0.019 0.981 41 H 0.024 0.976 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.232 21.491 -5.171 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.179 4.179 4 C -0.051 4.051 5 C -0.168 4.168 6 C -0.145 4.145 7 C -0.157 4.157 8 C 0.068 3.932 9 O -0.220 6.220 10 C 0.032 3.968 11 H 0.107 0.893 12 C -0.149 4.149 13 C 0.022 3.978 14 N -0.350 5.350 15 C -0.484 4.484 16 H 0.075 0.925 17 C -0.268 4.268 18 N -0.582 5.582 19 Si 0.945 3.055 20 H -0.208 1.208 21 H -0.199 1.199 22 H -0.215 1.215 23 C -0.005 4.005 24 C -0.250 4.250 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.167 0.833 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.052 0.948 38 H 0.036 0.964 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.042 0.958 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.528 19.821 -4.694 20.525 hybrid contribution -0.706 0.940 -0.226 1.197 sum 1.822 20.761 -4.919 21.413 Atomic orbital electron populations 1.20851 0.89465 1.03660 1.03038 1.19989 0.97277 0.92144 0.96332 1.21113 0.93568 0.97958 1.05225 1.19971 0.93889 0.94886 0.96381 1.20883 1.00383 0.92068 1.03447 1.19406 0.97443 0.89800 1.07834 1.20608 0.89617 1.02824 1.02616 1.19189 0.90932 0.85991 0.97087 1.86083 1.35677 1.12216 1.88072 1.23247 0.95012 0.82841 0.95735 0.89312 1.22828 0.99516 0.91464 1.01126 1.21492 0.95693 0.95265 0.85329 1.44709 1.80747 1.01283 1.08294 1.20031 1.49982 0.92007 0.86376 0.92546 1.27238 0.97459 0.98027 1.04034 1.70883 1.38501 1.37851 1.10940 0.82776 0.76538 0.73603 0.72597 1.20797 1.19895 1.21488 1.21750 0.97390 0.85357 0.95972 1.21255 0.93119 0.99540 1.11059 0.90556 0.89182 0.91908 0.83334 0.89943 0.90348 0.89672 0.90752 0.89508 0.93044 0.90153 0.87602 0.94843 0.96432 0.93245 0.96292 0.95774 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.21 10.01 71.24 0.71 -1.50 16 2 C -0.06 -1.44 5.88 -19.88 -0.12 -1.56 16 3 C -0.16 -3.47 9.35 22.28 0.21 -3.26 16 4 C -0.05 -1.13 5.88 -19.88 -0.12 -1.24 16 5 C -0.11 -1.54 9.18 71.23 0.65 -0.89 16 6 C -0.14 -3.91 5.89 -19.77 -0.12 -4.03 16 7 C -0.10 -2.28 8.96 71.23 0.64 -1.64 16 8 C 0.11 3.66 6.65 22.51 0.15 3.81 16 9 O -0.31 -10.98 8.92 -92.45 -0.82 -11.81 16 10 C 0.09 3.34 2.75 31.79 0.09 3.42 16 11 H 0.09 3.15 6.14 -2.39 -0.01 3.13 16 12 C -0.11 -4.15 6.81 31.98 0.22 -3.93 16 13 C 0.15 7.12 5.29 86.85 0.46 7.58 16 14 N -0.62 -33.62 3.30 -691.99 -2.28 -35.90 16 15 C -0.36 -21.17 10.02 84.03 0.84 -20.33 16 16 H 0.06 3.38 7.97 -2.91 -0.02 3.35 16 17 C -0.07 -4.18 5.08 84.86 0.43 -3.75 16 18 N -0.94 -58.30 12.94 21.65 0.28 -58.02 16 19 Si 1.12 52.21 30.00 68.60 2.06 54.27 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 C 0.12 5.58 6.87 86.73 0.60 6.17 16 24 C -0.23 -7.15 8.60 22.37 0.19 -6.96 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.09 1.30 8.09 -2.38 -0.02 1.28 16 27 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 28 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.97 6.72 -2.39 -0.02 0.95 16 31 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.09 1.51 6.72 -2.39 -0.02 1.50 16 34 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 37 H 0.03 1.75 7.92 -2.39 -0.02 1.74 16 38 H 0.02 0.90 6.80 -2.39 -0.02 0.88 16 39 H 0.26 16.10 5.99 -92.71 -0.55 15.54 16 40 H 0.02 0.90 7.95 -2.39 -0.02 0.88 16 41 H 0.02 1.16 8.05 -2.39 -0.02 1.14 16 42 H 0.12 3.80 5.72 -2.91 -0.02 3.78 16 Total: -1.00 -70.50 334.22 5.28 -65.22 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.21 Total: 14.34 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 4.84 Total: -28.10 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -2.00 Total: -93.92 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.82 Total: -11.81 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.06 Total: 54.27 kcal Total: -70.50 5.28 -65.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227505230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.543 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds