Wall clock time and date at job start Mon Mar 30 2020 02:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47565 * 2 1 4 4 C 1.50704 * 109.47001 * 119.99869 * 2 1 3 5 5 C 1.38261 * 119.94393 * 119.99628 * 4 2 1 6 6 C 1.38142 * 120.05405 * 180.02562 * 5 4 2 7 7 C 1.38738 * 119.94691 * 0.02562 * 6 5 4 8 8 O 1.35899 * 120.05576 * 180.02562 * 7 6 5 9 9 C 1.42896 * 116.99992 * 185.48553 * 8 7 6 10 10 H 1.09005 * 110.78179 * 33.00424 * 9 8 7 11 11 C 1.55150 * 110.72620 * 156.24945 * 9 8 7 12 12 C 1.54911 * 101.58681 * 153.86322 * 11 9 8 13 13 N 1.47427 * 104.82922 * 322.99263 * 12 11 9 14 14 C 1.36933 * 125.64573 * 204.07543 * 13 12 11 15 15 H 1.07999 * 119.99899 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00005 * 0.06268 * 14 13 12 17 17 N 1.31616 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99941 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46940 * 59.99574 * 18 16 14 20 20 H 1.48501 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47417 * 299.99852 * 18 16 14 22 22 C 1.47020 * 108.70386 * 24.12844 * 13 12 11 23 23 C 1.38723 * 119.88370 * 0.27478 * 7 6 5 24 24 C 1.38151 * 119.94688 * 359.42904 * 23 7 6 25 25 H 1.08996 * 109.47150 * 300.00773 * 1 2 3 26 26 H 1.09007 * 109.46383 * 60.00113 * 1 2 3 27 27 H 1.08993 * 109.47435 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47175 * 239.99771 * 2 1 3 29 29 H 1.09005 * 109.47718 * 59.99628 * 3 2 1 30 30 H 1.08995 * 109.47577 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47194 * 300.00249 * 3 2 1 32 32 H 1.08001 * 119.97425 * 359.97438 * 5 4 2 33 33 H 1.08009 * 120.02836 * 180.02562 * 6 5 4 34 34 H 1.08996 * 111.00796 * 271.94463 * 11 9 8 35 35 H 1.09003 * 111.00043 * 35.79171 * 11 9 8 36 36 H 1.09001 * 110.36151 * 81.83043 * 12 11 9 37 37 H 1.08996 * 110.36567 * 204.15548 * 12 11 9 38 38 H 0.96996 * 120.00057 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.88141 * 239.52243 * 22 13 12 40 40 H 1.08996 * 109.88402 * 118.35701 * 22 13 12 41 41 H 1.08001 * 120.02891 * 179.71943 * 23 7 6 42 42 H 1.08000 * 119.97221 * 180.27317 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8345 1.1024 6 6 3.2883 -2.4878 2.2288 7 6 2.9531 -2.0153 3.4894 8 8 3.4060 -2.6560 4.5990 9 6 2.9246 -2.1878 5.8604 10 1 1.9020 -1.8209 5.7721 11 6 3.0161 -3.3057 6.9323 12 6 3.1297 -2.4777 8.2366 13 7 3.9607 -1.3151 7.8742 14 6 4.7094 -0.5674 8.7433 15 1 5.2863 0.2691 8.3775 16 6 4.7276 -0.8851 10.0945 17 7 4.0248 -1.9047 10.5404 18 14 5.7496 0.1344 11.2801 19 1 5.2838 1.5442 11.2491 20 1 5.5989 -0.4062 12.6549 21 1 7.1781 0.0762 10.8787 22 6 3.8513 -1.0906 6.4254 23 6 2.1504 -0.8909 3.6152 24 6 1.6967 -0.2376 2.4857 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 3.0868 -2.2026 0.1208 33 1 3.9095 -3.3656 2.1282 34 1 2.1147 -3.9185 6.9357 35 1 3.9037 -3.9202 6.7811 36 1 2.1432 -2.1512 8.5657 37 1 3.6163 -3.0633 9.0165 38 1 4.0372 -2.1264 11.4845 39 1 4.8360 -1.1631 5.9636 40 1 3.4213 -0.1075 6.2340 41 1 1.8842 -0.5238 4.5954 42 1 1.0754 0.6404 2.5832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228099518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:59 Heat of formation + Delta-G solvation = 1.965631 kcal Electronic energy + Delta-G solvation = -20981.285097 eV Core-core repulsion = 17926.896565 eV Total energy + Delta-G solvation = -3054.388532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16770 -38.38097 -36.41394 -34.66408 -32.30029 -30.94274 -29.51167 -28.67035 -27.30175 -27.28882 -24.59612 -23.27167 -22.59731 -20.34056 -20.19405 -19.86667 -18.02323 -17.05464 -16.04584 -15.36252 -15.19144 -14.74704 -14.43219 -14.33714 -13.88073 -13.74547 -13.48146 -13.31209 -12.94532 -12.59503 -12.45716 -12.42624 -11.93888 -11.77219 -11.55865 -11.26053 -11.20993 -11.01958 -10.86475 -10.81917 -10.64215 -10.37053 -10.21550 -10.03058 -9.81788 -9.61985 -8.90908 -8.69344 -7.87594 -6.89965 -5.69585 -3.11964 1.43412 1.53135 3.39446 3.43026 3.44460 3.53133 3.83895 4.46608 4.59296 4.68819 4.96532 5.04436 5.05489 5.21636 5.30372 5.31948 5.41606 5.44289 5.44589 5.53070 5.61644 5.62752 5.66157 5.73213 5.80693 5.81953 6.05753 6.07406 6.11626 6.25174 6.38402 6.40860 6.48110 6.49514 6.62621 6.63907 6.69201 6.95974 7.41656 7.57492 7.73721 7.82048 8.29981 9.16950 9.77246 10.40671 11.34741 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.003507 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.474334 B = 7981.656138 C = 8446.497913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.145 4.145 4 C -0.127 4.127 5 C -0.081 4.081 6 C -0.157 4.157 7 C 0.138 3.862 8 O -0.305 6.305 9 C 0.069 3.931 10 H 0.077 0.923 11 C -0.136 4.136 12 C 0.153 3.847 13 N -0.601 5.601 14 C -0.225 4.225 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.924 5.924 18 Si 0.917 3.083 19 H -0.285 1.285 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.120 3.880 23 C -0.206 4.206 24 C -0.073 4.073 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.016 0.984 37 H 0.114 0.886 38 H 0.254 0.746 39 H 0.035 0.965 40 H 0.025 0.975 41 H 0.131 0.869 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.317 1.069 -19.486 20.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.202 4.202 4 C -0.127 4.127 5 C -0.099 4.099 6 C -0.176 4.176 7 C 0.092 3.908 8 O -0.218 6.218 9 C 0.013 3.987 10 H 0.095 0.905 11 C -0.175 4.175 12 C 0.028 3.972 13 N -0.328 5.328 14 C -0.353 4.353 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.748 3.252 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.211 1.211 22 C -0.007 4.007 23 C -0.224 4.224 24 C -0.091 4.091 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.131 0.869 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.149 0.851 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.132 0.918 -19.222 20.197 hybrid contribution 0.352 0.753 0.725 1.102 sum -5.780 1.670 -18.497 19.451 Atomic orbital electron populations 1.21867 0.94696 1.01898 1.01688 1.20010 0.95639 0.95831 0.95326 1.21868 1.01303 0.95346 1.01691 1.19669 1.01173 0.97395 0.94478 1.20778 0.96718 0.94732 0.97653 1.20408 1.04951 1.02602 0.89639 1.19129 0.92914 0.91321 0.87468 1.86159 1.66234 1.56221 1.13140 1.23669 0.97247 0.97430 0.80375 0.90508 1.23205 1.01635 0.96954 0.95690 1.21998 0.94386 0.88025 0.92797 1.44372 1.54091 1.33639 1.00737 1.19046 1.20146 1.08176 0.87914 0.90414 1.24798 1.00241 0.98701 0.96794 1.69745 1.44421 1.29199 1.13833 0.86110 0.79792 0.79266 0.80080 1.21153 1.21486 1.21065 1.21687 0.96940 0.94768 0.87282 1.21397 1.03105 0.97867 1.00048 1.20724 0.98340 0.98716 0.91359 0.92497 0.92692 0.92598 0.90811 0.92474 0.92527 0.92691 0.85906 0.85470 0.91544 0.90803 0.96582 0.86858 0.93534 0.94705 0.95689 0.85087 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.01 37.16 0.33 -0.83 16 2 C -0.05 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.21 9.01 37.15 0.33 -0.88 16 4 C -0.13 -1.45 4.78 -104.60 -0.50 -1.95 16 5 C -0.08 -0.94 9.66 -39.61 -0.38 -1.32 16 6 C -0.16 -2.16 9.99 -39.43 -0.39 -2.55 16 7 C 0.14 2.19 6.67 -39.22 -0.26 1.93 16 8 O -0.30 -5.52 9.86 -19.42 -0.19 -5.71 16 9 C 0.07 1.30 2.74 -24.90 -0.07 1.24 16 10 H 0.08 1.34 6.25 -51.93 -0.32 1.02 16 11 C -0.14 -2.69 6.81 -24.59 -0.17 -2.85 16 12 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 13 N -0.60 -15.74 3.39 -170.07 -0.58 -16.32 16 14 C -0.22 -6.35 10.27 -15.06 -0.15 -6.50 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.83 10.09 55.49 0.56 -26.27 16 18 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.12 2.63 6.81 -3.06 -0.02 2.61 16 23 C -0.21 -3.04 8.91 -39.43 -0.35 -3.39 16 24 C -0.07 -0.92 8.70 -39.60 -0.34 -1.27 16 25 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 29 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.12 1.12 7.94 -52.49 -0.42 0.70 16 33 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 3.08 5.87 -51.93 -0.31 2.77 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 40 H 0.03 0.54 7.82 -51.93 -0.41 0.13 16 41 H 0.13 1.97 5.63 -52.49 -0.30 1.68 16 42 H 0.12 1.29 7.09 -52.49 -0.37 0.92 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -29.99 334.54 -9.20 -39.20 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.64 Total: 0.15 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.37 Total: -13.16 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.99 -9.20 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228099518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.161 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds