Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47472 * 2 1 4 4 C 1.50696 * 109.47046 * 120.00371 * 2 1 3 5 5 C 1.38269 * 119.94702 * 119.99544 * 4 2 1 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08999 * 109.47281 * 300.00440 * 1 2 3 25 25 H 1.08998 * 109.47328 * 59.99502 * 1 2 3 26 26 H 1.08997 * 109.48026 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46795 * 240.00014 * 2 1 3 28 28 H 1.08997 * 109.47177 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46989 * 299.99872 * 3 2 1 30 30 H 1.08998 * 109.46876 * 59.99940 * 3 2 1 31 31 H 1.07996 * 119.97067 * 0.02562 * 5 4 2 32 32 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 33 33 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 34 34 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 35 35 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 36 36 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 37 37 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 38 38 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 40 40 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 41 41 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 42 42 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8346 1.1022 6 6 3.2892 -2.4874 2.2286 7 6 2.9548 -2.0144 3.4892 8 8 3.4086 -2.6545 4.5988 9 6 4.3264 -3.7310 4.3969 10 6 5.2142 -4.0361 5.6117 11 7 4.1509 -4.9363 6.0954 12 6 4.7192 -6.1738 6.6466 13 6 3.6377 -6.9543 7.3481 14 1 2.6292 -6.5694 7.3816 15 6 3.9359 -8.1593 7.9482 16 7 5.1642 -8.6277 7.9079 17 14 2.5955 -9.1264 8.8183 18 1 3.1700 -10.3774 9.3755 19 1 2.0299 -8.3073 9.9203 20 1 1.5209 -9.4638 7.8506 21 6 3.7452 -5.1214 4.6897 22 6 2.1521 -0.8899 3.6152 23 6 1.6969 -0.2376 2.4857 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.0874 -2.2022 0.1206 32 1 3.9096 -3.3656 2.1279 33 1 4.8684 -3.6634 3.4537 34 1 5.3793 -3.1730 6.2565 35 1 6.1383 -4.5541 5.3548 36 1 5.5079 -5.9264 7.3572 37 1 5.1344 -6.7747 5.8376 38 1 5.3742 -9.4753 8.3304 39 1 4.2773 -5.9290 4.1869 40 1 2.6653 -5.1781 4.5533 41 1 1.8868 -0.5223 4.5954 42 1 1.0751 0.6401 2.5833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228100661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = 17.806209 kcal Electronic energy + Delta-G solvation = -20484.333732 eV Core-core repulsion = 17430.632098 eV Total energy + Delta-G solvation = -3053.701633 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.48878 -39.19912 -37.20551 -34.70838 -32.85480 -31.11478 -29.50843 -28.62586 -27.37026 -25.64389 -25.29600 -23.44249 -22.68969 -21.61428 -20.38211 -19.31425 -17.91728 -16.39836 -16.09376 -15.73071 -15.46293 -14.85534 -14.73620 -14.37391 -14.07524 -13.84626 -13.65010 -13.32497 -13.30648 -12.92594 -12.79554 -12.53846 -12.17890 -11.97256 -11.70857 -11.50384 -11.27817 -11.07158 -10.94676 -10.90241 -10.69908 -10.47313 -10.32881 -10.01000 -9.67149 -9.28411 -9.00839 -8.43735 -7.97926 -7.86245 -6.04182 -4.05226 1.33236 1.43029 3.27083 3.34408 3.37484 3.41744 3.73202 4.42418 4.51488 4.60185 4.69699 4.80029 4.85333 4.95729 4.98530 5.16343 5.22164 5.30976 5.33177 5.37780 5.42512 5.54590 5.58925 5.68489 5.73630 5.83222 5.86298 5.97472 6.00345 6.01545 6.07719 6.15458 6.28731 6.35242 6.41025 6.59556 6.60176 6.82521 7.12681 7.62792 7.64124 7.84883 8.08717 8.44564 9.02274 9.58930 11.06925 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.002952 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.504584 B = 9481.636702 C = 9780.483455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.144 4.144 4 C -0.125 4.125 5 C -0.077 4.077 6 C -0.209 4.209 7 C 0.136 3.864 8 O -0.276 6.276 9 C 0.045 3.955 10 C 0.000 4.000 11 N -0.456 5.456 12 C 0.156 3.844 13 C -0.504 4.504 14 H 0.063 0.937 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.006 4.006 22 C -0.153 4.153 23 C -0.076 4.076 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.004 0.996 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 17.476 -16.851 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.201 4.201 4 C -0.126 4.126 5 C -0.095 4.095 6 C -0.228 4.228 7 C 0.090 3.910 8 O -0.189 6.189 9 C -0.012 4.012 10 C -0.129 4.129 11 N -0.179 5.179 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.728 3.272 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.135 4.135 22 C -0.172 4.172 23 C -0.094 4.094 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.022 0.978 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.147 0.853 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.759 17.535 -16.031 24.231 hybrid contribution 0.143 -1.281 -0.110 1.293 sum -4.616 16.254 -16.141 23.368 Atomic orbital electron populations 1.21868 0.94592 1.02036 1.01692 1.20020 0.95732 0.95799 0.95352 1.21863 1.01215 0.95349 1.01699 1.19685 1.00991 0.97305 0.94571 1.20808 0.96315 0.94524 0.97893 1.21302 1.06079 1.03305 0.92072 1.19166 0.93858 0.91943 0.86060 1.86188 1.58687 1.45162 1.28850 1.23701 0.91491 0.86907 0.99149 1.24005 0.95205 0.99069 0.94658 1.69089 1.22057 1.13850 1.12892 1.20304 0.95796 0.85701 0.95195 1.21061 0.95823 1.03597 1.33821 0.91875 1.25004 0.95691 0.97543 0.96484 1.69942 1.18517 1.20585 1.45063 0.86519 0.81717 0.79005 0.79950 1.21331 1.20100 1.20244 1.24244 1.02493 0.94043 0.92761 1.20437 1.01406 0.95669 0.99677 1.20715 0.98553 0.98962 0.91164 0.92487 0.92651 0.92507 0.90785 0.92591 0.92656 0.92490 0.86176 0.85207 0.89695 0.89708 0.90459 0.95168 0.97848 0.92851 0.90620 0.89994 0.85254 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.00 37.16 0.33 -0.73 16 2 C -0.05 -0.40 3.09 -91.78 -0.28 -0.69 16 3 C -0.14 -1.02 9.01 37.15 0.33 -0.68 16 4 C -0.13 -1.30 4.78 -104.60 -0.50 -1.80 16 5 C -0.08 -0.85 9.66 -39.60 -0.38 -1.23 16 6 C -0.21 -2.66 9.03 -39.43 -0.36 -3.02 16 7 C 0.14 1.98 6.68 -39.21 -0.26 1.71 16 8 O -0.28 -4.70 10.19 -19.43 -0.20 -4.90 16 9 C 0.04 0.72 4.06 -26.19 -0.11 0.61 16 10 C 0.00 0.00 7.52 -7.54 -0.06 -0.06 16 11 N -0.46 -10.26 6.32 -246.11 -1.55 -11.82 16 12 C 0.16 4.12 4.57 -4.97 -0.02 4.10 16 13 C -0.50 -14.67 9.39 -34.44 -0.32 -14.99 16 14 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 22 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 23 C -0.08 -0.82 8.70 -39.60 -0.34 -1.16 16 24 H 0.06 0.41 7.38 -51.93 -0.38 0.03 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.55 7.87 -51.93 -0.41 0.14 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 31 H 0.12 1.07 7.94 -52.49 -0.42 0.65 16 32 H 0.13 1.53 5.89 -52.49 -0.31 1.22 16 33 H 0.09 1.13 5.90 -51.93 -0.31 0.82 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 36 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 1.39 7.42 -51.93 -0.39 1.00 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 42 H 0.12 1.07 7.09 -52.49 -0.37 0.70 16 LS Contribution 342.36 15.07 5.16 5.16 Total: -1.00 -31.46 342.36 -10.07 -41.53 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.68 Total: -1.77 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.52 Total: -19.02 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.82 Total: -38.10 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.46 -10.07 -41.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228100661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.338 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds