Wall clock time and date at job start Mon Mar 30 2020 02:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 C 1.50697 * 109.47487 * 120.00150 * 2 1 3 5 5 C 1.38173 * 120.02641 * 300.27877 * 4 2 1 6 6 C 1.38243 * 120.05303 * 180.29503 * 5 4 2 7 7 C 1.38296 * 120.11345 * 359.67885 * 6 5 4 8 8 C 1.38125 * 120.05132 * 0.04347 * 7 6 5 9 9 C 1.38712 * 120.03053 * 120.00133 * 4 2 1 10 10 O 1.35901 * 120.05524 * 359.97438 * 9 4 2 11 11 C 1.42902 * 117.00111 * 174.36845 * 10 9 4 12 12 H 1.08997 * 110.63770 * 322.10667 * 11 10 9 13 13 C 1.55153 * 110.87106 * 198.85969 * 11 10 9 14 14 C 1.55133 * 101.48554 * 205.90129 * 13 11 10 15 15 N 1.47424 * 104.71949 * 37.29270 * 14 13 11 16 16 C 1.36936 * 125.64302 * 155.81942 * 15 14 13 17 17 H 1.08002 * 119.99976 * 179.69232 * 16 15 14 18 18 C 1.38814 * 120.00400 * 359.69605 * 16 15 14 19 19 N 1.31617 * 119.99695 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46835 * 269.99988 * 20 18 16 22 22 H 1.48507 * 109.47141 * 29.99460 * 20 18 16 23 23 H 1.48501 * 109.47281 * 149.99620 * 20 18 16 24 24 C 1.47014 * 108.70628 * 335.55745 * 15 14 13 25 25 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47336 * 299.99852 * 1 2 3 27 27 H 1.09002 * 109.47449 * 59.99799 * 1 2 3 28 28 H 1.09001 * 109.47000 * 240.00554 * 2 1 3 29 29 H 1.09006 * 109.47172 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.47443 * 299.99891 * 3 2 1 31 31 H 1.09004 * 109.47495 * 60.00636 * 3 2 1 32 32 H 1.07996 * 119.97263 * 359.97438 * 5 4 2 33 33 H 1.07999 * 119.94350 * 179.69984 * 6 5 4 34 34 H 1.07994 * 119.97186 * 180.02562 * 7 6 5 35 35 H 1.08001 * 120.02445 * 179.97438 * 8 7 6 36 36 H 1.09002 * 111.00556 * 324.13518 * 13 11 10 37 37 H 1.08994 * 111.00731 * 87.95477 * 13 11 10 38 38 H 1.09000 * 110.49245 * 278.45373 * 14 13 11 39 39 H 1.08998 * 110.34653 * 156.05992 * 14 13 11 40 40 H 0.96998 * 120.00081 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.88499 * 120.70374 * 24 15 14 42 42 H 1.09004 * 109.88335 * 241.87155 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6942 -0.2422 2.4856 6 6 2.1598 -0.8899 3.6147 7 6 2.9594 -2.0115 3.4911 8 6 3.2955 -2.4868 2.2385 9 6 2.8299 -1.8382 1.1038 10 8 3.1589 -2.3043 -0.1297 11 6 4.0822 -3.3935 -0.1868 12 1 4.8536 -3.2835 0.5754 13 6 4.7170 -3.5066 -1.5980 14 6 5.0850 -5.0127 -1.6513 15 7 3.9788 -5.6936 -0.9541 16 6 3.6053 -6.9987 -1.1339 17 1 2.7804 -7.4071 -0.5689 18 6 4.2869 -7.7969 -2.0424 19 7 5.2918 -7.2991 -2.7313 20 14 3.7769 -9.5770 -2.2881 21 1 4.5277 -10.4420 -1.3430 22 1 2.3201 -9.7142 -2.0341 23 1 4.0772 -9.9900 -3.6826 24 6 3.3470 -4.7412 -0.0294 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0699 0.6334 2.5847 33 1 1.8984 -0.5196 4.5950 34 1 3.3215 -2.5159 4.3747 35 1 3.9203 -3.3624 2.1426 36 1 3.9948 -3.2499 -2.3730 37 1 5.6086 -2.8847 -1.6763 38 1 6.0276 -5.1937 -1.1346 39 1 5.1473 -5.3513 -2.6854 40 1 5.7678 -7.8567 -3.3664 41 1 2.2939 -4.6209 -0.2833 42 1 3.4448 -5.0992 0.9955 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228280724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:06 Heat of formation + Delta-G solvation = -12.440414 kcal Electronic energy + Delta-G solvation = -21495.765895 eV Core-core repulsion = 18440.752669 eV Total energy + Delta-G solvation = -3055.013225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.46624 -39.45540 -37.64253 -36.22192 -34.31861 -31.45365 -30.98113 -30.31346 -29.01986 -27.93914 -26.56236 -24.49992 -23.42563 -22.21336 -21.65420 -20.83215 -19.09474 -19.02387 -17.33396 -16.81452 -16.65379 -16.44944 -15.67825 -15.53697 -15.16257 -14.94688 -14.77325 -14.34934 -14.16373 -14.01616 -13.68013 -13.35764 -13.13009 -12.97595 -12.91231 -12.79738 -12.67258 -12.57033 -12.23089 -12.05114 -12.01042 -11.88034 -11.70248 -11.48502 -11.47759 -11.30760 -10.80617 -9.73027 -9.04963 -8.97043 -7.83072 -5.29208 0.41834 0.54299 1.45474 1.47524 1.56487 2.18177 2.47591 2.85191 3.27772 3.57870 3.64120 3.74777 3.89755 3.90259 3.99805 4.16124 4.28057 4.33939 4.37195 4.52687 4.53671 4.57915 4.62397 4.76968 4.82557 4.84683 4.92111 4.94951 5.00215 5.01857 5.16050 5.23976 5.34056 5.39585 5.43643 5.51204 5.52911 5.63102 5.67590 5.71309 5.95718 6.23255 6.51541 7.03990 7.68687 8.31936 9.19066 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026062 B = 0.004151 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.110274 B = 6744.033840 C = 7058.878636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.135 4.135 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.092 4.092 8 C -0.221 4.221 9 C 0.105 3.895 10 O -0.312 6.312 11 C 0.089 3.911 12 H 0.088 0.912 13 C -0.121 4.121 14 C 0.155 3.845 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.078 0.922 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.284 1.284 22 H -0.271 1.271 23 H -0.289 1.289 24 C 0.120 3.880 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.001 0.999 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.021 0.979 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 17.580 10.150 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.074 4.074 3 C -0.192 4.192 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.174 4.174 7 C -0.110 4.110 8 C -0.240 4.240 9 C 0.061 3.939 10 O -0.225 6.225 11 C 0.032 3.968 12 H 0.106 0.894 13 C -0.159 4.159 14 C 0.030 3.970 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.211 1.211 22 H -0.196 1.196 23 H -0.215 1.215 24 C -0.006 4.006 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.019 0.981 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -6.324 17.476 9.838 21.029 hybrid contribution 0.243 -1.633 -0.178 1.660 sum -6.081 15.844 9.661 19.528 Atomic orbital electron populations 1.21813 0.93437 1.01277 1.02917 1.19972 0.96508 0.96410 0.94462 1.21795 1.00533 0.93982 1.02865 1.19511 1.00660 0.94931 0.96987 1.21112 0.98530 0.99893 0.90270 1.21378 0.99711 0.96530 0.99762 1.21222 0.96983 0.96410 0.96363 1.21470 1.06126 1.02936 0.93453 1.19260 0.96361 0.94233 0.84092 1.86091 1.61023 1.48717 1.26707 1.23284 0.89858 0.83959 0.99669 0.89432 1.23022 1.00587 0.97987 0.94302 1.21837 0.88391 0.87179 0.99563 1.44661 1.36038 1.08307 1.45966 1.19434 1.12897 0.86177 1.19083 0.90404 1.25646 0.98107 1.02766 0.98827 1.69987 1.24177 1.35955 1.29466 0.85008 0.77963 0.79063 0.76834 1.21068 1.19633 1.21523 1.21793 0.95698 0.89870 0.93225 0.94352 0.90926 0.91394 0.92223 0.93692 0.91442 0.91039 0.82969 0.83077 0.84092 0.86306 0.91238 0.88536 0.98145 0.89806 0.93964 0.96079 0.95381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.00 71.98 0.65 -2.05 16 2 C -0.05 -1.29 3.06 -11.54 -0.04 -1.32 16 3 C -0.13 -2.44 9.01 71.98 0.65 -1.79 16 4 C -0.12 -3.14 4.79 -19.77 -0.09 -3.23 16 5 C -0.08 -1.64 8.71 22.26 0.19 -1.45 16 6 C -0.16 -3.05 10.04 22.28 0.22 -2.82 16 7 C -0.09 -2.14 10.04 22.26 0.22 -1.91 16 8 C -0.22 -6.52 8.78 22.36 0.20 -6.32 16 9 C 0.11 3.33 6.60 22.50 0.15 3.48 16 10 O -0.31 -11.22 8.65 -92.43 -0.80 -12.02 16 11 C 0.09 3.38 2.76 31.78 0.09 3.46 16 12 H 0.09 3.08 6.57 -2.39 -0.02 3.07 16 13 C -0.12 -4.77 6.83 32.06 0.22 -4.55 16 14 C 0.16 7.79 5.91 86.93 0.51 8.31 16 15 N -0.62 -33.46 3.39 -691.56 -2.35 -35.80 16 16 C -0.25 -14.30 10.27 84.03 0.86 -13.43 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 19 N -0.95 -56.36 10.08 21.65 0.22 -56.15 16 20 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 C 0.12 5.40 6.52 86.73 0.57 5.97 16 25 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.13 7.38 -2.39 -0.02 1.11 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.71 6.99 -2.39 -0.02 1.69 16 29 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.03 7.41 -2.38 -0.02 1.01 16 32 H 0.15 2.16 7.10 -2.91 -0.02 2.14 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.12 3.69 5.33 -2.91 -0.02 3.68 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 39 H 0.08 4.74 5.85 -2.39 -0.01 4.73 16 40 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 41 H 0.02 1.00 8.06 -2.39 -0.02 0.98 16 42 H 0.03 1.24 7.44 -2.38 -0.02 1.22 16 Total: -1.00 -66.04 332.19 4.96 -61.08 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.99 Total: 15.59 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 4.87 Total: -20.67 kcal Atomic # 7 Polarization: -89.82 SS G_CDS: -2.13 Total: -91.95 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -0.80 Total: -12.02 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -66.04 4.96 -61.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228280724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.642 kcal (2) G-P(sol) polarization free energy of solvation -66.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds