Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47565 * 2 1 4 4 C 1.50704 * 109.47001 * 119.99869 * 2 1 3 5 5 C 1.38261 * 119.94393 * 119.99628 * 4 2 1 6 6 C 1.38142 * 120.05405 * 180.02562 * 5 4 2 7 7 C 1.38738 * 119.94691 * 0.02562 * 6 5 4 8 8 O 1.35899 * 120.05576 * 180.02562 * 7 6 5 9 9 C 1.42896 * 116.99992 * 185.48553 * 8 7 6 10 10 H 1.09005 * 110.78179 * 33.00424 * 9 8 7 11 11 C 1.55150 * 110.72620 * 156.24945 * 9 8 7 12 12 C 1.54911 * 101.58681 * 153.86322 * 11 9 8 13 13 N 1.47427 * 104.82922 * 322.99263 * 12 11 9 14 14 C 1.36933 * 125.64573 * 204.07543 * 13 12 11 15 15 H 1.07999 * 119.99899 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00005 * 0.06268 * 14 13 12 17 17 N 1.31616 * 120.00298 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99941 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46940 * 59.99574 * 18 16 14 20 20 H 1.48501 * 109.47186 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47417 * 299.99852 * 18 16 14 22 22 C 1.47020 * 108.70386 * 24.12844 * 13 12 11 23 23 C 1.38723 * 119.88370 * 0.27478 * 7 6 5 24 24 C 1.38151 * 119.94688 * 359.42904 * 23 7 6 25 25 H 1.08996 * 109.47150 * 300.00773 * 1 2 3 26 26 H 1.09007 * 109.46383 * 60.00113 * 1 2 3 27 27 H 1.08993 * 109.47435 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47175 * 239.99771 * 2 1 3 29 29 H 1.09005 * 109.47718 * 59.99628 * 3 2 1 30 30 H 1.08995 * 109.47577 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47194 * 300.00249 * 3 2 1 32 32 H 1.08001 * 119.97425 * 359.97438 * 5 4 2 33 33 H 1.08009 * 120.02836 * 180.02562 * 6 5 4 34 34 H 1.08996 * 111.00796 * 271.94463 * 11 9 8 35 35 H 1.09003 * 111.00043 * 35.79171 * 11 9 8 36 36 H 1.09001 * 110.36151 * 81.83043 * 12 11 9 37 37 H 1.08996 * 110.36567 * 204.15548 * 12 11 9 38 38 H 0.96996 * 120.00057 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.88141 * 239.52243 * 22 13 12 40 40 H 1.08996 * 109.88402 * 118.35701 * 22 13 12 41 41 H 1.08001 * 120.02891 * 179.71943 * 23 7 6 42 42 H 1.08000 * 119.97221 * 180.27317 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8271 -1.8345 1.1024 6 6 3.2883 -2.4878 2.2288 7 6 2.9531 -2.0153 3.4894 8 8 3.4060 -2.6560 4.5990 9 6 2.9246 -2.1878 5.8604 10 1 1.9020 -1.8209 5.7721 11 6 3.0161 -3.3057 6.9323 12 6 3.1297 -2.4777 8.2366 13 7 3.9607 -1.3151 7.8742 14 6 4.7094 -0.5674 8.7433 15 1 5.2863 0.2691 8.3775 16 6 4.7276 -0.8851 10.0945 17 7 4.0248 -1.9047 10.5404 18 14 5.7496 0.1344 11.2801 19 1 5.2838 1.5442 11.2491 20 1 5.5989 -0.4062 12.6549 21 1 7.1781 0.0762 10.8787 22 6 3.8513 -1.0906 6.4254 23 6 2.1504 -0.8909 3.6152 24 6 1.6967 -0.2376 2.4857 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9564 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 3.0868 -2.2026 0.1208 33 1 3.9095 -3.3656 2.1282 34 1 2.1147 -3.9185 6.9357 35 1 3.9037 -3.9202 6.7811 36 1 2.1432 -2.1512 8.5657 37 1 3.6163 -3.0633 9.0165 38 1 4.0372 -2.1264 11.4845 39 1 4.8360 -1.1631 5.9636 40 1 3.4213 -0.1075 6.2340 41 1 1.8842 -0.5238 4.5954 42 1 1.0754 0.6404 2.5832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228099518.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = -13.232441 kcal Electronic energy + Delta-G solvation = -20981.944135 eV Core-core repulsion = 17926.896565 eV Total energy + Delta-G solvation = -3055.047570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.36377 -39.63111 -37.99151 -35.62565 -34.26139 -31.98318 -31.30893 -29.86752 -28.96951 -27.92214 -26.54989 -24.25117 -23.79166 -22.18819 -21.57807 -20.85633 -19.29450 -19.04006 -17.26808 -16.79167 -16.61237 -16.32337 -15.63772 -15.54357 -15.26410 -14.99160 -14.40864 -14.37979 -14.22297 -14.13901 -13.68660 -13.58240 -13.32037 -13.12298 -12.99078 -12.74908 -12.65242 -12.39352 -12.08921 -12.05028 -12.01331 -11.81636 -11.65525 -11.54603 -11.44315 -11.32151 -10.79400 -9.92534 -9.01875 -8.94956 -7.82830 -5.28935 0.41774 0.48694 1.45605 1.49171 1.55708 2.17657 2.48127 2.81485 3.27856 3.57930 3.64380 3.81713 3.86629 3.90673 3.93715 4.07643 4.19602 4.39167 4.44358 4.46367 4.54759 4.60503 4.63045 4.75871 4.83196 4.85792 4.92589 4.98602 5.00176 5.04978 5.14914 5.16476 5.37918 5.39372 5.43629 5.44452 5.49677 5.52717 5.71289 5.76362 5.91863 6.23318 6.50506 7.04131 7.68950 8.32221 9.19311 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.003507 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.474334 B = 7981.656138 C = 8446.497913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.078 4.078 6 C -0.162 4.162 7 C 0.103 3.897 8 O -0.317 6.317 9 C 0.087 3.913 10 H 0.092 0.908 11 C -0.123 4.123 12 C 0.155 3.845 13 N -0.623 5.623 14 C -0.249 4.249 15 H 0.079 0.921 16 C -0.062 4.062 17 N -0.947 5.947 18 Si 0.985 3.015 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.277 1.277 22 C 0.120 3.880 23 C -0.218 4.218 24 C -0.078 4.078 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.001 0.999 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.023 0.977 40 H 0.029 0.971 41 H 0.122 0.878 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.769 1.688 -21.844 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.202 4.202 4 C -0.119 4.119 5 C -0.096 4.096 6 C -0.181 4.181 7 C 0.058 3.942 8 O -0.230 6.230 9 C 0.031 3.969 10 H 0.110 0.890 11 C -0.161 4.161 12 C 0.031 3.969 13 N -0.351 5.351 14 C -0.377 4.377 15 H 0.097 0.903 16 C -0.255 4.255 17 N -0.596 5.596 18 Si 0.812 3.188 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.006 4.006 23 C -0.236 4.236 24 C -0.096 4.096 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.019 0.981 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.139 0.861 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.589 1.541 -21.619 22.654 hybrid contribution 0.468 0.604 1.307 1.514 sum -6.121 2.145 -20.312 21.323 Atomic orbital electron populations 1.21862 0.93943 1.01932 1.02335 1.20089 0.96197 0.95929 0.94458 1.21870 1.00913 0.95094 1.02330 1.20065 0.99811 0.96953 0.95104 1.21159 0.95800 0.94306 0.98344 1.20662 1.04976 1.03067 0.89365 1.19431 0.94832 0.92527 0.87377 1.86108 1.67009 1.56723 1.13186 1.23324 0.97090 0.95618 0.80885 0.89006 1.23018 1.02948 0.96730 0.93450 1.21782 0.92837 0.87851 0.94477 1.44662 1.54079 1.34057 1.02266 1.19409 1.20735 1.08705 0.88867 0.90323 1.25668 1.01509 0.99963 0.98327 1.69988 1.45460 1.30391 1.13779 0.85067 0.78341 0.77884 0.77498 1.20295 1.21499 1.20317 1.21766 0.97186 0.96348 0.85327 1.21418 1.03651 0.98085 1.00465 1.20947 0.98352 0.99058 0.91261 0.92941 0.91050 0.92878 0.89233 0.93004 0.93148 0.90978 0.82800 0.84637 0.88452 0.91230 0.98123 0.89909 0.93947 0.95911 0.95283 0.86063 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.01 71.98 0.65 -1.23 16 2 C -0.05 -0.70 3.09 -11.54 -0.04 -0.74 16 3 C -0.14 -2.02 9.01 71.98 0.65 -1.37 16 4 C -0.12 -2.42 4.78 -19.85 -0.09 -2.52 16 5 C -0.08 -1.61 9.66 22.25 0.22 -1.40 16 6 C -0.16 -4.20 9.99 22.37 0.22 -3.97 16 7 C 0.10 3.22 6.67 22.51 0.15 3.37 16 8 O -0.32 -11.41 9.86 -92.41 -0.91 -12.32 16 9 C 0.09 3.30 2.74 31.78 0.09 3.39 16 10 H 0.09 3.18 6.25 -2.38 -0.01 3.17 16 11 C -0.12 -4.86 6.81 31.98 0.22 -4.64 16 12 C 0.16 7.80 5.89 86.86 0.51 8.31 16 13 N -0.62 -33.53 3.39 -691.98 -2.35 -35.88 16 14 C -0.25 -14.37 10.27 84.03 0.86 -13.51 16 15 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 16 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 17 N -0.95 -56.46 10.09 21.65 0.22 -56.24 16 18 Si 0.98 45.91 29.55 68.60 2.03 47.94 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 C 0.12 5.37 6.81 86.73 0.59 5.96 16 23 C -0.22 -6.31 8.91 22.37 0.20 -6.11 16 24 C -0.08 -1.84 8.70 22.25 0.19 -1.65 16 25 H 0.05 0.73 7.38 -2.39 -0.02 0.72 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 1.06 7.87 -2.39 -0.02 1.04 16 29 H 0.05 0.77 7.39 -2.38 -0.02 0.76 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.15 2.18 7.94 -2.91 -0.02 2.16 16 33 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.08 4.68 5.87 -2.39 -0.01 4.67 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 40 H 0.03 1.28 7.82 -2.39 -0.02 1.26 16 41 H 0.12 3.66 5.63 -2.91 -0.02 3.65 16 42 H 0.14 2.69 7.09 -2.91 -0.02 2.67 16 Total: -1.00 -65.55 334.54 4.85 -60.69 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.99 Total: 14.98 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 4.88 Total: -19.18 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.13 Total: -92.12 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.91 Total: -12.32 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -65.55 4.85 -60.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228099518.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.460 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds