Wall clock time and date at job start Mon Mar 30 2020 02:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.50699 * 109.47186 * 180.02562 * 3 2 1 5 5 C 1.38285 * 119.96910 * 270.01918 * 4 3 2 6 6 C 1.38243 * 120.11292 * 180.02562 * 5 4 3 7 7 C 1.38172 * 120.05509 * 359.68446 * 6 5 4 8 8 C 1.38714 * 119.93925 * 0.56969 * 7 6 5 9 9 O 1.35894 * 120.05163 * 179.72417 * 8 7 6 10 10 C 1.42900 * 117.00387 * 5.45242 * 9 8 7 11 11 C 1.53514 * 114.17280 * 156.76238 * 10 9 8 12 12 N 1.47482 * 87.92687 * 87.62735 * 11 10 9 13 13 C 1.46904 * 110.99955 * 138.70589 * 12 11 10 14 14 C 1.50702 * 109.47236 * 169.99683 * 13 12 11 15 15 H 1.07994 * 119.99901 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99852 * 180.27491 * 14 13 12 17 17 N 1.31514 * 120.00086 * 359.72467 * 16 14 13 18 18 Si 1.86797 * 119.99943 * 179.72864 * 16 14 13 19 19 H 1.48498 * 109.47421 * 59.99674 * 18 16 14 20 20 H 1.48503 * 109.47378 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46904 * 299.99865 * 18 16 14 22 22 C 1.47476 * 87.83655 * 27.01142 * 12 11 10 23 23 C 1.38127 * 119.97571 * 89.99663 * 4 3 2 24 24 H 1.08995 * 109.47196 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47662 * 300.00214 * 1 2 3 26 26 H 1.09002 * 109.47429 * 60.00347 * 1 2 3 27 27 H 1.08996 * 109.47293 * 240.00075 * 2 1 3 28 28 H 1.08996 * 109.47079 * 119.99398 * 2 1 3 29 29 H 1.08996 * 109.47589 * 59.99371 * 3 2 1 30 30 H 1.09009 * 109.47032 * 299.99738 * 3 2 1 31 31 H 1.08002 * 119.94647 * 0.02562 * 5 4 3 32 32 H 1.08008 * 119.97256 * 179.97438 * 6 5 4 33 33 H 1.07996 * 120.02883 * 180.29616 * 7 6 5 34 34 H 1.09000 * 113.25377 * 23.82050 * 10 9 8 35 35 H 1.09001 * 113.47486 * 332.86460 * 11 10 9 36 36 H 1.08999 * 113.47864 * 202.39290 * 11 10 9 37 37 H 1.09001 * 109.46912 * 49.99811 * 13 12 11 38 38 H 1.08997 * 109.46899 * 289.99919 * 13 12 11 39 39 H 0.97006 * 119.99931 * 179.97438 * 17 16 14 40 40 H 1.09003 * 113.47545 * 87.75540 * 22 12 11 41 41 H 1.09004 * 113.47402 * 218.22206 * 22 12 11 42 42 H 1.07993 * 120.02256 * 0.02644 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.2382 1.4421 1.1970 6 6 5.6207 1.4426 1.1999 7 6 6.3152 1.4372 0.0054 8 6 5.6240 1.4431 -1.1973 9 8 6.3048 1.4434 -2.3734 10 6 7.7263 1.3166 -2.3003 11 6 8.3752 0.7695 -3.5795 12 7 8.4465 2.1575 -4.0729 13 6 9.7278 2.4122 -4.7448 14 6 9.6715 3.7455 -5.4451 15 1 8.7736 4.3435 -5.3963 16 6 10.7642 4.1988 -6.1532 17 7 11.8575 3.4703 -6.2130 18 14 10.6918 5.8480 -7.0275 19 1 10.4356 6.9232 -6.0359 20 1 11.9854 6.1033 -7.7107 21 1 9.5970 5.8287 -8.0307 22 6 8.4913 2.5963 -2.6656 23 6 4.2366 1.4427 -1.1974 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8901 31 1 3.6972 1.4412 2.1318 32 1 6.1583 1.4426 2.1367 33 1 7.3951 1.4328 0.0082 34 1 8.0688 0.8342 -1.3848 35 1 7.7113 0.1339 -4.1655 36 1 9.3528 0.3176 -3.4115 37 1 9.9176 1.6258 -5.4753 38 1 10.5294 2.4233 -4.0063 39 1 12.6261 3.7891 -6.7115 40 1 9.4999 2.6319 -2.2537 41 1 7.9258 3.5090 -2.4772 42 1 3.6962 1.4432 -2.1324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228448129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:14 Heat of formation + Delta-G solvation = -4.715822 kcal Electronic energy + Delta-G solvation = -20356.979857 eV Core-core repulsion = 17302.301595 eV Total energy + Delta-G solvation = -3054.678262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.73104 -40.26609 -38.15147 -35.66280 -35.02409 -32.05757 -31.49878 -30.48644 -27.66571 -27.06269 -26.87975 -24.06476 -23.47760 -22.97275 -22.02204 -20.34590 -18.97104 -18.51639 -17.26088 -17.02428 -16.86095 -16.42550 -16.04992 -15.74764 -15.44780 -15.08901 -14.99579 -14.51577 -14.29339 -14.25752 -13.89067 -13.59857 -13.29868 -13.07177 -12.88707 -12.79326 -12.55099 -12.40010 -12.29161 -12.22037 -11.99797 -11.69451 -11.51692 -11.50410 -11.35289 -11.26087 -10.64258 -9.73129 -9.63018 -9.09447 -8.25817 -6.36004 0.38805 0.52325 1.37316 1.40703 1.49075 2.07246 2.37087 2.80277 3.05934 3.29909 3.31087 3.72020 3.86785 3.93428 4.06436 4.21735 4.26590 4.29975 4.40284 4.42572 4.47450 4.56276 4.58034 4.63196 4.65712 4.77855 4.89150 4.91068 4.93948 5.01751 5.04055 5.12190 5.28225 5.30725 5.42185 5.49105 5.53996 5.54353 5.70858 5.74486 5.92523 6.04617 6.40950 6.53767 6.77246 7.33365 8.84903 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.029803 B = 0.002970 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.270383 B = 9426.074761 C = 9721.666893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.078 4.078 4 C -0.046 4.046 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.225 4.225 8 C 0.111 3.889 9 O -0.302 6.302 10 C 0.070 3.930 11 C -0.001 4.001 12 N -0.487 5.487 13 C 0.172 3.828 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.271 1.271 22 C -0.008 4.008 23 C -0.171 4.171 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.004 0.996 38 H -0.011 1.011 39 H 0.267 0.733 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.742 -7.104 18.276 26.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.115 4.115 4 C -0.046 4.046 5 C -0.178 4.178 6 C -0.095 4.095 7 C -0.244 4.244 8 C 0.066 3.934 9 O -0.216 6.216 10 C 0.013 3.987 11 C -0.130 4.130 12 N -0.210 5.210 13 C 0.045 3.955 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.793 3.207 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.138 4.138 23 C -0.190 4.190 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.022 0.978 38 H 0.007 0.993 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.122 -6.821 17.498 26.098 hybrid contribution 1.440 0.503 -0.478 1.598 sum -16.682 -6.318 17.020 24.655 Atomic orbital electron populations 1.21776 0.94641 1.02135 1.02279 1.21477 0.96490 0.95358 1.02089 1.20695 0.88884 0.98158 1.03809 1.19935 0.96777 0.96113 0.91779 1.21255 0.94209 1.04212 0.98157 1.21272 0.94582 0.95981 0.97699 1.21486 1.01129 1.09469 0.92288 1.19412 0.92353 0.96500 0.85134 1.86136 1.19491 1.87197 1.28766 1.23460 0.78641 0.96999 0.99552 1.24079 1.00274 0.93923 0.94760 1.68996 1.33196 1.06781 1.12015 1.19971 0.85855 0.96189 0.93467 1.21367 0.99338 1.04233 1.31904 0.92934 1.25899 0.94769 1.01674 0.97122 1.70050 1.04358 1.39748 1.42960 0.85441 0.77537 0.79001 0.78677 1.19322 1.20208 1.19595 1.24272 0.99887 0.98914 0.90718 1.20458 0.90757 1.08350 0.99439 0.92278 0.91789 0.92736 0.92967 0.91491 0.89146 0.91007 0.83470 0.83193 0.84503 0.86035 0.89473 0.89042 0.97822 0.99344 0.92466 0.89991 0.91018 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 3 C -0.08 -1.18 5.34 29.85 0.16 -1.02 16 4 C -0.05 -0.94 5.13 -19.88 -0.10 -1.04 16 5 C -0.16 -2.87 9.70 22.28 0.22 -2.66 16 6 C -0.08 -1.47 10.04 22.26 0.22 -1.25 16 7 C -0.23 -5.41 9.03 22.37 0.20 -5.21 16 8 C 0.11 3.22 6.68 22.51 0.15 3.37 16 9 O -0.30 -10.42 10.18 -92.35 -0.94 -11.36 16 10 C 0.07 2.24 4.07 30.94 0.13 2.36 16 11 C 0.00 -0.05 7.52 83.57 0.63 0.58 16 12 N -0.49 -22.57 6.32 -932.98 -5.89 -28.46 16 13 C 0.17 9.43 4.57 85.56 0.39 9.82 16 14 C -0.53 -31.67 9.39 25.60 0.24 -31.43 16 15 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.01 -0.33 7.55 83.57 0.63 0.30 16 23 C -0.17 -4.49 9.64 22.37 0.22 -4.28 16 24 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.07 1.11 8.08 -2.38 -0.02 1.09 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.14 2.96 5.88 -2.91 -0.02 2.94 16 34 H 0.12 3.00 5.89 -2.39 -0.01 2.98 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.09 3.05 7.91 -2.39 -0.02 3.03 16 37 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 38 H -0.01 -0.63 7.30 -2.39 -0.02 -0.65 16 39 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 40 H 0.08 3.04 7.42 -2.39 -0.02 3.02 16 41 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 42 H 0.12 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -69.12 346.54 0.90 -68.22 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.98 Total: 12.37 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 4.44 Total: -32.11 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -5.61 Total: -84.76 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.94 Total: -11.36 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -69.12 0.90 -68.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228448129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.507 kcal (2) G-P(sol) polarization free energy of solvation -69.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds