Wall clock time and date at job start Mon Mar 30 2020 02:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.50700 * 109.47447 * 120.00084 * 2 1 3 5 5 C 1.38164 * 120.02912 * 300.32328 * 4 2 1 6 6 C 1.38246 * 120.05684 * 180.29458 * 5 4 2 7 7 C 1.38294 * 120.10730 * 359.67465 * 6 5 4 8 8 C 1.38118 * 120.05990 * 0.02562 * 7 6 5 9 9 C 1.38719 * 120.02688 * 119.99700 * 4 2 1 10 10 O 1.35903 * 120.05520 * 359.97438 * 9 4 2 11 11 C 1.42900 * 116.99821 * 185.53694 * 10 9 4 12 12 C 1.53507 * 114.17074 * 156.73773 * 11 10 9 13 13 N 1.47475 * 87.93272 * 87.80901 * 12 11 10 14 14 C 1.46904 * 110.99918 * 138.70609 * 13 12 11 15 15 C 1.50697 * 109.47257 * 170.00172 * 14 13 12 16 16 H 1.07995 * 120.00320 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99833 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99693 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47194 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47437 * 300.00002 * 19 17 15 22 22 H 1.48503 * 109.47446 * 60.00482 * 19 17 15 23 23 C 1.47479 * 87.83687 * 27.01431 * 13 12 11 24 24 H 1.09007 * 109.46983 * 299.99820 * 1 2 3 25 25 H 1.08996 * 109.47447 * 59.99477 * 1 2 3 26 26 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46983 * 240.00180 * 2 1 3 28 28 H 1.09000 * 109.47500 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47260 * 300.00638 * 3 2 1 30 30 H 1.08998 * 109.46952 * 60.00311 * 3 2 1 31 31 H 1.07998 * 119.97166 * 359.97438 * 5 4 2 32 32 H 1.07995 * 119.94521 * 179.69854 * 6 5 4 33 33 H 1.08002 * 119.96480 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.03022 * 180.02562 * 8 7 6 35 35 H 1.09003 * 113.25625 * 23.77946 * 11 10 9 36 36 H 1.09002 * 113.47269 * 333.04316 * 12 11 10 37 37 H 1.08995 * 113.53327 * 202.58713 * 12 11 10 38 38 H 1.09002 * 109.47178 * 49.99771 * 14 13 12 39 39 H 1.09002 * 109.46946 * 289.99933 * 14 13 12 40 40 H 0.97006 * 119.99761 * 180.02562 * 18 17 15 41 41 H 1.08997 * 113.47939 * 87.75216 * 23 13 12 42 42 H 1.09004 * 113.47297 * 218.22094 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6935 -0.2428 2.4856 6 6 2.1591 -0.8905 3.6147 7 6 2.9594 -2.0116 3.4911 8 6 3.2959 -2.4866 2.2386 9 6 2.8299 -1.8383 1.1037 10 8 3.1587 -2.3044 -0.1298 11 6 3.8797 -3.5368 -0.1867 12 6 3.7380 -4.2871 -1.5184 13 7 4.8858 -3.5077 -2.0183 14 6 5.7946 -4.3536 -2.8036 15 6 6.8134 -3.4870 -3.4979 16 1 6.7881 -2.4150 -3.3691 17 6 7.7778 -4.0627 -4.2976 18 7 7.8083 -5.3680 -4.4548 19 14 9.0402 -2.9884 -5.1588 20 1 9.9597 -3.8436 -5.9515 21 1 8.3460 -2.0365 -6.0627 22 1 9.8190 -2.2311 -4.1462 23 6 5.3450 -3.3933 -0.6215 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.0686 0.6324 2.5847 32 1 1.8971 -0.5206 4.5950 33 1 3.3215 -2.5160 4.3747 34 1 3.9205 -3.3624 2.1426 35 1 3.7351 -4.1612 0.6950 36 1 2.8061 -4.0716 -2.0411 37 1 3.9397 -5.3553 -1.4397 38 1 5.2227 -4.9088 -3.5471 39 1 6.3040 -5.0529 -2.1405 40 1 8.4871 -5.7731 -5.0171 41 1 5.9759 -4.2228 -0.3024 42 1 5.7751 -2.4202 -0.3842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228282069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:11 Heat of formation + Delta-G solvation = 18.927124 kcal Electronic energy + Delta-G solvation = -21097.245872 eV Core-core repulsion = 18043.592846 eV Total energy + Delta-G solvation = -3053.653027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56841 -39.11208 -36.62617 -35.33357 -32.86668 -30.12865 -29.87465 -28.83554 -27.11995 -25.64126 -25.28033 -23.61679 -22.49976 -21.53780 -20.05193 -19.45071 -17.83791 -16.37324 -16.14807 -15.61722 -15.43316 -14.86061 -14.73409 -14.36361 -13.97279 -13.79886 -13.74866 -13.44477 -13.06480 -12.80489 -12.37249 -12.13362 -12.04404 -11.97951 -11.73024 -11.65376 -11.18302 -11.12739 -10.93261 -10.64011 -10.58456 -10.41765 -10.31601 -10.04373 -9.67166 -9.28492 -8.83320 -8.43773 -8.01638 -7.86406 -6.04292 -4.05271 1.32129 1.47680 3.26395 3.34296 3.37465 3.41616 3.75703 4.42341 4.63239 4.68060 4.78891 4.81895 4.97675 5.06729 5.13686 5.24515 5.28245 5.31048 5.37646 5.52977 5.59971 5.61779 5.80075 5.81990 5.85394 5.86425 6.00365 6.04316 6.09929 6.15437 6.23086 6.27754 6.29892 6.41605 6.50832 6.59742 6.62193 6.85636 7.12673 7.62642 7.63933 7.84785 8.08639 8.44478 9.02209 9.58902 11.06829 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.003862 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.504644 B = 7248.455589 C = 7703.082167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.055 4.055 3 C -0.141 4.141 4 C -0.109 4.109 5 C -0.080 4.080 6 C -0.165 4.165 7 C -0.085 4.085 8 C -0.210 4.210 9 C 0.140 3.860 10 O -0.273 6.273 11 C 0.044 3.956 12 C 0.000 4.000 13 N -0.455 5.455 14 C 0.156 3.844 15 C -0.504 4.504 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.275 1.275 22 H -0.277 1.277 23 C -0.005 4.005 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.004 0.996 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.303 7.486 15.268 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 C -0.198 4.198 4 C -0.110 4.110 5 C -0.098 4.098 6 C -0.183 4.183 7 C -0.104 4.104 8 C -0.228 4.228 9 C 0.093 3.907 10 O -0.185 6.185 11 C -0.013 4.013 12 C -0.129 4.129 13 N -0.178 5.178 14 C 0.030 3.970 15 C -0.543 4.543 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.203 1.203 23 C -0.135 4.135 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.021 0.979 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.311 8.005 14.507 21.253 hybrid contribution 1.188 -0.590 0.080 1.329 sum -12.123 7.415 14.586 20.364 Atomic orbital electron populations 1.21834 0.94715 1.01763 1.01426 1.19984 0.95384 0.95788 0.96133 1.21828 1.01484 0.95141 1.01344 1.19226 1.00417 0.95784 0.95587 1.20774 0.98784 0.99131 0.91130 1.20962 1.01376 0.97643 0.98324 1.20893 0.96924 0.95969 0.96577 1.21306 1.05787 1.03211 0.92514 1.18968 0.93736 0.93403 0.84545 1.86166 1.69682 1.38063 1.24613 1.23701 0.93955 0.84696 0.98909 1.23994 0.99221 0.96751 0.92939 1.69088 1.05349 1.36229 1.07122 1.20304 0.91353 0.92035 0.93312 1.21058 1.11639 0.93937 1.27653 0.91879 1.25000 0.97914 0.95056 0.96708 1.69944 1.35235 1.09461 1.39470 0.86527 0.80935 0.80169 0.79605 1.21330 1.20095 1.20251 1.24239 0.94022 1.02773 0.92469 0.92922 0.92487 0.92707 0.89119 0.92458 0.92480 0.92969 0.85838 0.86345 0.86171 0.85239 0.89759 0.89750 0.90505 0.95183 0.97871 0.92855 0.90672 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.00 37.16 0.33 -1.09 16 2 C -0.05 -0.67 3.06 -91.77 -0.28 -0.95 16 3 C -0.14 -1.53 9.01 37.16 0.33 -1.20 16 4 C -0.11 -1.42 4.79 -104.47 -0.50 -1.93 16 5 C -0.08 -0.88 8.71 -39.61 -0.35 -1.23 16 6 C -0.16 -1.72 10.04 -39.56 -0.40 -2.11 16 7 C -0.09 -0.94 10.04 -39.60 -0.40 -1.34 16 8 C -0.21 -2.69 9.03 -39.43 -0.36 -3.05 16 9 C 0.14 2.03 6.65 -39.21 -0.26 1.77 16 10 O -0.27 -4.54 8.96 -19.43 -0.17 -4.71 16 11 C 0.04 0.71 4.06 -26.20 -0.11 0.60 16 12 C 0.00 0.01 7.52 -7.55 -0.06 -0.05 16 13 N -0.45 -10.12 6.32 -246.13 -1.55 -11.68 16 14 C 0.16 4.10 4.57 -4.98 -0.02 4.08 16 15 C -0.50 -14.59 9.39 -34.44 -0.32 -14.92 16 16 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.90 22.05 29.54 -169.99 -5.02 17.02 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.01 -0.10 7.56 -7.55 -0.06 -0.16 16 24 H 0.05 0.46 7.37 -51.92 -0.38 0.08 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.32 6.99 -51.92 -0.36 0.96 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.49 7.41 -51.93 -0.38 0.10 16 31 H 0.12 1.10 7.10 -52.49 -0.37 0.73 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.54 5.89 -52.49 -0.31 1.23 16 35 H 0.08 1.11 5.90 -51.93 -0.31 0.81 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.08 1.28 7.91 -51.93 -0.41 0.87 16 38 H 0.03 0.84 8.08 -51.93 -0.42 0.42 16 39 H 0.00 0.09 7.30 -51.93 -0.38 -0.28 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -31.16 340.78 -10.05 -41.21 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.64 Total: -0.66 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -2.53 Total: -20.10 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.82 Total: -37.89 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.17 Total: -4.71 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.16 -10.05 -41.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228282069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.138 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds