Wall clock time and date at job start Mon Mar 30 2020 02:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47472 * 2 1 4 4 C 1.50696 * 109.47046 * 120.00371 * 2 1 3 5 5 C 1.38269 * 119.94702 * 119.99544 * 4 2 1 6 6 C 1.38145 * 120.05611 * 179.97438 * 5 4 2 7 7 C 1.38733 * 119.94613 * 0.02562 * 6 5 4 8 8 O 1.35903 * 120.05821 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99481 * 5.71890 * 8 7 6 10 10 C 1.53522 * 114.16319 * 156.75104 * 9 8 7 11 11 N 1.47479 * 87.93053 * 87.81277 * 10 9 8 12 12 C 1.46907 * 110.99724 * 138.70260 * 11 10 9 13 13 C 1.50701 * 109.47018 * 169.99816 * 12 11 10 14 14 H 1.07994 * 119.99880 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00063 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00155 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47137 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47320 * 299.99947 * 17 15 13 20 20 H 1.48502 * 109.47213 * 59.99788 * 17 15 13 21 21 C 1.47471 * 87.83993 * 27.00812 * 11 10 9 22 22 C 1.38735 * 119.88832 * 0.27118 * 7 6 5 23 23 C 1.38151 * 119.94110 * 359.47348 * 22 7 6 24 24 H 1.08999 * 109.47281 * 300.00440 * 1 2 3 25 25 H 1.08998 * 109.47328 * 59.99502 * 1 2 3 26 26 H 1.08997 * 109.48026 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46795 * 240.00014 * 2 1 3 28 28 H 1.08997 * 109.47177 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46989 * 299.99872 * 3 2 1 30 30 H 1.08998 * 109.46876 * 59.99940 * 3 2 1 31 31 H 1.07996 * 119.97067 * 0.02562 * 5 4 2 32 32 H 1.07992 * 120.02865 * 179.97438 * 6 5 4 33 33 H 1.08994 * 113.26195 * 23.80059 * 9 8 7 34 34 H 1.08996 * 113.47329 * 333.04215 * 10 9 8 35 35 H 1.09001 * 113.46674 * 202.58069 * 10 9 8 36 36 H 1.08996 * 109.47104 * 49.99664 * 12 11 10 37 37 H 1.08997 * 109.46896 * 289.99467 * 12 11 10 38 38 H 0.97002 * 120.00501 * 179.97438 * 16 15 13 39 39 H 1.09004 * 113.47622 * 87.75306 * 21 11 10 40 40 H 1.08999 * 113.47770 * 218.22309 * 21 11 10 41 41 H 1.07992 * 120.02884 * 179.72809 * 22 7 6 42 42 H 1.08000 * 119.96895 * 180.23327 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 2.8270 -1.8346 1.1022 6 6 3.2892 -2.4874 2.2286 7 6 2.9548 -2.0144 3.4892 8 8 3.4086 -2.6545 4.5988 9 6 4.3264 -3.7310 4.3969 10 6 5.2142 -4.0361 5.6117 11 7 4.1509 -4.9363 6.0954 12 6 4.7192 -6.1738 6.6466 13 6 3.6377 -6.9543 7.3481 14 1 2.6292 -6.5694 7.3816 15 6 3.9359 -8.1593 7.9482 16 7 5.1642 -8.6277 7.9079 17 14 2.5955 -9.1264 8.8183 18 1 3.1700 -10.3774 9.3755 19 1 2.0299 -8.3073 9.9203 20 1 1.5209 -9.4638 7.8506 21 6 3.7452 -5.1214 4.6897 22 6 2.1521 -0.8899 3.6152 23 6 1.6969 -0.2376 2.4857 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 3.0874 -2.2022 0.1206 32 1 3.9096 -3.3656 2.1279 33 1 4.8684 -3.6634 3.4537 34 1 5.3793 -3.1730 6.2565 35 1 6.1383 -4.5541 5.3548 36 1 5.5079 -5.9264 7.3572 37 1 5.1344 -6.7747 5.8376 38 1 5.3742 -9.4753 8.3304 39 1 4.2773 -5.9290 4.1869 40 1 2.6653 -5.1781 4.5533 41 1 1.8868 -0.5223 4.5954 42 1 1.0751 0.6401 2.5833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228100661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:07 Heat of formation + Delta-G solvation = -1.700983 kcal Electronic energy + Delta-G solvation = -20485.179627 eV Core-core repulsion = 17430.632098 eV Total energy + Delta-G solvation = -3054.547529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.72983 -40.35285 -38.37145 -35.56686 -34.97759 -32.07418 -31.20628 -29.66603 -27.90840 -27.41725 -26.87651 -24.63430 -23.64887 -23.24690 -21.43852 -20.38575 -19.10779 -18.55411 -17.25754 -16.91315 -16.73407 -16.41120 -15.84271 -15.75783 -15.28752 -15.05284 -14.81135 -14.35592 -14.26245 -14.14185 -13.83947 -13.69185 -13.53531 -13.15548 -13.03966 -12.92763 -12.62721 -12.40960 -12.29135 -11.96602 -11.94149 -11.66171 -11.55957 -11.43796 -11.34060 -11.23653 -10.64110 -9.91600 -9.62991 -8.96759 -8.25695 -6.35898 0.42540 0.49228 1.37441 1.40818 1.49190 2.09412 2.37217 2.80591 3.06097 3.30259 3.31929 3.72813 3.84918 3.89466 3.98977 4.22180 4.26931 4.40095 4.40655 4.46396 4.48242 4.57044 4.58490 4.66811 4.70850 4.87478 4.88471 4.92702 5.00547 5.02875 5.06234 5.10812 5.20143 5.37386 5.45409 5.45905 5.49226 5.54567 5.74743 5.77339 5.92025 6.04767 6.41168 6.54189 6.77425 7.33503 8.85071 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036809 B = 0.002952 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.504584 B = 9481.636702 C = 9780.483455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C -0.143 4.143 4 C -0.119 4.119 5 C -0.082 4.082 6 C -0.214 4.214 7 C 0.103 3.897 8 O -0.302 6.302 9 C 0.071 3.929 10 C -0.001 4.001 11 N -0.487 5.487 12 C 0.172 3.828 13 C -0.530 4.530 14 H 0.053 0.947 15 C 0.004 3.996 16 N -0.931 5.931 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.271 1.271 20 H -0.268 1.268 21 C -0.009 4.009 22 C -0.166 4.166 23 C -0.075 4.075 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.048 0.952 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.004 0.996 37 H -0.011 1.011 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 18.454 -18.666 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.120 4.120 5 C -0.100 4.100 6 C -0.232 4.232 7 C 0.058 3.942 8 O -0.215 6.215 9 C 0.014 3.986 10 C -0.130 4.130 11 N -0.209 5.209 12 C 0.045 3.955 13 C -0.568 4.568 14 H 0.071 0.929 15 C -0.195 4.195 16 N -0.571 5.571 17 Si 0.793 3.207 18 H -0.202 1.202 19 H -0.196 1.196 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.185 4.185 23 C -0.093 4.093 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.022 0.978 37 H 0.006 0.994 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.735 18.537 -17.863 26.374 hybrid contribution 0.412 -1.471 0.362 1.570 sum -5.323 17.066 -17.501 25.017 Atomic orbital electron populations 1.21867 0.94015 1.01761 1.02508 1.20087 0.96135 0.96207 0.94386 1.21855 1.00930 0.94728 1.02496 1.20064 0.99706 0.96805 0.95392 1.21137 0.95945 0.94488 0.98421 1.21445 1.06262 1.03659 0.91885 1.19439 0.95641 0.93030 0.86095 1.86139 1.59331 1.45457 1.30608 1.23439 0.90445 0.85157 0.99570 1.24079 0.95147 0.98186 0.95630 1.68993 1.24010 1.12557 1.15385 1.19971 0.94425 0.87075 0.94027 1.21370 0.96014 1.04610 1.34848 0.92915 1.25898 0.98145 0.98443 0.96970 1.70048 1.20375 1.21093 1.45631 0.85440 0.78794 0.77613 0.78811 1.20221 1.19582 1.19321 1.24275 1.02081 0.96550 0.90926 1.20632 1.01596 0.95709 1.00541 1.20974 0.98299 0.99315 0.90728 0.92465 0.91135 0.93324 0.89831 0.93045 0.91200 0.92441 0.83813 0.84513 0.86144 0.89424 0.89097 0.97817 0.99363 0.92465 0.90044 0.91015 0.85412 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.00 71.98 0.65 -1.08 16 2 C -0.05 -0.65 3.09 -11.54 -0.04 -0.68 16 3 C -0.14 -1.60 9.01 71.98 0.65 -0.95 16 4 C -0.12 -2.19 4.78 -19.85 -0.09 -2.29 16 5 C -0.08 -1.62 9.66 22.25 0.22 -1.40 16 6 C -0.21 -5.14 9.03 22.37 0.20 -4.94 16 7 C 0.10 2.94 6.68 22.51 0.15 3.09 16 8 O -0.30 -10.28 10.19 -92.46 -0.94 -11.22 16 9 C 0.07 2.24 4.06 30.94 0.13 2.37 16 10 C 0.00 -0.05 7.52 83.58 0.63 0.58 16 11 N -0.49 -22.49 6.32 -932.93 -5.89 -28.38 16 12 C 0.17 9.41 4.57 85.56 0.39 9.80 16 13 C -0.53 -31.64 9.39 25.60 0.24 -31.40 16 14 H 0.05 3.18 7.81 -2.91 -0.02 3.15 16 15 C 0.00 0.22 5.46 84.65 0.46 0.68 16 16 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 17 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 21 C -0.01 -0.34 7.56 83.58 0.63 0.29 16 22 C -0.17 -4.21 9.99 22.37 0.22 -3.99 16 23 C -0.08 -1.50 8.70 22.26 0.19 -1.31 16 24 H 0.06 0.68 7.38 -2.39 -0.02 0.66 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.96 7.87 -2.38 -0.02 0.94 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.64 7.39 -2.39 -0.02 0.62 16 31 H 0.14 2.10 7.94 -2.91 -0.02 2.08 16 32 H 0.14 2.97 5.89 -2.91 -0.02 2.95 16 33 H 0.12 2.96 5.90 -2.39 -0.01 2.95 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.09 3.03 7.91 -2.39 -0.02 3.01 16 36 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 37 H -0.01 -0.64 7.30 -2.39 -0.02 -0.66 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.08 3.02 7.42 -2.38 -0.02 3.00 16 40 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 42 H 0.15 2.18 7.09 -2.91 -0.02 2.16 16 Total: -1.00 -68.67 342.36 1.09 -67.57 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.99 Total: 11.97 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 4.63 Total: -31.23 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -5.61 Total: -84.69 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.94 Total: -11.22 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -68.67 1.09 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228100661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.873 kcal (2) G-P(sol) polarization free energy of solvation -68.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds