Wall clock time and date at job start Mon Mar 30 2020 01:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38166 * 119.97281 * 2 1 4 4 C 1.38702 * 119.94657 * 179.97438 * 3 2 1 5 5 O 1.35902 * 120.06089 * 180.02562 * 4 3 2 6 6 C 1.38754 * 119.89148 * 0.02562 * 4 3 2 7 7 C 1.38130 * 119.93952 * 359.97438 * 6 4 3 8 8 C 1.50701 * 119.96934 * 180.02562 * 7 6 4 9 9 N 1.46897 * 109.46821 * 90.00470 * 8 7 6 10 10 C 1.46847 * 111.00423 * 45.78754 * 9 8 7 11 11 C 1.53039 * 109.52301 * 185.83887 * 10 9 8 12 12 C 1.53119 * 109.27858 * 300.81649 * 11 10 9 13 13 C 1.53127 * 109.15705 * 57.65769 * 12 11 10 14 14 H 1.09003 * 109.50156 * 62.28420 * 13 12 11 15 15 C 1.50699 * 109.50142 * 182.40160 * 13 12 11 16 16 H 1.07994 * 120.00244 * 119.80388 * 15 13 12 17 17 C 1.37878 * 119.99773 * 299.80455 * 15 13 12 18 18 N 1.31510 * 120.00375 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99818 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47230 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46908 * 119.99570 * 19 17 15 22 22 H 1.48496 * 109.47687 * 239.99687 * 19 17 15 23 23 C 1.46850 * 110.99805 * 169.99886 * 9 8 7 24 24 C 1.38247 * 119.97032 * 179.72251 * 2 1 3 25 25 H 1.09002 * 109.47152 * 89.99940 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00040 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00021 * 1 2 3 28 28 H 1.08008 * 120.02383 * 0.02562 * 3 2 1 29 29 H 0.96705 * 113.99912 * 89.99970 * 5 4 3 30 30 H 1.08001 * 120.03481 * 180.02562 * 6 4 3 31 31 H 1.09008 * 109.46627 * 210.00029 * 8 7 6 32 32 H 1.08999 * 109.47402 * 329.99951 * 8 7 6 33 33 H 1.08998 * 109.45864 * 305.85400 * 10 9 8 34 34 H 1.09002 * 109.45973 * 65.82151 * 10 9 8 35 35 H 1.09004 * 109.49738 * 180.87874 * 11 10 9 36 36 H 1.08999 * 109.53308 * 60.78011 * 11 10 9 37 37 H 1.08994 * 109.52753 * 297.75137 * 12 11 10 38 38 H 1.08995 * 109.51885 * 177.55792 * 12 11 10 39 39 H 0.97005 * 120.00553 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.46383 * 294.17449 * 23 9 8 41 41 H 1.08996 * 109.46260 * 54.14392 * 23 9 8 42 42 H 1.07991 * 119.94451 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1969 0.0000 4 6 3.5843 1.1962 0.0005 5 8 4.2656 2.3722 0.0011 6 6 4.2753 -0.0070 0.0005 7 6 3.5805 -1.2009 0.0005 8 6 4.3303 -2.5082 0.0011 9 7 4.5732 -2.9326 1.3863 10 6 3.3594 -2.7917 2.2006 11 6 3.6856 -3.1026 3.6631 12 6 4.2296 -4.5302 3.7672 13 6 5.4650 -4.6637 2.8725 14 1 6.2431 -3.9855 3.2230 15 6 5.9722 -6.0818 2.9233 16 1 6.0204 -6.6708 2.0194 17 6 6.3745 -6.6274 4.1240 18 7 6.3162 -5.9101 5.2247 19 14 7.0025 -8.3856 4.1872 20 1 6.9694 -8.9724 2.8234 21 1 8.3977 -8.3949 4.6957 22 1 6.1403 -9.1870 5.0924 23 6 5.0872 -4.3074 1.4329 24 6 2.1976 -1.1976 0.0058 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6572 2.1322 0.0004 29 1 4.4624 2.7123 0.8847 30 1 5.3553 -0.0102 0.0014 31 1 3.7391 -3.2662 -0.5128 32 1 5.2833 -2.3807 -0.5124 33 1 2.9852 -1.7710 2.1210 34 1 2.5992 -3.4859 1.8424 35 1 2.7810 -3.0131 4.2646 36 1 4.4355 -2.4000 4.0266 37 1 3.4656 -5.2358 3.4410 38 1 4.5039 -4.7409 4.8008 39 1 6.5990 -6.2940 6.0695 40 1 4.3190 -4.9946 1.0784 41 1 5.9680 -4.3877 0.7959 42 1 1.6563 -2.1320 0.0107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232882783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:13 Heat of formation + Delta-G solvation = -30.630793 kcal Electronic energy + Delta-G solvation = -21356.609399 eV Core-core repulsion = 18300.807380 eV Total energy + Delta-G solvation = -3055.802019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08751 -38.23049 -36.84749 -34.26328 -32.65811 -31.43154 -30.24716 -29.45047 -27.11969 -25.93693 -24.90908 -22.34018 -21.94871 -21.61475 -20.10453 -18.57989 -17.83693 -16.39998 -16.26187 -16.02828 -15.22909 -15.15608 -14.51948 -14.15376 -13.69579 -13.57790 -13.33923 -13.13572 -12.88732 -12.66237 -12.46130 -12.13994 -12.07744 -11.62954 -11.60256 -11.41140 -11.19059 -10.95936 -10.69436 -10.63585 -10.43552 -10.08356 -9.82829 -9.46273 -9.05745 -8.69742 -8.67826 -8.53224 -8.28869 -7.63825 -5.96927 -4.03066 1.22079 1.30119 3.30161 3.38298 3.41806 3.51692 4.15314 4.42016 4.63630 4.75178 4.77475 5.09924 5.21721 5.29653 5.33337 5.39107 5.45238 5.55194 5.69150 5.72450 5.81637 5.85591 6.01020 6.05919 6.11092 6.27771 6.38723 6.40412 6.44794 6.52080 6.62670 6.74436 6.75627 6.79695 6.97543 7.22820 7.40114 7.59485 7.66863 7.75631 7.81214 8.09074 8.18231 8.48715 9.01251 9.61294 11.09119 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031988 B = 0.003816 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.124879 B = 7335.492479 C = 7533.965565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.074 4.074 3 C -0.152 4.152 4 C 0.104 3.896 5 O -0.502 6.502 6 C -0.130 4.130 7 C -0.050 4.050 8 C 0.089 3.911 9 N -0.531 5.531 10 C 0.060 3.940 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.055 3.945 14 H 0.034 0.966 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C 0.067 3.933 24 C -0.122 4.122 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.389 0.611 30 H 0.130 0.870 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.021 0.979 35 H 0.045 0.955 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.259 0.741 40 H 0.020 0.980 41 H 0.060 0.940 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.425 12.816 -8.614 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.074 4.074 3 C -0.171 4.171 4 C 0.060 3.940 5 O -0.312 6.312 6 C -0.149 4.149 7 C -0.050 4.050 8 C -0.039 4.039 9 N -0.256 5.256 10 C -0.068 4.068 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.036 3.964 14 H 0.053 0.947 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.060 4.060 24 C -0.141 4.141 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.141 0.859 29 H 0.245 0.755 30 H 0.148 0.852 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.053 13.031 -8.839 18.163 hybrid contribution -0.208 -1.415 0.281 1.458 sum -9.260 11.616 -8.557 17.144 Atomic orbital electron populations 1.20783 0.91021 1.02869 1.02284 1.19705 0.96005 0.92489 0.99226 1.21199 0.93392 0.98110 1.04355 1.18417 0.89793 0.85141 1.00623 1.84797 1.76416 1.36382 1.33599 1.21297 1.00726 0.91076 1.01779 1.19738 0.93263 0.94953 0.97053 1.21130 0.98892 0.91947 0.91901 1.62185 1.29987 1.26022 1.07376 1.22153 0.90460 0.99359 0.94855 1.21677 0.99599 1.00494 0.93730 1.21651 0.97325 0.91392 1.04465 1.18667 0.93871 0.95970 0.87870 0.94746 1.21186 1.42366 0.97914 0.93826 0.92790 1.24932 0.95599 0.97539 0.95758 1.69903 1.47877 1.36214 0.98705 0.86579 0.78532 0.85122 0.77996 1.19860 1.21043 1.21109 1.22348 0.97463 0.84553 1.01608 1.21008 0.93652 0.97647 1.01766 0.91194 0.91581 0.91329 0.85851 0.75484 0.85209 0.94360 0.90119 0.91794 0.96120 0.93668 0.92210 0.95214 0.89165 0.93128 0.96208 0.92182 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.07 -0.85 5.88 -104.64 -0.62 -1.46 16 3 C -0.15 -1.75 9.64 -39.44 -0.38 -2.13 16 4 C 0.10 1.31 6.70 -39.22 -0.26 1.04 16 5 O -0.50 -5.58 13.50 -19.43 -0.26 -5.84 16 6 C -0.13 -1.76 9.64 -39.43 -0.38 -2.14 16 7 C -0.05 -0.69 4.13 -104.64 -0.43 -1.12 16 8 C 0.09 1.36 5.43 -4.98 -0.03 1.33 16 9 N -0.53 -9.82 4.80 -236.11 -1.13 -10.96 16 10 C 0.06 1.06 4.57 -3.83 -0.02 1.04 16 11 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 12 C -0.11 -2.62 5.03 -26.60 -0.13 -2.75 16 13 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 14 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 16 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 18 N -0.89 -25.33 11.36 55.43 0.63 -24.70 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.07 1.42 4.65 -3.83 -0.02 1.40 16 24 C -0.12 -1.56 7.42 -39.56 -0.29 -1.85 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 29 H 0.39 2.57 9.06 45.56 0.41 2.99 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.04 0.57 8.02 -51.92 -0.42 0.15 16 32 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 33 H 0.06 1.06 5.63 -51.93 -0.29 0.77 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -29.82 334.32 -9.77 -39.59 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -6.07 Total: 1.97 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.96 Total: -21.29 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.50 Total: -35.66 kcal Atomic # 8 Polarization: -5.58 SS G_CDS: -0.26 Total: -5.84 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.82 -9.77 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232882783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.964 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds