Wall clock time and date at job start Mon Mar 30 2020 02:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.50699 * 109.47186 * 180.02562 * 3 2 1 5 5 C 1.38285 * 119.96910 * 270.01918 * 4 3 2 6 6 C 1.38243 * 120.11292 * 180.02562 * 5 4 3 7 7 C 1.38172 * 120.05509 * 359.68446 * 6 5 4 8 8 C 1.38714 * 119.93925 * 0.56969 * 7 6 5 9 9 O 1.35894 * 120.05163 * 179.72417 * 8 7 6 10 10 C 1.42900 * 117.00387 * 5.45242 * 9 8 7 11 11 C 1.53514 * 114.17280 * 156.76238 * 10 9 8 12 12 N 1.47482 * 87.92687 * 87.62735 * 11 10 9 13 13 C 1.46904 * 110.99955 * 138.70589 * 12 11 10 14 14 C 1.50702 * 109.47236 * 169.99683 * 13 12 11 15 15 H 1.07994 * 119.99901 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99852 * 180.27491 * 14 13 12 17 17 N 1.31514 * 120.00086 * 359.72467 * 16 14 13 18 18 Si 1.86797 * 119.99943 * 179.72864 * 16 14 13 19 19 H 1.48498 * 109.47421 * 59.99674 * 18 16 14 20 20 H 1.48503 * 109.47378 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46904 * 299.99865 * 18 16 14 22 22 C 1.47476 * 87.83655 * 27.01142 * 12 11 10 23 23 C 1.38127 * 119.97571 * 89.99663 * 4 3 2 24 24 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47662 * 300.00214 * 1 2 3 26 26 H 1.09002 * 109.47429 * 60.00347 * 1 2 3 27 27 H 1.08996 * 109.47293 * 240.00075 * 2 1 3 28 28 H 1.08996 * 109.47079 * 119.99398 * 2 1 3 29 29 H 1.08996 * 109.47589 * 59.99371 * 3 2 1 30 30 H 1.09009 * 109.47032 * 299.99738 * 3 2 1 31 31 H 1.08002 * 119.94647 * 0.02562 * 5 4 3 32 32 H 1.08008 * 119.97256 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.02883 * 180.29616 * 7 6 5 34 34 H 1.09000 * 113.25377 * 23.82050 * 10 9 8 35 35 H 1.09001 * 113.47486 * 332.86460 * 11 10 9 36 36 H 1.08999 * 113.47864 * 202.39290 * 11 10 9 37 37 H 1.09001 * 109.46912 * 49.99811 * 13 12 11 38 38 H 1.08997 * 109.46899 * 289.99919 * 13 12 11 39 39 H 0.97006 * 119.99931 * 179.97438 * 17 16 14 40 40 H 1.09003 * 113.47545 * 87.75540 * 22 12 11 41 41 H 1.09004 * 113.47402 * 218.22206 * 22 12 11 42 42 H 1.07993 * 120.02256 * 0.02644 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2382 1.4421 1.1970 6 6 5.6207 1.4426 1.1999 7 6 6.3152 1.4372 0.0054 8 6 5.6240 1.4431 -1.1973 9 8 6.3048 1.4434 -2.3734 10 6 7.7263 1.3166 -2.3003 11 6 8.3752 0.7695 -3.5795 12 7 8.4465 2.1575 -4.0729 13 6 9.7278 2.4122 -4.7448 14 6 9.6715 3.7455 -5.4451 15 1 8.7736 4.3435 -5.3963 16 6 10.7642 4.1988 -6.1532 17 7 11.8575 3.4703 -6.2130 18 14 10.6918 5.8480 -7.0275 19 1 10.4356 6.9232 -6.0359 20 1 11.9854 6.1033 -7.7107 21 1 9.5970 5.8287 -8.0307 22 6 8.4913 2.5963 -2.6656 23 6 4.2366 1.4427 -1.1974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8901 31 1 3.6972 1.4412 2.1318 32 1 6.1583 1.4426 2.1367 33 1 7.3951 1.4328 0.0082 34 1 8.0688 0.8342 -1.3848 35 1 7.7113 0.1339 -4.1655 36 1 9.3528 0.3176 -3.4115 37 1 9.9176 1.6258 -5.4753 38 1 10.5294 2.4233 -4.0063 39 1 12.6261 3.7891 -6.7115 40 1 9.4999 2.6319 -2.2537 41 1 7.9258 3.5090 -2.4772 42 1 3.6962 1.4432 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228448129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:15 Heat of formation + Delta-G solvation = 14.603783 kcal Electronic energy + Delta-G solvation = -20356.142096 eV Core-core repulsion = 17302.301595 eV Total energy + Delta-G solvation = -3053.840501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46994 -39.08068 -36.96040 -34.91408 -32.87086 -31.21273 -30.18034 -28.99580 -26.70866 -25.52793 -25.23575 -22.73700 -22.47723 -21.73910 -20.96762 -19.11707 -17.81461 -16.37335 -16.06955 -15.99636 -15.43437 -15.12586 -14.80730 -14.44113 -14.28221 -13.92216 -13.66184 -13.50821 -13.29982 -12.97381 -12.38324 -12.21315 -12.13354 -11.95377 -11.74217 -11.49684 -11.35397 -11.20624 -10.92096 -10.89988 -10.74092 -10.48032 -10.33297 -10.03847 -9.67353 -9.28377 -8.83176 -8.43752 -8.08155 -7.86606 -6.04161 -4.05185 1.28979 1.46853 3.24824 3.34448 3.37515 3.41774 3.72629 4.42425 4.55456 4.66202 4.72678 4.80767 4.85379 4.88631 4.96355 5.13861 5.22035 5.24739 5.31034 5.35293 5.43792 5.54129 5.59079 5.61806 5.76075 5.82649 5.86286 5.91239 6.01136 6.05577 6.08489 6.15440 6.29844 6.37405 6.43312 6.56694 6.59959 6.82379 7.12667 7.62693 7.64012 7.84865 8.08727 8.44576 9.02296 9.58963 11.06917 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029803 B = 0.002970 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.270383 B = 9426.074761 C = 9721.666893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.080 4.080 4 C -0.046 4.046 5 C -0.165 4.165 6 C -0.077 4.077 7 C -0.217 4.217 8 C 0.142 3.858 9 O -0.276 6.276 10 C 0.044 3.956 11 C 0.000 4.000 12 N -0.456 5.456 13 C 0.156 3.844 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.006 4.006 23 C -0.154 4.154 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.004 0.996 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.558 -7.375 16.237 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.118 4.118 4 C -0.046 4.046 5 C -0.183 4.183 6 C -0.096 4.096 7 C -0.235 4.235 8 C 0.096 3.904 9 O -0.189 6.189 10 C -0.013 4.013 11 C -0.129 4.129 12 N -0.179 5.179 13 C 0.030 3.970 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.135 4.135 23 C -0.173 4.173 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.916 -7.081 15.442 23.974 hybrid contribution 1.167 0.630 0.069 1.328 sum -15.749 -6.451 15.510 23.027 Atomic orbital electron populations 1.21791 0.95726 1.01668 1.01842 1.21508 0.95577 0.96044 1.02540 1.20643 0.90606 0.97487 1.03017 1.19624 0.95427 0.97231 0.92297 1.20850 0.94084 1.06036 0.97325 1.20894 0.94115 0.97265 0.97285 1.21319 1.00608 1.09318 0.92283 1.19128 0.91828 0.94186 0.85233 1.86186 1.19372 1.86424 1.26878 1.23714 0.78750 0.99562 0.99244 1.24005 0.99155 0.96035 0.93741 1.69091 1.35668 1.03351 1.09781 1.20304 0.84275 0.98079 0.94333 1.21061 0.99405 1.02986 1.30847 0.91876 1.25005 0.95327 0.97777 0.96620 1.69945 1.03744 1.37975 1.42431 0.86519 0.77117 0.83746 0.79808 1.20244 1.21331 1.20099 1.24243 0.99047 0.97685 0.92550 1.20288 0.90955 1.07435 0.98587 0.92716 0.92773 0.92617 0.91657 0.91871 0.90924 0.90804 0.86357 0.86055 0.85243 0.89637 0.89712 0.90442 0.95169 0.97850 0.92855 0.90612 0.89979 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.08 -0.68 5.34 -27.88 -0.15 -0.83 16 4 C -0.05 -0.50 5.13 -104.65 -0.54 -1.04 16 5 C -0.16 -1.73 9.70 -39.56 -0.38 -2.11 16 6 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 7 C -0.22 -2.78 9.03 -39.43 -0.36 -3.14 16 8 C 0.14 2.09 6.68 -39.22 -0.26 1.83 16 9 O -0.28 -4.72 10.18 -19.41 -0.20 -4.92 16 10 C 0.04 0.71 4.07 -26.20 -0.11 0.61 16 11 C 0.00 0.00 7.52 -7.54 -0.06 -0.06 16 12 N -0.46 -10.27 6.32 -246.12 -1.55 -11.83 16 13 C 0.16 4.12 4.57 -4.97 -0.02 4.10 16 14 C -0.50 -14.67 9.39 -34.44 -0.32 -14.99 16 15 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 18 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.01 -0.11 7.55 -7.55 -0.06 -0.17 16 23 C -0.15 -2.03 9.64 -39.43 -0.38 -2.41 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.61 8.08 -51.92 -0.42 0.19 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.13 1.53 5.88 -52.49 -0.31 1.23 16 34 H 0.09 1.14 5.89 -51.93 -0.31 0.83 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 37 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.39 7.42 -51.93 -0.39 1.01 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -31.51 346.54 -10.55 -42.06 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.82 Total: -1.67 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.92 Total: -19.69 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.82 Total: -38.10 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.20 Total: -4.92 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.51 -10.55 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228448129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.667 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds