Wall clock time and date at job start Mon Mar 30 2020 01:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38165 * 119.96982 * 2 1 4 4 C 1.38716 * 119.94243 * 179.97438 * 3 2 1 5 5 O 1.35900 * 120.05583 * 179.97438 * 4 3 2 6 6 C 1.38750 * 119.88935 * 0.02562 * 4 3 2 7 7 C 1.38122 * 119.94248 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.97078 * 179.97438 * 7 6 4 9 9 N 1.46898 * 109.47016 * 90.00254 * 8 7 6 10 10 C 1.46852 * 110.99758 * 294.20710 * 9 8 7 11 11 C 1.53044 * 109.52198 * 174.16640 * 10 9 8 12 12 C 1.53112 * 109.28010 * 59.17582 * 11 10 9 13 13 C 1.53116 * 109.16591 * 302.34710 * 12 11 10 14 14 H 1.09004 * 109.53383 * 297.69623 * 13 12 11 15 15 C 1.50694 * 109.50594 * 177.59490 * 13 12 11 16 16 H 1.08000 * 120.00563 * 240.19687 * 15 13 12 17 17 C 1.37885 * 119.99902 * 60.19850 * 15 13 12 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.46849 * 111.00167 * 170.00047 * 9 8 7 24 24 C 1.38248 * 119.97314 * 180.25183 * 2 1 3 25 25 H 1.08993 * 109.46933 * 89.99794 * 1 2 3 26 26 H 1.09000 * 109.46923 * 209.99953 * 1 2 3 27 27 H 1.09002 * 109.46981 * 329.99683 * 1 2 3 28 28 H 1.07994 * 120.03402 * 0.02562 * 3 2 1 29 29 H 0.96703 * 114.00172 * 270.02256 * 5 4 3 30 30 H 1.08000 * 120.03046 * 180.02562 * 6 4 3 31 31 H 1.08997 * 109.47310 * 329.99745 * 8 7 6 32 32 H 1.09004 * 109.47247 * 209.99482 * 8 7 6 33 33 H 1.08998 * 109.46190 * 294.17319 * 10 9 8 34 34 H 1.08994 * 109.46462 * 54.14796 * 10 9 8 35 35 H 1.08999 * 109.50002 * 179.12318 * 11 10 9 36 36 H 1.09002 * 109.50074 * 299.23514 * 11 10 9 37 37 H 1.09003 * 109.52299 * 182.44001 * 12 11 10 38 38 H 1.09001 * 109.52333 * 62.25375 * 12 11 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.46434 * 65.81575 * 23 9 8 41 41 H 1.08994 * 109.46147 * 305.85189 * 23 9 8 42 42 H 1.08001 * 119.94230 * 0.04761 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2656 2.3722 0.0000 6 6 4.2752 -0.0070 0.0005 7 6 3.5805 -1.2008 -0.0005 8 6 4.3303 -2.5081 -0.0011 9 7 4.5733 -2.9339 1.3837 10 6 5.4813 -2.0046 2.0682 11 6 5.5963 -2.3955 3.5434 12 6 6.1281 -3.8276 3.6469 13 6 5.1905 -4.7683 2.8852 14 1 4.2020 -4.7480 3.3442 15 6 5.7383 -6.1714 2.9323 16 1 5.9881 -6.6847 2.0155 17 6 5.9206 -6.7999 4.1459 18 7 5.6169 -6.1748 5.2624 19 14 6.5990 -8.5394 4.2041 20 1 5.4767 -9.5105 4.1511 21 1 7.4989 -8.7590 3.0435 22 1 7.3607 -8.7316 5.4644 23 6 5.0873 -4.3087 1.4291 24 6 2.1977 -1.1976 -0.0053 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6573 2.1322 0.0004 29 1 4.4628 2.7121 -0.8836 30 1 5.3552 -0.0102 0.0014 31 1 5.2832 -2.3803 -0.5145 32 1 3.7391 -3.2658 -0.5156 33 1 6.4659 -2.0499 1.6028 34 1 5.0893 -0.9906 1.9907 35 1 6.2824 -1.7151 4.0477 36 1 4.6143 -2.3372 4.0129 37 1 6.1707 -4.1255 4.6946 38 1 7.1265 -3.8777 3.2122 39 1 5.7448 -6.6171 6.1161 40 1 6.0737 -4.3432 0.9666 41 1 4.4091 -4.9680 0.8874 42 1 1.6563 -2.1321 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232882782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:08 Heat of formation + Delta-G solvation = -51.011384 kcal Electronic energy + Delta-G solvation = -21274.575696 eV Core-core repulsion = 18217.889908 eV Total energy + Delta-G solvation = -3056.685788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00180 -39.65623 -37.85049 -35.84081 -34.18010 -32.82826 -31.64968 -30.95689 -27.88276 -27.19312 -26.88359 -23.84072 -23.40573 -22.65875 -21.41446 -20.36896 -18.73392 -18.39241 -17.20264 -16.97244 -16.86655 -16.39330 -15.97642 -15.57851 -15.17262 -14.96049 -14.48762 -14.32039 -14.24676 -14.02279 -13.71768 -13.43498 -13.33947 -12.99767 -12.84607 -12.67738 -12.58692 -12.45246 -12.34957 -12.15393 -11.83052 -11.73457 -11.48713 -11.33393 -10.86735 -10.67033 -10.38039 -9.64755 -9.44226 -9.13057 -8.07291 -6.21755 0.33353 0.35776 1.42261 1.42545 1.52854 2.43023 2.61047 3.18026 3.19860 3.36397 3.76382 3.89456 4.15859 4.19314 4.22248 4.35922 4.38754 4.43607 4.52660 4.59590 4.62087 4.67066 4.74525 4.86990 4.87349 4.96532 4.96736 5.07009 5.10178 5.16762 5.28453 5.36022 5.44649 5.50320 5.57417 5.63579 5.70726 5.93139 5.97321 6.11255 6.20149 6.30636 6.45362 6.88981 6.91026 7.46287 8.97552 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.003841 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.841086 B = 7287.165695 C = 7624.129775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.155 4.155 4 C 0.103 3.897 5 O -0.509 6.509 6 C -0.157 4.157 7 C -0.057 4.057 8 C 0.092 3.908 9 N -0.542 5.542 10 C 0.067 3.933 11 C -0.110 4.110 12 C -0.102 4.102 13 C 0.053 3.947 14 H -0.004 1.004 15 C -0.536 4.536 16 H 0.053 0.947 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.268 1.268 22 H -0.284 1.284 23 C 0.082 3.918 24 C -0.122 4.122 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.143 0.857 29 H 0.409 0.591 30 H 0.124 0.876 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.024 0.976 39 H 0.260 0.740 40 H 0.018 0.982 41 H 0.062 0.938 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.372 14.982 -13.466 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.074 4.074 3 C -0.173 4.173 4 C 0.058 3.942 5 O -0.322 6.322 6 C -0.176 4.176 7 C -0.058 4.058 8 C -0.035 4.035 9 N -0.266 5.266 10 C -0.060 4.060 11 C -0.148 4.148 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.014 0.986 15 C -0.574 4.574 16 H 0.072 0.928 17 C -0.185 4.185 18 N -0.556 5.556 19 Si 0.781 3.219 20 H -0.201 1.201 21 H -0.192 1.192 22 H -0.210 1.210 23 C -0.046 4.046 24 C -0.141 4.141 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.042 0.958 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.081 0.919 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.838 14.903 -12.438 20.580 hybrid contribution 1.385 -1.061 -0.392 1.788 sum -5.453 13.842 -12.830 19.645 Atomic orbital electron populations 1.20841 0.88998 1.03572 1.03441 1.20079 0.97589 0.92050 0.97682 1.21461 0.93193 0.99008 1.03669 1.18466 0.90288 0.85089 1.00321 1.84781 1.76304 1.35766 1.35389 1.21363 1.00408 0.91823 1.04026 1.19632 0.94100 0.93851 0.98223 1.21079 0.98634 0.94373 0.89394 1.61940 1.47490 1.02390 1.14784 1.22035 0.93598 0.96142 0.94256 1.21578 1.00279 0.97146 0.95825 1.21456 0.97107 0.93463 1.02046 1.18582 0.94191 0.93087 0.90730 0.98586 1.21522 1.43156 1.00204 0.92559 0.92827 1.25738 0.95759 1.01627 0.95390 1.70049 1.49258 1.38449 0.97835 0.85600 0.78510 0.80287 0.77504 1.20100 1.19221 1.20984 1.22013 0.96304 0.87715 0.98532 1.21113 0.93365 0.98509 1.01071 0.89554 0.91224 0.90451 0.83909 0.73246 0.85773 0.93782 0.89302 0.95545 0.90324 0.91566 0.93490 0.92397 0.95766 0.93097 0.96408 0.91931 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -1.00 16 2 C -0.07 -1.58 5.88 -19.88 -0.12 -1.70 16 3 C -0.15 -3.24 9.64 22.37 0.22 -3.03 16 4 C 0.10 2.36 6.71 22.51 0.15 2.51 16 5 O -0.51 -10.05 13.50 -92.42 -1.25 -11.30 16 6 C -0.16 -3.98 7.81 22.36 0.17 -3.80 16 7 C -0.06 -1.55 4.89 -19.88 -0.10 -1.64 16 8 C 0.09 2.72 5.12 85.56 0.44 3.15 16 9 N -0.54 -20.11 4.65 -900.91 -4.19 -24.30 16 10 C 0.07 2.44 5.16 86.33 0.45 2.88 16 11 C -0.11 -4.54 6.09 30.65 0.19 -4.36 16 12 C -0.10 -5.09 5.03 30.67 0.15 -4.93 16 13 C 0.05 2.76 2.26 -11.49 -0.03 2.73 16 14 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 15 C -0.54 -30.06 8.56 25.60 0.22 -29.84 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 17 C 0.01 0.76 5.31 84.66 0.45 1.21 16 18 N -0.92 -54.11 11.36 21.45 0.24 -53.86 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 23 C 0.08 3.50 4.68 86.33 0.40 3.90 16 24 C -0.12 -3.05 9.35 22.28 0.21 -2.84 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 27 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.41 3.72 9.06 -74.06 -0.67 3.05 16 30 H 0.12 3.04 7.95 -2.91 -0.02 3.02 16 31 H 0.04 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.09 2.44 7.93 -2.38 -0.02 2.43 16 33 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 2.63 5.75 -2.39 -0.01 2.62 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.06 3.24 6.16 -2.39 -0.01 3.22 16 38 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 2.60 8.01 -2.39 -0.02 2.58 16 42 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -65.59 335.13 0.68 -64.91 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.33 Total: 15.22 kcal Atomic # 6 Polarization: -40.28 SS G_CDS: 3.52 Total: -36.76 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.94 Total: -78.16 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.25 Total: -11.30 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -65.59 0.68 -64.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232882782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.902 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds