Wall clock time and date at job start Mon Mar 30 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47088 * 2 1 4 4 C 1.50703 * 109.47501 * 119.99936 * 2 1 3 5 5 C 1.38168 * 120.02506 * 300.00196 * 4 2 1 6 6 C 1.38247 * 120.05135 * 179.97438 * 5 4 2 7 7 C 1.38284 * 120.11478 * 0.02961 * 6 5 4 8 8 C 1.38120 * 120.05578 * 0.02562 * 7 6 5 9 9 C 1.38710 * 120.02736 * 119.72346 * 4 2 1 10 10 O 1.35899 * 120.05833 * 0.02562 * 9 4 2 11 11 C 1.42900 * 117.00202 * 185.12149 * 10 9 4 12 12 H 1.08997 * 110.64375 * 37.99076 * 11 10 9 13 13 C 1.55158 * 110.72219 * 161.33531 * 11 10 9 14 14 C 1.54903 * 101.57966 * 153.86356 * 13 11 10 15 15 N 1.47425 * 104.83591 * 322.98385 * 14 13 11 16 16 C 1.36933 * 125.65471 * 204.16457 * 15 14 13 17 17 H 1.08001 * 120.00065 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99722 * 359.96397 * 16 15 14 19 19 N 1.31622 * 120.00147 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99823 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47387 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47282 * 120.00367 * 20 18 16 23 23 H 1.48509 * 109.46872 * 239.99610 * 20 18 16 24 24 C 1.47028 * 108.70052 * 24.13379 * 15 14 13 25 25 H 1.08995 * 109.47242 * 60.00267 * 1 2 3 26 26 H 1.09000 * 109.46902 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46949 * 299.99478 * 1 2 3 28 28 H 1.09004 * 109.47160 * 239.99841 * 2 1 3 29 29 H 1.08999 * 109.47263 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46935 * 299.99907 * 3 2 1 31 31 H 1.08995 * 109.47121 * 60.00034 * 3 2 1 32 32 H 1.07992 * 119.97328 * 359.97438 * 5 4 2 33 33 H 1.08003 * 119.94024 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.97258 * 179.97438 * 7 6 5 35 35 H 1.08002 * 120.02826 * 179.97438 * 8 7 6 36 36 H 1.08997 * 111.00033 * 271.93610 * 13 11 10 37 37 H 1.09003 * 111.00195 * 35.78739 * 13 11 10 38 38 H 1.09008 * 110.36371 * 204.15310 * 14 13 11 39 39 H 1.08997 * 110.46496 * 81.87707 * 14 13 11 40 40 H 0.97001 * 120.00020 * 180.02562 * 19 18 16 41 41 H 1.09001 * 109.88254 * 239.52137 * 24 15 14 42 42 H 1.09002 * 110.01090 * 118.42569 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6990 -0.2388 2.4856 6 6 2.1591 -0.8904 3.6148 7 6 2.9545 -2.0148 3.4912 8 6 3.2915 -2.4896 2.2387 9 6 2.8252 -1.8415 1.1038 10 8 3.1503 -2.3103 -0.1296 11 6 3.8743 -3.5410 -0.1859 12 1 3.5195 -4.2310 0.5797 13 6 3.7663 -4.1776 -1.5968 14 6 5.0667 -5.0169 -1.6596 15 7 6.0771 -4.2003 -0.9628 16 6 7.4316 -4.2761 -1.1494 17 1 8.0910 -3.6309 -0.5878 18 6 7.9570 -5.1823 -2.0602 19 7 7.1534 -5.9691 -2.7440 20 14 9.8048 -5.2862 -2.3142 21 1 10.4819 -4.3029 -1.4312 22 1 10.2738 -6.6556 -1.9823 23 1 10.1274 -4.9825 -3.7316 24 6 5.3896 -3.2903 -0.0349 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.0784 0.6394 2.5847 33 1 1.8977 -0.5199 4.5950 34 1 3.3130 -2.5218 4.3749 35 1 3.9131 -3.3676 2.1428 36 1 2.8856 -4.8154 -1.6711 37 1 3.7582 -3.4109 -2.3716 38 1 5.3616 -5.1824 -2.6959 39 1 4.9304 -5.9697 -1.1480 40 1 7.5207 -6.6026 -3.3802 41 1 5.6215 -2.2562 -0.2898 42 1 5.6995 -3.4980 0.9893 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228280752.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:10 Heat of formation + Delta-G solvation = -12.689734 kcal Electronic energy + Delta-G solvation = -21497.859025 eV Core-core repulsion = 18442.834988 eV Total energy + Delta-G solvation = -3055.024037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46709 -39.45905 -37.64411 -36.22199 -34.32048 -31.45777 -30.98055 -30.31703 -29.02777 -27.93971 -26.56394 -24.49862 -23.42633 -22.21117 -21.65645 -20.83203 -19.09509 -19.02646 -17.33414 -16.81702 -16.65811 -16.44788 -15.67646 -15.53699 -15.16289 -14.94650 -14.77394 -14.34762 -14.16467 -14.01590 -13.68859 -13.35980 -13.13087 -12.97674 -12.91235 -12.80899 -12.67636 -12.57221 -12.23408 -12.02328 -12.00598 -11.88391 -11.70396 -11.48880 -11.47709 -11.30910 -10.81199 -9.72962 -9.04889 -8.97121 -7.83578 -5.29395 0.41925 0.54351 1.45476 1.46555 1.57127 2.18284 2.47347 2.85250 3.27568 3.58002 3.63774 3.74835 3.89790 3.90254 3.99708 4.16146 4.28062 4.33953 4.37188 4.52404 4.53717 4.58264 4.62429 4.77110 4.82739 4.84697 4.92102 4.94985 5.00097 5.01848 5.16073 5.23991 5.34084 5.39736 5.43659 5.51381 5.53006 5.63171 5.67599 5.71140 5.95774 6.22837 6.51592 7.03865 7.68452 8.31711 9.18984 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.004154 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.236430 B = 6739.014957 C = 7050.763315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.055 4.055 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.080 4.080 6 C -0.156 4.156 7 C -0.092 4.092 8 C -0.221 4.221 9 C 0.105 3.895 10 O -0.312 6.312 11 C 0.089 3.911 12 H 0.088 0.912 13 C -0.120 4.120 14 C 0.155 3.845 15 N -0.622 5.622 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.061 4.061 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.288 1.288 24 C 0.120 3.880 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.001 0.999 40 H 0.250 0.750 41 H 0.021 0.979 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 11.784 10.244 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 C -0.194 4.194 4 C -0.121 4.121 5 C -0.098 4.098 6 C -0.174 4.174 7 C -0.110 4.110 8 C -0.240 4.240 9 C 0.060 3.940 10 O -0.225 6.225 11 C 0.033 3.967 12 H 0.106 0.894 13 C -0.159 4.159 14 C 0.031 3.969 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.096 0.904 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.006 4.006 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.019 0.981 40 H 0.060 0.940 41 H 0.039 0.961 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -14.371 11.769 9.945 21.070 hybrid contribution 1.457 -0.765 -0.212 1.659 sum -12.914 11.004 9.733 19.560 Atomic orbital electron populations 1.21794 0.92910 1.01610 1.02865 1.19974 0.96855 0.96063 0.94463 1.21811 1.00236 0.94478 1.02913 1.19509 1.00383 0.95214 0.96986 1.21111 0.98640 0.99786 0.90270 1.21376 0.99797 0.96449 0.99760 1.21219 0.96869 0.96525 0.96367 1.21474 1.05821 1.03239 0.93449 1.19263 0.95747 0.94847 0.84098 1.86095 1.70478 1.39283 1.26684 1.23292 0.90031 0.83778 0.99649 0.89388 1.22982 0.99387 0.99206 0.94309 1.21776 0.84966 0.90653 0.99536 1.44665 1.02441 1.42148 1.45708 1.19471 0.81931 1.17068 1.19002 0.90381 1.25646 1.02715 0.98135 0.98878 1.70004 1.33905 1.26092 1.29608 0.84941 0.79113 0.77376 0.77443 1.19338 1.21489 1.21492 1.21797 0.91962 0.93623 0.93222 0.91440 0.93691 0.91041 0.92227 0.94350 0.91396 0.90929 0.82974 0.83080 0.84089 0.86295 0.88500 0.91250 0.89914 0.98134 0.93977 0.96119 0.95339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.01 71.98 0.65 -1.80 16 2 C -0.05 -1.29 3.06 -11.54 -0.04 -1.32 16 3 C -0.14 -2.70 9.01 71.98 0.65 -2.05 16 4 C -0.12 -3.14 4.79 -19.77 -0.09 -3.23 16 5 C -0.08 -1.64 8.71 22.26 0.19 -1.45 16 6 C -0.16 -3.04 10.04 22.28 0.22 -2.82 16 7 C -0.09 -2.13 10.04 22.25 0.22 -1.91 16 8 C -0.22 -6.51 8.78 22.37 0.20 -6.31 16 9 C 0.11 3.33 6.60 22.51 0.15 3.48 16 10 O -0.31 -11.21 8.64 -92.41 -0.80 -12.01 16 11 C 0.09 3.38 2.77 31.79 0.09 3.47 16 12 H 0.09 3.09 6.58 -2.39 -0.02 3.07 16 13 C -0.12 -4.76 6.81 31.98 0.22 -4.54 16 14 C 0.16 7.81 5.89 86.85 0.51 8.32 16 15 N -0.62 -33.43 3.39 -691.96 -2.35 -35.78 16 16 C -0.25 -14.22 10.27 84.03 0.86 -13.36 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.06 -3.49 5.49 84.86 0.47 -3.02 16 19 N -0.95 -56.40 10.09 21.65 0.22 -56.18 16 20 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 C 0.12 5.39 6.52 86.73 0.57 5.95 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.07 1.03 7.39 -2.39 -0.02 1.01 16 28 H 0.06 1.71 6.99 -2.38 -0.02 1.69 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.13 7.39 -2.39 -0.02 1.11 16 32 H 0.15 2.16 7.10 -2.91 -0.02 2.14 16 33 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 35 H 0.12 3.69 5.32 -2.91 -0.02 3.67 16 36 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.08 4.68 5.87 -2.38 -0.01 4.67 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 42 H 0.03 1.26 7.43 -2.39 -0.02 1.24 16 Total: -1.00 -66.10 332.16 4.95 -61.15 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.99 Total: 15.42 kcal Atomic # 6 Polarization: -25.46 SS G_CDS: 4.86 Total: -20.59 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -2.13 Total: -91.96 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.80 Total: -12.01 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -66.10 4.95 -61.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228280752.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.456 kcal (2) G-P(sol) polarization free energy of solvation -66.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds