Wall clock time and date at job start Mon Mar 30 2020 01:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38285 * 119.97691 * 2 1 4 4 C 1.38240 * 120.11587 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.97322 * 179.97438 * 4 3 2 6 6 C 1.38166 * 120.05523 * 0.02904 * 4 3 2 7 7 C 1.50698 * 120.03023 * 179.97438 * 6 4 3 8 8 C 1.38715 * 119.94446 * 359.97438 * 6 4 3 9 9 O 1.35900 * 120.05700 * 180.02562 * 8 6 4 10 10 C 1.42898 * 116.99921 * 174.90038 * 9 8 6 11 11 H 1.09000 * 110.64035 * 321.84160 * 10 9 8 12 12 C 1.55159 * 110.71770 * 198.51070 * 10 9 8 13 13 C 1.55131 * 101.48539 * 205.96878 * 12 10 9 14 14 N 1.47428 * 104.72190 * 37.29275 * 13 12 10 15 15 C 1.36937 * 125.64814 * 155.81580 * 14 13 12 16 16 H 1.07999 * 119.99841 * 179.69532 * 15 14 13 17 17 C 1.38813 * 119.99666 * 359.97102 * 15 14 13 18 18 N 1.31610 * 120.00276 * 359.72451 * 17 15 14 19 19 Si 1.86806 * 119.99624 * 179.72384 * 17 15 14 20 20 H 1.48498 * 109.46924 * 89.99850 * 19 17 15 21 21 H 1.48501 * 109.46795 * 209.99936 * 19 17 15 22 22 H 1.48500 * 109.47055 * 329.99795 * 19 17 15 23 23 C 1.47022 * 108.70190 * 335.55577 * 14 13 12 24 24 C 1.38127 * 119.97135 * 180.29914 * 2 1 3 25 25 H 1.08993 * 109.47866 * 89.99778 * 1 2 3 26 26 H 1.09009 * 109.47394 * 210.00526 * 1 2 3 27 27 H 1.09005 * 109.46785 * 329.99337 * 1 2 3 28 28 H 1.08006 * 119.93947 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.46757 * 270.02462 * 5 4 3 30 30 H 1.08992 * 109.46814 * 30.02695 * 5 4 3 31 31 H 1.08999 * 109.46628 * 150.02703 * 5 4 3 32 32 H 1.08999 * 109.46776 * 270.01899 * 7 6 4 33 33 H 1.09001 * 109.47111 * 30.01108 * 7 6 4 34 34 H 1.08994 * 109.47570 * 150.01881 * 7 6 4 35 35 H 1.09000 * 111.00687 * 324.20878 * 12 10 9 36 36 H 1.08997 * 111.00534 * 88.02455 * 12 10 9 37 37 H 1.09000 * 110.49756 * 278.45532 * 13 12 10 38 38 H 1.08991 * 110.34407 * 156.05915 * 13 12 10 39 39 H 0.97006 * 120.00277 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88159 * 120.70351 * 23 14 13 41 41 H 1.08997 * 109.88288 * 241.71182 * 23 14 13 42 42 H 1.08004 * 120.03161 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.3300 2.5085 -0.0001 6 6 4.2752 0.0070 0.0005 7 6 5.7821 0.0113 0.0005 8 6 3.5845 -1.1960 0.0004 9 8 4.2657 -2.3719 0.0009 10 6 3.4934 -3.5689 0.1139 11 1 2.6619 -3.4260 0.8041 12 6 4.3851 -4.7573 0.5613 13 6 3.6046 -5.9652 -0.0202 14 7 3.0860 -5.4879 -1.3151 15 6 2.7506 -6.2792 -2.3811 16 1 2.3730 -5.8313 -3.2885 17 6 2.8904 -7.6575 -2.2935 18 7 3.3505 -8.2033 -1.1878 19 14 2.4256 -8.7375 -3.7451 20 1 3.6086 -8.9225 -4.6233 21 1 1.9645 -10.0597 -3.2505 22 1 1.3340 -8.0889 -4.5151 23 6 2.9826 -4.0220 -1.2700 24 6 2.1970 -1.1965 -0.0062 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5140 28 1 1.6565 2.1324 0.0004 29 1 4.5108 2.8232 -1.0279 30 1 3.7387 3.2666 0.5134 31 1 5.2828 2.3811 0.5138 32 1 6.1454 0.0128 -1.0272 33 1 6.1429 0.9022 0.5145 34 1 6.1481 -0.8777 0.5139 35 1 5.3811 -4.6845 0.1246 36 1 4.4408 -4.8164 1.6483 37 1 2.7819 -6.2414 0.6393 38 1 4.2737 -6.8127 -0.1687 39 1 3.4485 -9.1664 -1.1267 40 1 3.5987 -3.5826 -2.0546 41 1 1.9438 -3.7194 -1.4016 42 1 1.6570 -2.1319 -0.0115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227505237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:51 Heat of formation + Delta-G solvation = -14.765518 kcal Electronic energy + Delta-G solvation = -21406.006561 eV Core-core repulsion = 18350.892512 eV Total energy + Delta-G solvation = -3055.114049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.50785 -39.58999 -37.79830 -35.25369 -34.34149 -32.23942 -31.08261 -30.12295 -29.20710 -27.90418 -26.64297 -25.56591 -23.25159 -22.33426 -21.72096 -20.79803 -19.02023 -18.57720 -17.30271 -16.93035 -16.63109 -16.40657 -15.68184 -15.59885 -14.91237 -14.61449 -14.34482 -14.31060 -14.19514 -13.78020 -13.71106 -13.62606 -13.52524 -13.24767 -12.99117 -12.76485 -12.69621 -12.66048 -12.36203 -12.22025 -12.09437 -12.05142 -11.89304 -11.64196 -11.42959 -11.39230 -10.80963 -9.42779 -9.01327 -8.95744 -7.83433 -5.29668 0.35830 0.50356 1.45266 1.47541 1.56274 2.16151 2.47181 2.74046 3.27371 3.56586 3.63108 3.84239 3.86944 3.89252 3.97536 4.09829 4.22946 4.29738 4.45778 4.52838 4.62082 4.67383 4.72614 4.75837 4.79351 4.81731 4.84010 4.88879 4.91845 4.97591 5.00321 5.15019 5.19487 5.38657 5.43837 5.48354 5.51566 5.62624 5.70048 5.71577 5.98013 6.22718 6.50237 7.03559 7.68085 8.31457 9.18779 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026189 B = 0.004137 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.887332 B = 6765.904048 C = 7235.868221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.162 4.162 4 C -0.052 4.052 5 C -0.113 4.113 6 C -0.146 4.146 7 C -0.102 4.102 8 C 0.114 3.886 9 O -0.310 6.310 10 C 0.089 3.911 11 H 0.087 0.913 12 C -0.120 4.120 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.061 4.061 18 N -0.946 5.946 19 Si 0.984 3.016 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.271 1.271 23 C 0.121 3.879 24 C -0.229 4.229 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.148 0.852 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.001 0.999 38 H 0.084 0.916 39 H 0.251 0.749 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 20.939 5.079 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.180 4.180 4 C -0.053 4.053 5 C -0.169 4.169 6 C -0.146 4.146 7 C -0.158 4.158 8 C 0.068 3.932 9 O -0.224 6.224 10 C 0.032 3.968 11 H 0.105 0.895 12 C -0.159 4.159 13 C 0.031 3.969 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.595 5.595 19 Si 0.812 3.188 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.196 1.196 23 C -0.005 4.005 24 C -0.248 4.248 25 H 0.095 0.905 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.166 0.834 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.019 0.981 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.154 20.701 5.009 21.299 hybrid contribution -0.592 -1.325 -0.779 1.647 sum -0.746 19.376 4.230 19.847 Atomic orbital electron populations 1.20845 0.89432 1.03634 1.03047 1.19993 0.97289 0.92130 0.96369 1.21098 0.93527 0.97966 1.05366 1.19946 0.93917 0.94850 0.96542 1.20914 1.00431 0.92110 1.03414 1.19394 0.97391 0.89893 1.07951 1.20646 0.89759 1.03090 1.02331 1.19201 0.91005 0.86017 0.96930 1.86095 1.36120 1.12409 1.87746 1.23292 0.94639 0.82699 0.96147 0.89544 1.23030 0.98774 0.92594 1.01485 1.21834 0.95411 0.95248 0.84436 1.44671 1.76580 1.00699 1.13042 1.19431 1.36597 0.88815 0.92813 0.90420 1.25650 1.01690 0.97582 1.00413 1.69987 1.52373 1.10072 1.27116 0.85004 0.77928 0.77765 0.78146 1.21035 1.21511 1.19627 1.21780 0.97524 0.85368 0.95846 1.21297 0.93040 0.99602 1.10829 0.90510 0.91837 0.89294 0.83417 0.90038 0.89755 0.90187 0.91576 0.89060 0.92685 0.91111 0.88473 0.98125 0.89778 0.93940 0.96107 0.95507 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.01 71.23 0.71 -1.47 16 2 C -0.06 -1.46 5.88 -19.88 -0.12 -1.58 16 3 C -0.16 -3.54 9.35 22.28 0.21 -3.33 16 4 C -0.05 -1.18 5.88 -19.88 -0.12 -1.30 16 5 C -0.11 -1.61 9.60 71.24 0.68 -0.92 16 6 C -0.15 -4.04 5.89 -19.77 -0.12 -4.15 16 7 C -0.10 -2.39 9.38 71.24 0.67 -1.72 16 8 C 0.11 3.74 6.60 22.51 0.15 3.89 16 9 O -0.31 -11.41 8.92 -92.43 -0.82 -12.23 16 10 C 0.09 3.43 2.77 31.78 0.09 3.52 16 11 H 0.09 3.12 6.59 -2.39 -0.02 3.10 16 12 C -0.12 -4.79 6.82 32.06 0.22 -4.57 16 13 C 0.16 7.84 5.90 86.93 0.51 8.36 16 14 N -0.62 -33.67 3.39 -691.55 -2.35 -36.02 16 15 C -0.25 -14.39 10.27 84.03 0.86 -13.52 16 16 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 17 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 18 N -0.95 -56.41 10.09 21.65 0.22 -56.19 16 19 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.12 5.50 6.51 86.73 0.56 6.06 16 24 C -0.23 -7.13 8.43 22.37 0.19 -6.95 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.26 8.09 -2.38 -0.02 1.24 16 27 H 0.09 1.28 8.09 -2.38 -0.02 1.26 16 28 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 31 H 0.08 1.01 5.95 -2.39 -0.01 1.00 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.58 5.95 -2.39 -0.01 1.56 16 34 H 0.05 1.44 7.53 -2.39 -0.02 1.42 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 38 H 0.08 4.77 5.86 -2.39 -0.01 4.75 16 39 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 40 H 0.02 1.00 8.06 -2.38 -0.02 0.98 16 41 H 0.03 1.21 7.43 -2.39 -0.02 1.19 16 42 H 0.12 3.86 5.32 -2.91 -0.02 3.85 16 Total: -1.00 -67.07 332.03 5.05 -62.02 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 1.00 Total: 15.08 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 4.97 Total: -20.69 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -2.13 Total: -92.21 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.82 Total: -12.23 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -67.07 5.05 -62.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227505237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.251 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds