Wall clock time and date at job start Mon Mar 30 2020 01:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38165 * 119.96982 * 2 1 4 4 C 1.38716 * 119.94243 * 179.97438 * 3 2 1 5 5 O 1.35900 * 120.05583 * 179.97438 * 4 3 2 6 6 C 1.38750 * 119.88935 * 0.02562 * 4 3 2 7 7 C 1.38122 * 119.94248 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.97078 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47016 * 90.00254 * 8 7 6 10 10 C 1.46852 * 110.99758 * 294.20710 * 9 8 7 11 11 C 1.53044 * 109.52198 * 174.16640 * 10 9 8 12 12 C 1.53112 * 109.28010 * 59.17582 * 11 10 9 13 13 C 1.53116 * 109.16591 * 302.34710 * 12 11 10 14 14 H 1.09004 * 109.53383 * 297.69623 * 13 12 11 15 15 C 1.50694 * 109.50594 * 177.59490 * 13 12 11 16 16 H 1.08000 * 120.00563 * 240.19687 * 15 13 12 17 17 C 1.37885 * 119.99902 * 60.19850 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46849 * 111.00167 * 170.00047 * 9 8 7 24 24 C 1.38248 * 119.97314 * 180.25183 * 2 1 3 25 25 H 1.08993 * 109.46933 * 89.99794 * 1 2 3 26 26 H 1.09000 * 109.46923 * 209.99953 * 1 2 3 27 27 H 1.09002 * 109.46981 * 329.99683 * 1 2 3 28 28 H 1.07994 * 120.03402 * 0.02562 * 3 2 1 29 29 H 0.96703 * 114.00172 * 270.02256 * 5 4 3 30 30 H 1.08000 * 120.03046 * 180.02562 * 6 4 3 31 31 H 1.08997 * 109.47310 * 329.99745 * 8 7 6 32 32 H 1.09004 * 109.47247 * 209.99482 * 8 7 6 33 33 H 1.08998 * 109.46190 * 294.17319 * 10 9 8 34 34 H 1.08994 * 109.46462 * 54.14796 * 10 9 8 35 35 H 1.08999 * 109.50002 * 179.12318 * 11 10 9 36 36 H 1.09002 * 109.50074 * 299.23514 * 11 10 9 37 37 H 1.09003 * 109.52299 * 182.44001 * 12 11 10 38 38 H 1.09001 * 109.52333 * 62.25375 * 12 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46434 * 65.81575 * 23 9 8 41 41 H 1.08994 * 109.46147 * 305.85189 * 23 9 8 42 42 H 1.08001 * 119.94230 * 0.04761 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3722 0.0000 6 6 4.2752 -0.0070 0.0005 7 6 3.5805 -1.2008 -0.0005 8 6 4.3303 -2.5081 -0.0011 9 7 4.5733 -2.9339 1.3837 10 6 5.4813 -2.0046 2.0682 11 6 5.5963 -2.3955 3.5434 12 6 6.1281 -3.8276 3.6469 13 6 5.1905 -4.7683 2.8852 14 1 4.2020 -4.7480 3.3442 15 6 5.7383 -6.1714 2.9323 16 1 5.9881 -6.6847 2.0155 17 6 5.9206 -6.7999 4.1459 18 7 5.6169 -6.1748 5.2624 19 14 6.5990 -8.5394 4.2041 20 1 5.4767 -9.5105 4.1511 21 1 7.4989 -8.7590 3.0435 22 1 7.3607 -8.7316 5.4644 23 6 5.0873 -4.3087 1.4291 24 6 2.1977 -1.1976 -0.0053 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6573 2.1322 0.0004 29 1 4.4628 2.7121 -0.8836 30 1 5.3552 -0.0102 0.0014 31 1 5.2832 -2.3803 -0.5145 32 1 3.7391 -3.2658 -0.5156 33 1 6.4659 -2.0499 1.6028 34 1 5.0893 -0.9906 1.9907 35 1 6.2824 -1.7151 4.0477 36 1 4.6143 -2.3372 4.0129 37 1 6.1707 -4.1255 4.6946 38 1 7.1265 -3.8777 3.2122 39 1 5.7448 -6.6171 6.1161 40 1 6.0737 -4.3432 0.9666 41 1 4.4091 -4.9680 0.8874 42 1 1.6563 -2.1321 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232882782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:09 Heat of formation + Delta-G solvation = -32.040459 kcal Electronic energy + Delta-G solvation = -21273.753055 eV Core-core repulsion = 18217.889908 eV Total energy + Delta-G solvation = -3055.863147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99779 -38.17328 -36.88893 -34.24880 -32.60788 -31.46677 -30.01472 -29.67044 -27.03019 -25.90220 -24.89564 -22.43506 -21.93886 -21.29649 -20.30796 -18.56125 -17.82005 -16.40737 -16.23650 -15.99608 -15.31102 -14.85700 -14.60806 -14.08823 -13.81618 -13.64007 -13.30323 -13.05336 -12.75472 -12.63827 -12.43171 -12.23248 -11.88056 -11.67339 -11.63800 -11.37458 -11.06516 -10.93821 -10.70315 -10.64244 -10.43739 -10.07164 -9.80935 -9.44218 -9.05817 -8.68504 -8.64521 -8.49974 -8.27692 -7.64446 -5.95257 -4.01594 1.27827 1.31047 3.32070 3.38794 3.41510 3.57195 4.10062 4.43745 4.68879 4.75689 4.83515 5.11553 5.27970 5.33509 5.34770 5.45225 5.49585 5.52868 5.69545 5.77010 5.86238 5.87265 5.98703 6.09936 6.13574 6.29746 6.39060 6.41669 6.49399 6.54285 6.68189 6.76952 6.78850 6.83099 6.99174 7.25502 7.42356 7.58678 7.68736 7.76993 7.83065 8.10903 8.20266 8.50203 9.02524 9.62573 11.10715 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.003841 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.841086 B = 7287.165695 C = 7624.129775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.152 4.152 4 C 0.103 3.897 5 O -0.500 6.500 6 C -0.144 4.144 7 C -0.045 4.045 8 C 0.089 3.911 9 N -0.531 5.531 10 C 0.059 3.941 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.515 4.515 16 H 0.053 0.947 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.287 1.287 23 C 0.068 3.932 24 C -0.107 4.107 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.386 0.614 30 H 0.124 0.876 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.019 0.981 41 H 0.059 0.941 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 13.908 -12.122 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.171 4.171 4 C 0.059 3.941 5 O -0.310 6.310 6 C -0.163 4.163 7 C -0.046 4.046 8 C -0.039 4.039 9 N -0.256 5.256 10 C -0.069 4.069 11 C -0.154 4.154 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.554 4.554 16 H 0.071 0.929 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.059 4.059 24 C -0.125 4.125 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.241 0.759 30 H 0.142 0.858 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.499 13.810 -11.060 18.849 hybrid contribution 1.321 -0.815 -0.792 1.742 sum -5.179 12.995 -11.852 18.335 Atomic orbital electron populations 1.20785 0.90997 1.03010 1.02182 1.19763 0.96072 0.92576 0.98973 1.21192 0.93321 0.98160 1.04408 1.18377 0.89834 0.84950 1.00988 1.84844 1.76445 1.36452 1.33224 1.21310 1.00273 0.91556 1.03191 1.19729 0.93722 0.94377 0.96728 1.21061 0.97870 0.93296 0.91640 1.62034 1.47772 1.03635 1.12143 1.22125 0.93174 0.95585 0.95972 1.21665 1.00834 0.99138 0.93806 1.21651 0.97493 0.91252 1.04434 1.18660 0.96290 0.93204 0.88197 0.94749 1.21147 1.42983 0.98876 0.92376 0.92860 1.24936 0.95489 0.97653 0.95743 1.69899 1.48470 1.36893 0.97397 0.86631 0.79056 0.85137 0.77364 1.20713 1.20034 1.21287 1.22340 0.96157 0.85908 1.01481 1.20966 0.93499 0.97661 1.00401 0.91246 0.91141 0.91643 0.85899 0.75907 0.85830 0.94593 0.90058 0.96076 0.91918 0.93600 0.92152 0.89146 0.95208 0.93069 0.96264 0.92207 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 2 C -0.07 -0.87 5.88 -104.64 -0.62 -1.48 16 3 C -0.15 -1.79 9.64 -39.43 -0.38 -2.17 16 4 C 0.10 1.29 6.71 -39.22 -0.26 1.03 16 5 O -0.50 -5.55 13.50 -19.42 -0.26 -5.82 16 6 C -0.14 -1.94 7.81 -39.43 -0.31 -2.25 16 7 C -0.04 -0.63 4.89 -104.65 -0.51 -1.14 16 8 C 0.09 1.36 5.12 -4.98 -0.03 1.33 16 9 N -0.53 -10.00 4.65 -236.11 -1.10 -11.09 16 10 C 0.06 1.10 5.16 -3.83 -0.02 1.08 16 11 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 12 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 13 C 0.06 1.40 2.26 -91.70 -0.21 1.19 16 14 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 15 C -0.52 -14.18 8.56 -34.44 -0.29 -14.47 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 18 N -0.89 -25.53 11.36 55.43 0.63 -24.90 16 19 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 C 0.07 1.45 4.68 -3.83 -0.02 1.43 16 24 C -0.11 -1.40 9.35 -39.56 -0.37 -1.77 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 29 H 0.39 2.27 9.06 45.56 0.41 2.68 16 30 H 0.12 1.61 7.95 -52.49 -0.42 1.20 16 31 H 0.04 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 1.16 7.93 -51.93 -0.41 0.75 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 1.10 5.75 -51.93 -0.30 0.80 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.24 8.01 -51.93 -0.42 0.82 16 42 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 335.13 15.07 5.05 5.05 Total: -1.00 -30.34 335.13 -9.80 -40.14 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.06 Total: 1.91 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -3.04 Total: -21.58 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.47 Total: -36.00 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.26 Total: -5.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.34 -9.80 -40.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232882782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.099 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds