Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 119.97691 * 2 1 4 4 C 1.38240 * 120.11587 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97322 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.05523 * 0.02904 * 4 3 2 7 7 C 1.50698 * 120.03023 * 179.97438 * 6 4 3 8 8 C 1.38715 * 119.94446 * 359.97438 * 6 4 3 9 9 O 1.35900 * 120.05700 * 180.02562 * 8 6 4 10 10 C 1.42898 * 116.99921 * 174.90038 * 9 8 6 11 11 H 1.09000 * 110.64035 * 321.84160 * 10 9 8 12 12 C 1.55159 * 110.71770 * 198.51070 * 10 9 8 13 13 C 1.55131 * 101.48539 * 205.96878 * 12 10 9 14 14 N 1.47428 * 104.72190 * 37.29275 * 13 12 10 15 15 C 1.36937 * 125.64814 * 155.81580 * 14 13 12 16 16 H 1.07999 * 119.99841 * 179.69532 * 15 14 13 17 17 C 1.38813 * 119.99666 * 359.97102 * 15 14 13 18 18 N 1.31610 * 120.00276 * 359.72451 * 17 15 14 19 19 Si 1.86806 * 119.99624 * 179.72384 * 17 15 14 20 20 H 1.48498 * 109.46924 * 89.99850 * 19 17 15 21 21 H 1.48501 * 109.46795 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47055 * 329.99795 * 19 17 15 23 23 C 1.47022 * 108.70190 * 335.55577 * 14 13 12 24 24 C 1.38127 * 119.97135 * 180.29914 * 2 1 3 25 25 H 1.08993 * 109.47866 * 89.99778 * 1 2 3 26 26 H 1.09009 * 109.47394 * 210.00526 * 1 2 3 27 27 H 1.09005 * 109.46785 * 329.99337 * 1 2 3 28 28 H 1.08006 * 119.93947 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46757 * 270.02462 * 5 4 3 30 30 H 1.08992 * 109.46814 * 30.02695 * 5 4 3 31 31 H 1.08999 * 109.46628 * 150.02703 * 5 4 3 32 32 H 1.08999 * 109.46776 * 270.01899 * 7 6 4 33 33 H 1.09001 * 109.47111 * 30.01108 * 7 6 4 34 34 H 1.08994 * 109.47570 * 150.01881 * 7 6 4 35 35 H 1.09000 * 111.00687 * 324.20878 * 12 10 9 36 36 H 1.08997 * 111.00534 * 88.02455 * 12 10 9 37 37 H 1.09000 * 110.49756 * 278.45532 * 13 12 10 38 38 H 1.08991 * 110.34407 * 156.05915 * 13 12 10 39 39 H 0.97006 * 120.00277 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88159 * 120.70351 * 23 14 13 41 41 H 1.08997 * 109.88288 * 241.71182 * 23 14 13 42 42 H 1.08004 * 120.03161 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.3300 2.5085 -0.0001 6 6 4.2752 0.0070 0.0005 7 6 5.7821 0.0113 0.0005 8 6 3.5845 -1.1960 0.0004 9 8 4.2657 -2.3719 0.0009 10 6 3.4934 -3.5689 0.1139 11 1 2.6619 -3.4260 0.8041 12 6 4.3851 -4.7573 0.5613 13 6 3.6046 -5.9652 -0.0202 14 7 3.0860 -5.4879 -1.3151 15 6 2.7506 -6.2792 -2.3811 16 1 2.3730 -5.8313 -3.2885 17 6 2.8904 -7.6575 -2.2935 18 7 3.3505 -8.2033 -1.1878 19 14 2.4256 -8.7375 -3.7451 20 1 3.6086 -8.9225 -4.6233 21 1 1.9645 -10.0597 -3.2505 22 1 1.3340 -8.0889 -4.5151 23 6 2.9826 -4.0220 -1.2700 24 6 2.1970 -1.1965 -0.0062 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6565 2.1324 0.0004 29 1 4.5108 2.8232 -1.0279 30 1 3.7387 3.2666 0.5134 31 1 5.2828 2.3811 0.5138 32 1 6.1454 0.0128 -1.0272 33 1 6.1429 0.9022 0.5145 34 1 6.1481 -0.8777 0.5139 35 1 5.3811 -4.6845 0.1246 36 1 4.4408 -4.8164 1.6483 37 1 2.7819 -6.2414 0.6393 38 1 4.2737 -6.8127 -0.1687 39 1 3.4485 -9.1664 -1.1267 40 1 3.5987 -3.5826 -2.0546 41 1 1.9438 -3.7194 -1.4016 42 1 1.6570 -2.1319 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227505237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = 0.951844 kcal Electronic energy + Delta-G solvation = -21405.325006 eV Core-core repulsion = 18350.892512 eV Total energy + Delta-G solvation = -3054.432494 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29542 -38.21063 -36.15615 -34.27544 -32.39892 -31.06050 -29.29542 -29.10724 -27.55141 -26.92542 -24.86085 -24.35373 -21.95061 -20.76364 -20.08843 -19.57054 -17.24572 -17.02748 -16.14443 -15.43896 -15.19527 -14.72911 -14.36941 -14.04114 -13.63228 -13.38480 -13.34483 -12.99727 -12.87908 -12.74605 -12.58947 -12.40753 -11.90185 -11.82247 -11.78502 -11.53261 -11.24440 -11.06093 -10.98779 -10.82593 -10.69096 -10.38832 -10.18687 -9.99949 -9.82260 -9.61520 -8.69809 -8.39636 -7.83655 -6.89513 -5.69520 -3.11872 1.40277 1.59338 3.38796 3.43343 3.45453 3.53547 3.79841 4.46508 4.77881 4.82423 5.04641 5.15829 5.22725 5.25599 5.29768 5.34589 5.46429 5.47319 5.54751 5.60581 5.62036 5.68756 5.73328 5.80890 5.83752 5.85239 5.91655 6.03932 6.25275 6.35509 6.40957 6.48340 6.52177 6.57813 6.61073 6.69669 6.73199 7.03690 7.41864 7.58037 7.74765 7.83231 8.30174 9.17095 9.77423 10.40845 11.34749 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026189 B = 0.004137 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.887332 B = 6765.904048 C = 7235.868221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.164 4.164 4 C -0.052 4.052 5 C -0.114 4.114 6 C -0.131 4.131 7 C -0.104 4.104 8 C 0.147 3.853 9 O -0.301 6.301 10 C 0.070 3.930 11 H 0.075 0.925 12 C -0.134 4.134 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.917 3.083 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.119 3.881 24 C -0.210 4.210 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.114 0.886 39 H 0.253 0.747 40 H 0.034 0.966 41 H 0.025 0.975 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 18.374 4.999 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.182 4.182 4 C -0.053 4.053 5 C -0.170 4.170 6 C -0.132 4.132 7 C -0.161 4.161 8 C 0.101 3.899 9 O -0.214 6.214 10 C 0.014 3.986 11 H 0.093 0.907 12 C -0.173 4.173 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.215 1.215 21 H -0.216 1.216 22 H -0.207 1.207 23 C -0.008 4.008 24 C -0.229 4.229 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.132 0.868 39 H 0.064 0.936 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.189 18.100 4.925 18.759 hybrid contribution -0.672 -0.660 -0.751 1.204 sum -0.482 17.440 4.174 17.939 Atomic orbital electron populations 1.20794 0.91283 1.02598 1.02410 1.19634 0.95787 0.92472 0.97137 1.20675 0.93276 0.97229 1.07067 1.19474 0.93450 0.94043 0.98287 1.20829 1.00141 0.93752 1.02319 1.19027 0.96276 0.89944 1.07957 1.20625 0.90871 1.02455 1.02111 1.18852 0.90334 0.86144 0.94589 1.86141 1.36110 1.12176 1.86970 1.23641 0.94616 0.82194 0.98129 0.90742 1.23220 0.99751 0.94411 0.99909 1.22049 0.96175 0.94103 0.84890 1.44386 1.76424 0.99079 1.12933 1.19090 1.36184 0.87940 0.91970 0.90393 1.24790 1.01610 0.96436 0.97688 1.69750 1.51824 1.10127 1.25463 0.86041 0.78062 0.79907 0.81305 1.21486 1.21572 1.20697 1.21728 0.97557 0.87411 0.94076 1.21261 0.93168 0.99056 1.09370 0.91056 0.91481 0.91665 0.86439 0.91133 0.91720 0.91085 0.91640 0.91792 0.91207 0.90780 0.91559 0.96568 0.86814 0.93598 0.94777 0.95726 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 2 C -0.05 -0.68 5.88 -104.65 -0.62 -1.29 16 3 C -0.16 -2.04 9.35 -39.56 -0.37 -2.41 16 4 C -0.05 -0.66 5.88 -104.65 -0.62 -1.27 16 5 C -0.11 -1.04 9.60 36.01 0.35 -0.69 16 6 C -0.13 -1.90 5.89 -104.47 -0.62 -2.52 16 7 C -0.10 -1.29 9.38 36.00 0.34 -0.96 16 8 C 0.15 2.43 6.60 -39.21 -0.26 2.17 16 9 O -0.30 -5.48 8.92 -19.43 -0.17 -5.65 16 10 C 0.07 1.34 2.77 -24.90 -0.07 1.27 16 11 H 0.07 1.33 6.59 -51.93 -0.34 0.99 16 12 C -0.13 -2.65 6.82 -24.46 -0.17 -2.82 16 13 C 0.15 3.72 5.90 -2.41 -0.01 3.71 16 14 N -0.60 -15.75 3.39 -169.94 -0.58 -16.32 16 15 C -0.22 -6.33 10.27 -15.06 -0.15 -6.48 16 16 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 18 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 19 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 23 C 0.12 2.62 6.51 -3.07 -0.02 2.60 16 24 C -0.21 -3.28 8.43 -39.43 -0.33 -3.61 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.70 8.09 -51.92 -0.42 0.28 16 27 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 31 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.64 5.95 -51.93 -0.31 0.33 16 34 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 3.09 5.86 -51.93 -0.30 2.79 16 39 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 41 H 0.02 0.54 7.43 -51.93 -0.39 0.15 16 42 H 0.13 2.09 5.32 -52.48 -0.28 1.81 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -30.39 332.03 -9.00 -39.39 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.50 Total: 0.25 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.28 Total: -13.52 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.02 Total: -42.56 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.17 Total: -5.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.39 -9.00 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227505237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.338 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds