Wall clock time and date at job start Mon Mar 30 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47304 * 2 1 4 4 C 1.50698 * 109.47475 * 120.00143 * 2 1 3 5 5 C 1.38267 * 119.94167 * 119.99689 * 4 2 1 6 6 C 1.38148 * 120.05124 * 180.02562 * 5 4 2 7 7 C 1.38732 * 119.94391 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05540 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99888 * 355.28479 * 8 7 6 10 10 H 1.09000 * 110.77712 * 322.66039 * 9 8 7 11 11 C 1.55154 * 110.71945 * 199.42740 * 9 8 7 12 12 C 1.55127 * 101.48529 * 205.96962 * 11 9 8 13 13 N 1.47429 * 104.72375 * 37.29311 * 12 11 9 14 14 C 1.36931 * 125.64922 * 155.81889 * 13 12 11 15 15 H 1.08002 * 119.99946 * 196.60978 * 14 13 12 16 16 C 1.38810 * 120.00255 * 16.61278 * 14 13 12 17 17 N 1.31629 * 119.99857 * 25.92054 * 16 14 13 18 18 Si 1.86796 * 120.00334 * 205.92390 * 16 14 13 19 19 H 1.48499 * 109.47571 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47247 * 59.99398 * 18 16 14 21 21 H 1.48502 * 109.47290 * 299.99980 * 18 16 14 22 22 C 1.47027 * 108.70129 * 335.55276 * 13 12 11 23 23 C 1.38727 * 119.89266 * 0.28059 * 7 6 5 24 24 C 1.38153 * 119.93773 * 359.42421 * 23 7 6 25 25 H 1.08999 * 109.46981 * 299.99972 * 1 2 3 26 26 H 1.08995 * 109.47361 * 59.99485 * 1 2 3 27 27 H 1.08999 * 109.47663 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46893 * 240.00573 * 2 1 3 29 29 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46976 * 300.00247 * 3 2 1 31 31 H 1.08998 * 109.46677 * 60.00441 * 3 2 1 32 32 H 1.07999 * 119.97777 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.02711 * 180.02562 * 6 5 4 34 34 H 1.09000 * 111.00553 * 324.20072 * 11 9 8 35 35 H 1.08996 * 111.01003 * 88.02243 * 11 9 8 36 36 H 1.09004 * 110.49712 * 278.45044 * 12 11 9 37 37 H 1.09002 * 110.34716 * 156.05405 * 12 11 9 38 38 H 0.96992 * 120.00011 * 6.39793 * 17 16 14 39 39 H 1.09000 * 109.87906 * 120.70228 * 22 13 12 40 40 H 1.08989 * 109.88200 * 241.71737 * 22 13 12 41 41 H 1.07993 * 120.03106 * 179.71857 * 23 7 6 42 42 H 1.08006 * 119.96972 * 180.31662 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8345 1.1021 6 6 3.2885 -2.4878 2.2285 7 6 2.9542 -2.0148 3.4891 8 8 3.4072 -2.6554 4.5987 9 6 4.1362 -3.8677 4.3957 10 1 3.7139 -4.4390 3.5691 11 6 4.1611 -4.7172 5.6938 12 6 5.4636 -5.5374 5.5013 13 7 6.4031 -4.6026 4.8555 14 6 7.7692 -4.6846 4.9022 15 1 8.3710 -3.8282 4.6362 16 6 8.3806 -5.8686 5.2913 17 7 7.7571 -7.0161 5.1269 18 14 10.0879 -5.8333 6.0482 19 1 10.5133 -7.2180 6.3750 20 1 10.0625 -5.0179 7.2891 21 1 11.0451 -5.2357 5.0829 22 6 5.6303 -3.5714 4.1477 23 6 2.1522 -0.8899 3.6151 24 6 1.6984 -0.2366 2.4856 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5137 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.0868 -2.2026 0.1205 33 1 3.9097 -3.3656 2.1278 34 1 4.2234 -4.0804 6.5763 35 1 3.2923 -5.3730 5.7484 36 1 5.2813 -6.3976 4.8570 37 1 5.8538 -5.8611 6.4662 38 1 6.9126 -7.0454 4.6509 39 1 5.8825 -2.5856 4.5386 40 1 5.8467 -3.6134 3.0804 41 1 1.8868 -0.5224 4.5953 42 1 1.0782 0.6423 2.5832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228099520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:03 Heat of formation + Delta-G solvation = -2.962440 kcal Electronic energy + Delta-G solvation = -20998.319799 eV Core-core repulsion = 17943.717570 eV Total energy + Delta-G solvation = -3054.602230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.24609 -38.49919 -36.63534 -34.72665 -32.49065 -31.01305 -29.45339 -28.70049 -27.49212 -27.33593 -24.45724 -23.24641 -22.61476 -20.77389 -20.30678 -19.70098 -18.07128 -17.61410 -16.04785 -15.78265 -15.33117 -14.67423 -14.40839 -14.04627 -13.95685 -13.69258 -13.51625 -13.29438 -13.17326 -12.93135 -12.73756 -12.50465 -12.30342 -11.95250 -11.57479 -11.27418 -11.19913 -10.94383 -10.87323 -10.75146 -10.61683 -10.56355 -10.23727 -10.09525 -9.99924 -9.51989 -8.95002 -8.48553 -7.93628 -7.00193 -6.11570 -3.19517 1.39043 1.48354 3.40543 3.49318 3.54008 3.71334 3.79268 4.56526 4.57022 4.64961 4.89404 4.99867 5.02468 5.07575 5.13152 5.26448 5.33554 5.34853 5.40872 5.42889 5.48909 5.52331 5.61827 5.66584 5.75463 5.77514 5.98215 6.01867 6.04280 6.05922 6.12725 6.26154 6.34702 6.42841 6.51996 6.55984 6.65291 6.86961 6.90968 6.94814 7.67143 7.74829 8.44204 8.97447 9.77062 10.29678 11.20385 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.003426 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.587169 B = 8171.001366 C = 8499.627146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.204 4.204 7 C 0.136 3.864 8 O -0.305 6.305 9 C 0.071 3.929 10 H 0.078 0.922 11 C -0.127 4.127 12 C 0.145 3.855 13 N -0.600 5.600 14 C -0.335 4.335 15 H 0.066 0.934 16 C -0.025 4.025 17 N -0.920 5.920 18 Si 1.067 2.933 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.293 1.293 22 C 0.118 3.882 23 C -0.156 4.156 24 C -0.078 4.078 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.060 0.940 38 H 0.268 0.732 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.127 0.873 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.839 12.642 -7.891 21.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.125 4.125 5 C -0.095 4.095 6 C -0.223 4.223 7 C 0.090 3.910 8 O -0.218 6.218 9 C 0.015 3.985 10 H 0.096 0.904 11 C -0.165 4.165 12 C 0.019 3.981 13 N -0.329 5.329 14 C -0.463 4.463 15 H 0.084 0.916 16 C -0.227 4.227 17 N -0.561 5.561 18 Si 0.897 3.103 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.220 1.220 22 C -0.008 4.008 23 C -0.175 4.175 24 C -0.096 4.096 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.139 0.861 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.145 0.855 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.563 11.752 -6.977 19.255 hybrid contribution -1.014 0.829 -0.993 1.644 sum -14.577 12.581 -7.971 20.840 Atomic orbital electron populations 1.21858 0.94658 1.01917 1.01640 1.20023 0.95645 0.95854 0.95408 1.21867 1.01361 0.95291 1.01627 1.19679 1.00987 0.97278 0.94569 1.20834 0.96124 0.94518 0.97987 1.21409 1.05478 1.03319 0.92072 1.19100 0.93210 0.92584 0.86077 1.86134 1.68154 1.37783 1.29726 1.23576 0.92160 0.83089 0.99703 0.90433 1.22994 0.99522 0.97821 0.96187 1.21634 0.86869 0.91970 0.97612 1.44447 1.01903 1.29267 1.57267 1.19778 0.79748 0.98784 1.47994 0.91626 1.25807 1.05129 0.90879 1.00856 1.70798 1.18593 1.25175 1.41560 0.83494 0.74752 0.75628 0.76469 1.20986 1.22018 1.21961 1.21772 0.88879 0.94436 0.95704 1.20403 1.01330 0.96217 0.99517 1.20687 0.98820 0.98870 0.91194 0.92540 0.92662 0.92591 0.90742 0.92496 0.92658 0.92530 0.86124 0.85116 0.90336 0.91010 0.95144 0.92174 0.91995 0.94554 0.95499 0.85468 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.01 37.15 0.33 -0.78 16 2 C -0.05 -0.45 3.09 -91.77 -0.28 -0.74 16 3 C -0.14 -1.17 9.01 37.16 0.33 -0.83 16 4 C -0.12 -1.43 4.78 -104.60 -0.50 -1.93 16 5 C -0.08 -0.97 9.66 -39.60 -0.38 -1.36 16 6 C -0.20 -3.04 8.81 -39.43 -0.35 -3.38 16 7 C 0.14 2.15 6.63 -39.22 -0.26 1.89 16 8 O -0.31 -5.40 9.87 -19.44 -0.19 -5.59 16 9 C 0.07 1.31 2.75 -24.90 -0.07 1.25 16 10 H 0.08 1.34 6.50 -51.93 -0.34 1.00 16 11 C -0.13 -2.37 6.82 -24.47 -0.17 -2.54 16 12 C 0.14 3.38 5.26 -2.41 -0.01 3.37 16 13 N -0.60 -15.67 3.30 -169.93 -0.56 -16.23 16 14 C -0.34 -9.68 10.05 -15.06 -0.15 -9.83 16 15 H 0.07 1.89 7.95 -52.49 -0.42 1.47 16 16 C -0.03 -0.73 5.12 -17.43 -0.09 -0.82 16 17 N -0.92 -27.85 12.89 55.49 0.72 -27.13 16 18 Si 1.07 25.56 29.99 -169.99 -5.10 20.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.12 2.61 6.57 -3.06 -0.02 2.59 16 23 C -0.16 -2.11 9.99 -39.43 -0.39 -2.50 16 24 C -0.08 -0.90 8.70 -39.61 -0.34 -1.24 16 25 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 32 H 0.12 1.30 7.94 -52.49 -0.42 0.89 16 33 H 0.13 2.01 5.40 -52.48 -0.28 1.72 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 37 H 0.06 1.52 7.89 -51.93 -0.41 1.11 16 38 H 0.27 8.08 5.86 -40.82 -0.24 7.84 16 39 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.03 0.60 7.54 -51.94 -0.39 0.21 16 41 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.12 1.13 7.09 -52.48 -0.37 0.75 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -31.41 334.18 -9.02 -40.43 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.57 Total: -0.11 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.35 Total: -16.86 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.15 Total: -43.36 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.19 Total: -5.59 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.10 Total: 20.46 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.41 -9.02 -40.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228099520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.468 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds