Wall clock time and date at job start Mon Mar 30 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47304 * 2 1 4 4 C 1.50698 * 109.47475 * 120.00143 * 2 1 3 5 5 C 1.38267 * 119.94167 * 119.99689 * 4 2 1 6 6 C 1.38148 * 120.05124 * 180.02562 * 5 4 2 7 7 C 1.38732 * 119.94391 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05540 * 180.02562 * 7 6 5 9 9 C 1.42906 * 116.99888 * 355.28479 * 8 7 6 10 10 H 1.09000 * 110.77712 * 322.66039 * 9 8 7 11 11 C 1.55154 * 110.71945 * 199.42740 * 9 8 7 12 12 C 1.55127 * 101.48529 * 205.96962 * 11 9 8 13 13 N 1.47429 * 104.72375 * 37.29311 * 12 11 9 14 14 C 1.36931 * 125.64922 * 155.81889 * 13 12 11 15 15 H 1.08002 * 119.99946 * 196.60978 * 14 13 12 16 16 C 1.38810 * 120.00255 * 16.61278 * 14 13 12 17 17 N 1.31629 * 119.99857 * 25.92054 * 16 14 13 18 18 Si 1.86796 * 120.00334 * 205.92390 * 16 14 13 19 19 H 1.48499 * 109.47571 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47247 * 59.99398 * 18 16 14 21 21 H 1.48502 * 109.47290 * 299.99980 * 18 16 14 22 22 C 1.47027 * 108.70129 * 335.55276 * 13 12 11 23 23 C 1.38727 * 119.89266 * 0.28059 * 7 6 5 24 24 C 1.38153 * 119.93773 * 359.42421 * 23 7 6 25 25 H 1.08999 * 109.46981 * 299.99972 * 1 2 3 26 26 H 1.08995 * 109.47361 * 59.99485 * 1 2 3 27 27 H 1.08999 * 109.47663 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46893 * 240.00573 * 2 1 3 29 29 H 1.08999 * 109.46752 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46976 * 300.00247 * 3 2 1 31 31 H 1.08998 * 109.46677 * 60.00441 * 3 2 1 32 32 H 1.07999 * 119.97777 * 359.97438 * 5 4 2 33 33 H 1.08004 * 120.02711 * 180.02562 * 6 5 4 34 34 H 1.09000 * 111.00553 * 324.20072 * 11 9 8 35 35 H 1.08996 * 111.01003 * 88.02243 * 11 9 8 36 36 H 1.09004 * 110.49712 * 278.45044 * 12 11 9 37 37 H 1.09002 * 110.34716 * 156.05405 * 12 11 9 38 38 H 0.96992 * 120.00011 * 6.39793 * 17 16 14 39 39 H 1.09000 * 109.87906 * 120.70228 * 22 13 12 40 40 H 1.08989 * 109.88200 * 241.71737 * 22 13 12 41 41 H 1.07993 * 120.03106 * 179.71857 * 23 7 6 42 42 H 1.08006 * 119.96972 * 180.31662 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8272 -1.8345 1.1021 6 6 3.2885 -2.4878 2.2285 7 6 2.9542 -2.0148 3.4891 8 8 3.4072 -2.6554 4.5987 9 6 4.1362 -3.8677 4.3957 10 1 3.7139 -4.4390 3.5691 11 6 4.1611 -4.7172 5.6938 12 6 5.4636 -5.5374 5.5013 13 7 6.4031 -4.6026 4.8555 14 6 7.7692 -4.6846 4.9022 15 1 8.3710 -3.8282 4.6362 16 6 8.3806 -5.8686 5.2913 17 7 7.7571 -7.0161 5.1269 18 14 10.0879 -5.8333 6.0482 19 1 10.5133 -7.2180 6.3750 20 1 10.0625 -5.0179 7.2891 21 1 11.0451 -5.2357 5.0829 22 6 5.6303 -3.5714 4.1477 23 6 2.1522 -0.8899 3.6151 24 6 1.6984 -0.2366 2.4856 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8932 -0.5137 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.0868 -2.2026 0.1205 33 1 3.9097 -3.3656 2.1278 34 1 4.2234 -4.0804 6.5763 35 1 3.2923 -5.3730 5.7484 36 1 5.2813 -6.3976 4.8570 37 1 5.8538 -5.8611 6.4662 38 1 6.9126 -7.0454 4.6509 39 1 5.8825 -2.5856 4.5386 40 1 5.8467 -3.6134 3.0804 41 1 1.8868 -0.5224 4.5953 42 1 1.0782 0.6423 2.5832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228099520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:02 Heat of formation + Delta-G solvation = -19.559433 kcal Electronic energy + Delta-G solvation = -20999.039499 eV Core-core repulsion = 17943.717570 eV Total energy + Delta-G solvation = -3055.321929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45185 -39.76216 -38.20046 -35.68210 -34.45131 -32.07134 -31.24634 -29.87808 -29.15239 -27.93030 -26.44590 -24.37605 -23.64666 -22.24472 -22.05005 -20.72834 -19.69839 -19.34440 -17.20838 -16.97713 -16.75521 -16.05302 -15.75426 -15.49679 -15.37679 -15.16004 -14.88791 -14.42860 -14.28783 -14.11006 -13.97265 -13.75707 -13.39712 -13.07699 -12.76132 -12.72673 -12.61902 -12.55719 -12.17630 -12.05025 -11.90944 -11.72886 -11.69812 -11.65093 -11.51834 -11.43935 -10.62684 -9.97125 -9.14407 -9.03658 -8.38541 -5.44084 0.36690 0.43836 1.55642 1.63747 1.83320 2.07796 2.60301 2.76609 3.12223 3.40082 3.49747 3.72455 3.76528 3.82001 3.85552 3.96943 4.16932 4.26877 4.35549 4.37160 4.39265 4.47203 4.59111 4.68026 4.69654 4.79185 4.85772 4.91148 4.93444 4.97724 5.03873 5.05555 5.14786 5.17135 5.33332 5.41133 5.43834 5.44782 5.56396 5.72491 5.86155 6.23903 6.41964 6.80163 7.60348 8.15908 8.92945 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034281 B = 0.003426 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.587169 B = 8171.001366 C = 8499.627146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.143 4.143 4 C -0.117 4.117 5 C -0.086 4.086 6 C -0.217 4.217 7 C 0.103 3.897 8 O -0.314 6.314 9 C 0.089 3.911 10 H 0.091 0.909 11 C -0.112 4.112 12 C 0.147 3.853 13 N -0.624 5.624 14 C -0.353 4.353 15 H 0.058 0.942 16 C -0.073 4.073 17 N -0.943 5.943 18 Si 1.119 2.881 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.274 1.274 22 C 0.119 3.881 23 C -0.159 4.159 24 C -0.073 4.073 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.019 0.981 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.138 0.862 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 14.413 -8.593 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.117 4.117 5 C -0.103 4.103 6 C -0.236 4.236 7 C 0.058 3.942 8 O -0.227 6.227 9 C 0.033 3.967 10 H 0.109 0.891 11 C -0.150 4.150 12 C 0.022 3.978 13 N -0.352 5.352 14 C -0.482 4.482 15 H 0.076 0.924 16 C -0.269 4.269 17 N -0.586 5.586 18 Si 0.942 3.058 19 H -0.212 1.212 20 H -0.206 1.206 21 H -0.200 1.200 22 C -0.007 4.007 23 C -0.178 4.178 24 C -0.091 4.091 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.156 0.844 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.043 13.555 -7.698 21.664 hybrid contribution -0.642 0.395 -0.894 1.170 sum -15.686 13.951 -8.593 22.682 Atomic orbital electron populations 1.21847 0.93450 1.01873 1.02715 1.20098 0.96561 0.96117 0.94160 1.21865 1.00702 0.94753 1.02734 1.20064 0.99410 0.96394 0.95821 1.21089 0.96263 0.94955 0.98043 1.21413 1.06019 1.03474 0.92714 1.19400 0.95148 0.93923 0.85753 1.86091 1.68318 1.37478 1.30843 1.23243 0.89830 0.83838 0.99823 0.89134 1.22870 0.98089 0.97675 0.96336 1.21559 0.88549 0.92077 0.95643 1.44712 1.01847 1.30325 1.58325 1.20035 0.81459 0.98613 1.48044 0.92447 1.27259 1.08465 0.90373 1.00847 1.70902 1.18759 1.26015 1.42927 0.82814 0.70860 0.75682 0.76395 1.21235 1.20645 1.19974 1.21816 0.91300 0.92766 0.94813 1.20667 1.00725 0.95479 1.00892 1.21031 0.98327 0.99274 0.90487 0.92033 0.91105 0.93209 0.90296 0.93553 0.91032 0.92036 0.84567 0.86415 0.90196 0.87485 0.96282 0.94857 0.93163 0.95763 0.95995 0.84371 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.01 71.98 0.65 -1.09 16 2 C -0.05 -0.76 3.09 -11.54 -0.04 -0.80 16 3 C -0.14 -1.89 9.01 71.99 0.65 -1.24 16 4 C -0.12 -2.40 4.78 -19.85 -0.09 -2.50 16 5 C -0.09 -2.07 9.66 22.26 0.22 -1.86 16 6 C -0.22 -6.43 8.81 22.37 0.20 -6.23 16 7 C 0.10 3.17 6.63 22.50 0.15 3.32 16 8 O -0.31 -10.99 9.87 -92.46 -0.91 -11.90 16 9 C 0.09 3.30 2.75 31.78 0.09 3.39 16 10 H 0.09 3.11 6.50 -2.39 -0.02 3.09 16 11 C -0.11 -4.12 6.82 32.06 0.22 -3.90 16 12 C 0.15 7.06 5.26 86.93 0.46 7.52 16 13 N -0.62 -33.52 3.30 -691.55 -2.28 -35.80 16 14 C -0.35 -20.93 10.05 84.03 0.84 -20.08 16 15 H 0.06 3.40 7.95 -2.91 -0.02 3.38 16 16 C -0.07 -4.31 5.12 84.86 0.43 -3.87 16 17 N -0.94 -58.49 12.89 21.65 0.28 -58.21 16 18 Si 1.12 51.98 29.99 68.60 2.06 54.04 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 22 C 0.12 5.38 6.57 86.73 0.57 5.95 16 23 C -0.16 -4.04 9.99 22.37 0.22 -3.82 16 24 C -0.07 -1.50 8.70 22.25 0.19 -1.31 16 25 H 0.06 0.70 7.39 -2.39 -0.02 0.68 16 26 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 1.13 7.87 -2.39 -0.02 1.11 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.75 7.38 -2.39 -0.02 0.73 16 32 H 0.14 2.77 7.94 -2.91 -0.02 2.75 16 33 H 0.12 3.70 5.40 -2.91 -0.02 3.68 16 34 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 35 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.02 0.97 6.76 -2.38 -0.02 0.95 16 37 H 0.03 1.74 7.89 -2.39 -0.02 1.73 16 38 H 0.26 16.07 5.86 -92.71 -0.54 15.52 16 39 H 0.02 1.15 8.06 -2.39 -0.02 1.13 16 40 H 0.02 1.01 7.54 -2.39 -0.02 0.99 16 41 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 42 H 0.15 2.21 7.09 -2.91 -0.02 2.18 16 Total: -1.00 -69.03 334.18 5.11 -63.91 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.21 Total: 14.47 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 4.76 Total: -26.51 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -2.00 Total: -94.01 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.91 Total: -11.90 kcal Atomic # 14 Polarization: 51.98 SS G_CDS: 2.06 Total: 54.04 kcal Total: -69.03 5.11 -63.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228099520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.354 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds