Wall clock time and date at job start Mon Mar 30 2020 02:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 C 1.50697 * 109.47487 * 120.00150 * 2 1 3 5 5 C 1.38173 * 120.02641 * 300.27877 * 4 2 1 6 6 C 1.38243 * 120.05303 * 180.29503 * 5 4 2 7 7 C 1.38296 * 120.11345 * 359.67885 * 6 5 4 8 8 C 1.38125 * 120.05132 * 0.04347 * 7 6 5 9 9 C 1.38712 * 120.03053 * 120.00133 * 4 2 1 10 10 O 1.35901 * 120.05524 * 359.97438 * 9 4 2 11 11 C 1.42902 * 117.00111 * 174.36845 * 10 9 4 12 12 H 1.08997 * 110.63770 * 322.10667 * 11 10 9 13 13 C 1.55153 * 110.87106 * 198.85969 * 11 10 9 14 14 C 1.55133 * 101.48554 * 205.90129 * 13 11 10 15 15 N 1.47424 * 104.71949 * 37.29270 * 14 13 11 16 16 C 1.36936 * 125.64302 * 155.81942 * 15 14 13 17 17 H 1.08002 * 119.99976 * 179.69232 * 16 15 14 18 18 C 1.38814 * 120.00400 * 359.69605 * 16 15 14 19 19 N 1.31617 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46835 * 269.99988 * 20 18 16 22 22 H 1.48507 * 109.47141 * 29.99460 * 20 18 16 23 23 H 1.48501 * 109.47281 * 149.99620 * 20 18 16 24 24 C 1.47014 * 108.70628 * 335.55745 * 15 14 13 25 25 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47336 * 299.99852 * 1 2 3 27 27 H 1.09002 * 109.47449 * 59.99799 * 1 2 3 28 28 H 1.09001 * 109.47000 * 240.00554 * 2 1 3 29 29 H 1.09006 * 109.47172 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47443 * 299.99891 * 3 2 1 31 31 H 1.09004 * 109.47495 * 60.00636 * 3 2 1 32 32 H 1.07996 * 119.97263 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.94350 * 179.69984 * 6 5 4 34 34 H 1.07994 * 119.97186 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.02445 * 179.97438 * 8 7 6 36 36 H 1.09002 * 111.00556 * 324.13518 * 13 11 10 37 37 H 1.08994 * 111.00731 * 87.95477 * 13 11 10 38 38 H 1.09000 * 110.49245 * 278.45373 * 14 13 11 39 39 H 1.08998 * 110.34653 * 156.05992 * 14 13 11 40 40 H 0.96998 * 120.00081 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.88499 * 120.70374 * 24 15 14 42 42 H 1.09004 * 109.88335 * 241.87155 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6942 -0.2422 2.4856 6 6 2.1598 -0.8899 3.6147 7 6 2.9594 -2.0115 3.4911 8 6 3.2955 -2.4868 2.2385 9 6 2.8299 -1.8382 1.1038 10 8 3.1589 -2.3043 -0.1297 11 6 4.0822 -3.3935 -0.1868 12 1 4.8536 -3.2835 0.5754 13 6 4.7170 -3.5066 -1.5980 14 6 5.0850 -5.0127 -1.6513 15 7 3.9788 -5.6936 -0.9541 16 6 3.6053 -6.9987 -1.1339 17 1 2.7804 -7.4071 -0.5689 18 6 4.2869 -7.7969 -2.0424 19 7 5.2918 -7.2991 -2.7313 20 14 3.7769 -9.5770 -2.2881 21 1 4.5277 -10.4420 -1.3430 22 1 2.3201 -9.7142 -2.0341 23 1 4.0772 -9.9900 -3.6826 24 6 3.3470 -4.7412 -0.0294 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0699 0.6334 2.5847 33 1 1.8984 -0.5196 4.5950 34 1 3.3215 -2.5159 4.3747 35 1 3.9203 -3.3624 2.1426 36 1 3.9948 -3.2499 -2.3730 37 1 5.6086 -2.8847 -1.6763 38 1 6.0276 -5.1937 -1.1346 39 1 5.1473 -5.3513 -2.6854 40 1 5.7678 -7.8567 -3.3664 41 1 2.2939 -4.6209 -0.2833 42 1 3.4448 -5.0992 0.9955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228280724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:07 Heat of formation + Delta-G solvation = 2.640354 kcal Electronic energy + Delta-G solvation = -21495.111944 eV Core-core repulsion = 18440.752669 eV Total energy + Delta-G solvation = -3054.359274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.27516 -38.07170 -36.04166 -35.29215 -32.33018 -30.06761 -29.70141 -28.94245 -27.31734 -27.12710 -24.60687 -23.45659 -22.22064 -20.48076 -20.15038 -19.71235 -17.85257 -17.04072 -16.06688 -15.47773 -15.20960 -14.76038 -14.44716 -14.13960 -13.92602 -13.73492 -13.56474 -13.12636 -12.73192 -12.47259 -12.32543 -12.04262 -11.92488 -11.76453 -11.60373 -11.43755 -11.12448 -11.01973 -10.83720 -10.60531 -10.57463 -10.35822 -10.21931 -10.04836 -9.82820 -9.61810 -8.73147 -8.70002 -7.91745 -6.90158 -5.69936 -3.12357 1.42329 1.58710 3.38478 3.43106 3.45182 3.52479 3.86671 4.46192 4.70040 4.84760 5.07357 5.15468 5.18047 5.24311 5.32164 5.33395 5.44757 5.47078 5.57747 5.60241 5.64037 5.64630 5.80526 5.81613 5.85486 6.01036 6.13638 6.23845 6.26522 6.26819 6.39594 6.47636 6.49744 6.56814 6.59721 6.65074 6.69663 6.99224 7.41209 7.57581 7.73390 7.81782 8.29798 9.16652 9.76972 10.40255 11.34268 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.004151 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.110274 B = 6744.033840 C = 7058.878636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.140 4.140 4 C -0.114 4.114 5 C -0.082 4.082 6 C -0.166 4.166 7 C -0.085 4.085 8 C -0.205 4.205 9 C 0.142 3.858 10 O -0.302 6.302 11 C 0.070 3.930 12 H 0.075 0.925 13 C -0.134 4.134 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.288 1.288 22 H -0.281 1.281 23 H -0.289 1.289 24 C 0.119 3.881 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.016 0.984 39 H 0.115 0.885 40 H 0.253 0.747 41 H 0.035 0.965 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 15.823 8.419 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.071 4.071 3 C -0.197 4.197 4 C -0.115 4.115 5 C -0.100 4.100 6 C -0.184 4.184 7 C -0.103 4.103 8 C -0.224 4.224 9 C 0.096 3.904 10 O -0.215 6.215 11 C 0.014 3.986 12 H 0.093 0.907 13 C -0.173 4.173 14 C 0.027 3.973 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.215 1.215 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.034 0.966 39 H 0.132 0.868 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.183 15.693 8.086 18.399 hybrid contribution -0.052 -1.158 0.265 1.189 sum -5.236 14.536 8.351 17.562 Atomic orbital electron populations 1.21837 0.94678 1.01990 1.01330 1.19950 0.95502 0.95509 0.96129 1.21835 1.01195 0.95337 1.01369 1.19196 1.01281 0.95574 0.95468 1.20739 0.98836 0.99239 0.91180 1.20943 1.01501 0.97712 0.98257 1.20912 0.96923 0.95819 0.96657 1.21427 1.05556 1.02931 0.92495 1.18917 0.94183 0.92584 0.84694 1.86129 1.60913 1.49296 1.25139 1.23644 0.89816 0.85026 1.00120 0.90742 1.23218 0.99351 1.00998 0.93708 1.22058 0.89149 0.84242 1.01807 1.44378 1.35439 1.08139 1.44846 1.19090 1.12589 0.84786 1.18726 0.90391 1.24790 0.97971 0.98687 0.99065 1.69748 1.23419 1.34801 1.29201 0.86040 0.77942 0.84137 0.77193 1.21569 1.20631 1.21548 1.21731 0.96339 0.88696 0.94023 0.92513 0.92874 0.92607 0.89451 0.92680 0.92611 0.92865 0.85978 0.86421 0.86177 0.85076 0.90793 0.91566 0.96586 0.86780 0.93596 0.94728 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.00 37.16 0.33 -1.19 16 2 C -0.05 -0.65 3.06 -91.78 -0.28 -0.93 16 3 C -0.14 -1.43 9.01 37.16 0.33 -1.10 16 4 C -0.11 -1.58 4.79 -104.47 -0.50 -2.08 16 5 C -0.08 -0.97 8.71 -39.60 -0.34 -1.32 16 6 C -0.17 -1.92 10.04 -39.56 -0.40 -2.32 16 7 C -0.08 -1.08 10.04 -39.60 -0.40 -1.48 16 8 C -0.21 -3.08 8.78 -39.43 -0.35 -3.43 16 9 C 0.14 2.27 6.60 -39.22 -0.26 2.01 16 10 O -0.30 -5.35 8.65 -19.43 -0.17 -5.52 16 11 C 0.07 1.31 2.76 -24.90 -0.07 1.24 16 12 H 0.07 1.30 6.57 -51.93 -0.34 0.96 16 13 C -0.13 -2.62 6.83 -24.46 -0.17 -2.78 16 14 C 0.15 3.69 5.91 -2.41 -0.01 3.67 16 15 N -0.60 -15.62 3.39 -169.94 -0.58 -16.20 16 16 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.72 10.08 55.49 0.56 -26.16 16 20 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.12 2.59 6.52 -3.07 -0.02 2.57 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.50 7.38 -51.93 -0.38 0.12 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 1.24 6.99 -51.93 -0.36 0.87 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.48 7.41 -51.93 -0.38 0.10 16 32 H 0.12 1.17 7.10 -52.49 -0.37 0.79 16 33 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.13 2.01 5.33 -52.49 -0.28 1.73 16 36 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.11 3.09 5.85 -51.93 -0.30 2.78 16 40 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 42 H 0.02 0.53 7.44 -51.93 -0.39 0.14 16 LS Contribution 332.19 15.07 5.01 5.01 Total: -1.00 -29.77 332.19 -9.16 -38.93 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.58 Total: 0.86 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.38 Total: -13.94 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -0.02 Total: -42.36 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.17 Total: -5.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.77 -9.16 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228280724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.571 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds