Wall clock time and date at job start Mon Mar 30 2020 02:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.50700 * 109.47447 * 120.00084 * 2 1 3 5 5 C 1.38164 * 120.02912 * 300.32328 * 4 2 1 6 6 C 1.38246 * 120.05684 * 180.29458 * 5 4 2 7 7 C 1.38294 * 120.10730 * 359.67465 * 6 5 4 8 8 C 1.38118 * 120.05990 * 0.02562 * 7 6 5 9 9 C 1.38719 * 120.02688 * 119.99700 * 4 2 1 10 10 O 1.35903 * 120.05520 * 359.97438 * 9 4 2 11 11 C 1.42900 * 116.99821 * 185.53694 * 10 9 4 12 12 C 1.53507 * 114.17074 * 156.73773 * 11 10 9 13 13 N 1.47475 * 87.93272 * 87.80901 * 12 11 10 14 14 C 1.46904 * 110.99918 * 138.70609 * 13 12 11 15 15 C 1.50697 * 109.47257 * 170.00172 * 14 13 12 16 16 H 1.07995 * 120.00320 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99833 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99990 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99693 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47194 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47437 * 300.00002 * 19 17 15 22 22 H 1.48503 * 109.47446 * 60.00482 * 19 17 15 23 23 C 1.47479 * 87.83687 * 27.01431 * 13 12 11 24 24 H 1.09007 * 109.46983 * 299.99820 * 1 2 3 25 25 H 1.08996 * 109.47447 * 59.99477 * 1 2 3 26 26 H 1.08999 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46983 * 240.00180 * 2 1 3 28 28 H 1.09000 * 109.47500 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47260 * 300.00638 * 3 2 1 30 30 H 1.08998 * 109.46952 * 60.00311 * 3 2 1 31 31 H 1.07998 * 119.97166 * 359.97438 * 5 4 2 32 32 H 1.07995 * 119.94521 * 179.69854 * 6 5 4 33 33 H 1.08002 * 119.96480 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.03022 * 180.02562 * 8 7 6 35 35 H 1.09003 * 113.25625 * 23.77946 * 11 10 9 36 36 H 1.09002 * 113.47269 * 333.04316 * 12 11 10 37 37 H 1.08995 * 113.53327 * 202.58713 * 12 11 10 38 38 H 1.09002 * 109.47178 * 49.99771 * 14 13 12 39 39 H 1.09002 * 109.46946 * 289.99933 * 14 13 12 40 40 H 0.97006 * 119.99761 * 180.02562 * 18 17 15 41 41 H 1.08997 * 113.47939 * 87.75216 * 23 13 12 42 42 H 1.09004 * 113.47297 * 218.22094 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.6935 -0.2428 2.4856 6 6 2.1591 -0.8905 3.6147 7 6 2.9594 -2.0116 3.4911 8 6 3.2959 -2.4866 2.2386 9 6 2.8299 -1.8383 1.1037 10 8 3.1587 -2.3044 -0.1298 11 6 3.8797 -3.5368 -0.1867 12 6 3.7380 -4.2871 -1.5184 13 7 4.8858 -3.5077 -2.0183 14 6 5.7946 -4.3536 -2.8036 15 6 6.8134 -3.4870 -3.4979 16 1 6.7881 -2.4150 -3.3691 17 6 7.7778 -4.0627 -4.2976 18 7 7.8083 -5.3680 -4.4548 19 14 9.0402 -2.9884 -5.1588 20 1 9.9597 -3.8436 -5.9515 21 1 8.3460 -2.0365 -6.0627 22 1 9.8190 -2.2311 -4.1462 23 6 5.3450 -3.3933 -0.6215 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.0686 0.6324 2.5847 32 1 1.8971 -0.5206 4.5950 33 1 3.3215 -2.5160 4.3747 34 1 3.9205 -3.3624 2.1426 35 1 3.7351 -4.1612 0.6950 36 1 2.8061 -4.0716 -2.0411 37 1 3.9397 -5.3553 -1.4397 38 1 5.2227 -4.9088 -3.5471 39 1 6.3040 -5.0529 -2.1405 40 1 8.4871 -5.7731 -5.0171 41 1 5.9759 -4.2228 -0.3024 42 1 5.7751 -2.4202 -0.3842 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228282069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:10 Heat of formation + Delta-G solvation = -0.379086 kcal Electronic energy + Delta-G solvation = -21098.083053 eV Core-core repulsion = 18043.592846 eV Total energy + Delta-G solvation = -3054.490207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77997 -40.35714 -37.85556 -36.21528 -35.03138 -31.45291 -31.00327 -30.11925 -27.95380 -27.40354 -26.87719 -24.73077 -23.72604 -23.10538 -21.08531 -20.67211 -18.97762 -18.54427 -17.30732 -17.07024 -16.45449 -16.41902 -16.04876 -15.75057 -15.18026 -15.03395 -14.83907 -14.75510 -14.18662 -14.13414 -13.84966 -13.56712 -13.17217 -13.06828 -12.93095 -12.85360 -12.68678 -12.49349 -12.34498 -12.23812 -12.01390 -11.63903 -11.52153 -11.47517 -11.27867 -11.26972 -10.64130 -9.71621 -9.63056 -9.00948 -8.25743 -6.35888 0.43742 0.55063 1.37370 1.40689 1.49058 2.10271 2.37173 2.85004 3.06187 3.30458 3.31944 3.71809 3.78453 3.95458 4.10804 4.19399 4.32260 4.36291 4.40027 4.46425 4.54159 4.55540 4.57923 4.64490 4.70395 4.83016 4.87709 4.91743 4.94350 5.00331 5.01805 5.16028 5.24431 5.34376 5.42215 5.52293 5.54393 5.64574 5.69134 5.74582 5.96635 6.04825 6.41197 6.55783 6.77389 7.33547 8.85086 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.003862 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.504644 B = 7248.455589 C = 7703.082167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.122 4.122 5 C -0.081 4.081 6 C -0.158 4.158 7 C -0.089 4.089 8 C -0.219 4.219 9 C 0.103 3.897 10 O -0.296 6.296 11 C 0.071 3.929 12 C -0.001 4.001 13 N -0.484 5.484 14 C 0.172 3.828 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.277 1.277 21 H -0.270 1.270 22 H -0.269 1.269 23 C -0.008 4.008 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.004 0.996 39 H -0.012 1.012 40 H 0.267 0.733 41 H 0.080 0.920 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 8.790 17.348 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.075 4.075 3 C -0.194 4.194 4 C -0.122 4.122 5 C -0.099 4.099 6 C -0.176 4.176 7 C -0.107 4.107 8 C -0.237 4.237 9 C 0.058 3.942 10 O -0.209 6.209 11 C 0.014 3.986 12 C -0.130 4.130 13 N -0.207 5.207 14 C 0.045 3.955 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.194 4.194 18 N -0.572 5.572 19 Si 0.793 3.207 20 H -0.202 1.202 21 H -0.196 1.196 22 H -0.193 1.193 23 C -0.137 4.137 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.022 0.978 39 H 0.006 0.994 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.041 9.317 16.605 23.657 hybrid contribution 1.337 -0.956 -0.472 1.710 sum -12.704 8.361 16.133 22.171 Atomic orbital electron populations 1.21790 0.93011 1.01601 1.02749 1.19958 0.96790 0.96047 0.94682 1.21801 1.00230 0.94613 1.02756 1.19477 1.00462 0.95591 0.96714 1.21083 0.98712 0.99776 0.90353 1.21389 0.99886 0.96786 0.99521 1.21254 0.96600 0.96230 0.96642 1.21473 1.05934 1.03467 0.92852 1.19307 0.95753 0.94904 0.84186 1.86133 1.70052 1.38275 1.26474 1.23425 0.91268 0.84975 0.98967 1.24056 0.97497 0.97367 0.94035 1.68993 1.06263 1.36508 1.08941 1.19973 0.91136 0.91627 0.92779 1.21363 1.12972 0.93778 1.28690 0.92928 1.25887 0.99851 0.96449 0.97166 1.70050 1.36063 1.11072 1.39983 0.85450 0.78280 0.78440 0.78549 1.20208 1.19559 1.19350 1.24256 0.96407 1.02306 0.90747 0.90945 0.91778 0.93607 0.92579 0.94362 0.91768 0.90834 0.83398 0.83254 0.83579 0.84776 0.86368 0.89529 0.89231 0.97832 0.99436 0.92469 0.90191 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.00 71.98 0.65 -1.90 16 2 C -0.06 -1.36 3.06 -11.54 -0.04 -1.40 16 3 C -0.14 -2.86 9.01 71.98 0.65 -2.22 16 4 C -0.12 -3.05 4.79 -19.77 -0.09 -3.15 16 5 C -0.08 -1.56 8.71 22.25 0.19 -1.37 16 6 C -0.16 -2.71 10.04 22.28 0.22 -2.49 16 7 C -0.09 -1.70 10.04 22.25 0.22 -1.48 16 8 C -0.22 -5.29 9.03 22.36 0.20 -5.08 16 9 C 0.10 2.97 6.65 22.51 0.15 3.12 16 10 O -0.30 -10.04 8.96 -92.46 -0.83 -10.87 16 11 C 0.07 2.25 4.06 30.94 0.13 2.38 16 12 C 0.00 -0.02 7.52 83.57 0.63 0.61 16 13 N -0.48 -22.38 6.32 -933.01 -5.89 -28.28 16 14 C 0.17 9.42 4.57 85.56 0.39 9.81 16 15 C -0.53 -31.62 9.39 25.60 0.24 -31.38 16 16 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 17 C 0.00 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 19 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C -0.01 -0.30 7.56 83.57 0.63 0.33 16 24 H 0.07 1.08 7.37 -2.38 -0.02 1.06 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.72 6.99 -2.38 -0.02 1.71 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.20 7.41 -2.39 -0.02 1.18 16 31 H 0.15 2.04 7.10 -2.91 -0.02 2.02 16 32 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.13 2.97 5.89 -2.91 -0.02 2.95 16 35 H 0.12 2.97 5.90 -2.39 -0.01 2.95 16 36 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 37 H 0.09 3.01 7.91 -2.39 -0.02 3.00 16 38 H 0.00 0.21 8.08 -2.39 -0.02 0.19 16 39 H -0.01 -0.68 7.30 -2.39 -0.02 -0.70 16 40 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 41 H 0.08 2.99 7.42 -2.39 -0.02 2.97 16 42 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -69.15 340.78 1.22 -67.94 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.99 Total: 13.44 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 4.64 Total: -33.47 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -5.61 Total: -84.63 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.83 Total: -10.87 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -69.15 1.22 -67.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228282069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.560 kcal (2) G-P(sol) polarization free energy of solvation -69.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds